Ggra9938.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9938.t1
Unique Name	Ggra9938.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	499

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000887_pilon	contig	tig00000887_pilon:140395..141891 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9938	Ggra9938	Gracilaria gracilis GNS1m male	gene	tig00000887_pilon 140395..141891 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9938.t1.stop1	Ggra9938.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000887_pilon 140395..140397 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9938.t1.CDS1	Ggra9938.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000887_pilon 140395..141891 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9938.t1.exon1	Ggra9938.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000887_pilon 140395..141891 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9938.t1.start1	Ggra9938.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000887_pilon 141889..141891 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9938.t1	Ggra9938.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000887_pilon 140395..141891 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000887_pilon:140395..141891-
coding sequence from alignment at tig00000887_pilon:140395..141891-

mRNA sequence

>Ggra9938.t1 ID=Ggra9938.t1|Name=Ggra9938.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=499bp
MASTIALRMPPELAASTALATSSVDSKAPLWVTKDVINPIHLSNFEHAVA
RRRRRIFRIPDMGGPIANWLYTRPEPEAISEDAFQNSAIESTSLFRMEGL
SHDGTSITITPSLSSHWLMVPVQSMNGFTLGLAFLDILFQRDTGNNTIPP
LPVGRFVVEDATGEVFVTGWTADIMICGWIQSVIKCERVRELLLYKAPPV
NGVKPTQLLLRNSFFERRACHLCGQGRTFSSLPNPCSGVNKRGSAMLPTM
DKVTNVSSVYRRFRGAYFGVCVKTSFLGDQPTREVQPVFIDIRHGLLSVK
RRLHNSLRKNVAFEIPINSYFGMHPASSKKMLLFKPEPVEAGYPLIAMPE
DEEEKSGSEENSDTSYPNALSPQSIQRDNVSASSDSNSTNGQGPRRRRRV
DDEVGRMSAAHRRRVRNRESAQRSNLRRKERLARERHELSHYKSLIPILQ
QKYEDLMNEQMSLLIDASVKGKHDDVEQIINRKGLDVATRQTLLRDCQ*

spliced messenger RNA

>Ggra9938.t1 ID=Ggra9938.t1|Name=Ggra9938.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1497bp|location=Sequence derived from alignment at tig00000887_pilon:140395..141891- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCATCCACAATAGCCCTTCGCATGCCGCCTGAGCTCGCTGCCAGTAC
CGCGTTAGCCACTTCGAGCGTTGATAGTAAGGCGCCTCTTTGGGTTACCA
AGGACGTCATCAACCCCATTCATCTCTCCAACTTCGAGCATGCCGTCGCA
CGTCGCCGTCGCCGTATTTTTCGAATCCCAGATATGGGCGGTCCCATAGC
CAACTGGCTGTACACCCGTCCCGAGCCAGAAGCTATCAGCGAGGATGCTT
TCCAAAACAGTGCCATTGAGAGTACTTCTCTCTTCCGAATGGAGGGTCTT
TCACATGACGGCACCTCCATCACCATCACTCCTTCTCTTTCAAGCCATTG
GCTCATGGTCCCCGTTCAATCCATGAATGGCTTCACCCTGGGTCTGGCTT
TCCTGGATATTCTCTTTCAACGCGACACAGGCAACAATACTATACCTCCA
CTGCCTGTTGGCCGCTTCGTCGTCGAGGACGCCACCGGTGAGGTGTTCGT
CACCGGCTGGACCGCCGATATCATGATCTGCGGCTGGATTCAGAGTGTCA
TCAAGTGCGAACGCGTCCGTGAACTCCTACTTTATAAAGCCCCCCCCGTC
AACGGTGTTAAGCCCACACAATTGCTGCTTCGCAACTCCTTTTTCGAGCG
CCGCGCATGTCACCTGTGTGGCCAGGGTCGAACTTTCTCGTCGCTGCCAA
ACCCTTGTTCGGGTGTGAACAAGCGTGGTTCTGCGATGTTACCCACCATG
GACAAGGTTACAAACGTCTCTTCTGTGTATCGTCGTTTCCGAGGTGCTTA
CTTTGGTGTATGCGTAAAGACAAGCTTCTTGGGCGATCAACCAACAAGAG
AGGTGCAGCCAGTGTTTATCGATATTCGCCACGGTTTACTTTCTGTCAAA
CGCCGCCTTCACAACTCCCTTCGCAAGAATGTCGCATTTGAGATTCCCAT
TAACTCGTACTTTGGCATGCACCCCGCATCGTCCAAAAAGATGCTCCTCT
TCAAACCAGAGCCGGTTGAAGCCGGATATCCATTGATTGCCATGCCAGAA
GACGAAGAAGAGAAATCTGGGTCGGAGGAGAATTCGGACACCAGTTATCC
AAATGCGTTATCTCCGCAAAGTATTCAACGTGATAACGTTTCGGCGTCAT
CTGATAGCAATTCTACAAACGGTCAGGGTCCGCGACGAAGACGGCGTGTA
GATGATGAGGTGGGAAGAATGTCGGCAGCACATAGAAGAAGGGTCCGAAA
TCGTGAGTCTGCCCAACGCAGCAATCTTCGTCGCAAAGAACGTCTTGCCC
GTGAGCGGCATGAACTTTCTCACTACAAGTCTCTAATACCTATACTGCAG
CAGAAGTATGAAGACCTCATGAACGAACAAATGTCTCTACTTATTGACGC
TTCCGTGAAAGGCAAGCACGACGATGTCGAACAAATTATTAATAGGAAGG
GCTTGGACGTCGCAACACGGCAGACCTTATTGAGAGACTGCCAATAA

protein sequence of Ggra9938.t1

>Ggra9938.t1 ID=Ggra9938.t1|Name=Ggra9938.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=499bp
MASTIALRMPPELAASTALATSSVDSKAPLWVTKDVINPIHLSNFEHAVA
RRRRRIFRIPDMGGPIANWLYTRPEPEAISEDAFQNSAIESTSLFRMEGL
SHDGTSITITPSLSSHWLMVPVQSMNGFTLGLAFLDILFQRDTGNNTIPP
LPVGRFVVEDATGEVFVTGWTADIMICGWIQSVIKCERVRELLLYKAPPV
NGVKPTQLLLRNSFFERRACHLCGQGRTFSSLPNPCSGVNKRGSAMLPTM
DKVTNVSSVYRRFRGAYFGVCVKTSFLGDQPTREVQPVFIDIRHGLLSVK
RRLHNSLRKNVAFEIPINSYFGMHPASSKKMLLFKPEPVEAGYPLIAMPE
DEEEKSGSEENSDTSYPNALSPQSIQRDNVSASSDSNSTNGQGPRRRRRV
DDEVGRMSAAHRRRVRNRESAQRSNLRRKERLARERHELSHYKSLIPILQ
QKYEDLMNEQMSLLIDASVKGKHDDVEQIINRKGLDVATRQTLLRDCQ*

mRNA from alignment at tig00000887_pilon:140395..141891-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9938.t1 ID=Ggra9938.t1|Name=Ggra9938.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1497bp|location=Sequence derived from alignment at tig00000887_pilon:140395..141891- (Gracilaria gracilis GNS1m male)
ATGGCATCCACAATAGCCCTTCGCATGCCGCCTGAGCTCGCTGCCAGTAC
CGCGTTAGCCACTTCGAGCGTTGATAGTAAGGCGCCTCTTTGGGTTACCA
AGGACGTCATCAACCCCATTCATCTCTCCAACTTCGAGCATGCCGTCGCA
CGTCGCCGTCGCCGTATTTTTCGAATCCCAGATATGGGCGGTCCCATAGC
CAACTGGCTGTACACCCGTCCCGAGCCAGAAGCTATCAGCGAGGATGCTT
TCCAAAACAGTGCCATTGAGAGTACTTCTCTCTTCCGAATGGAGGGTCTT
TCACATGACGGCACCTCCATCACCATCACTCCTTCTCTTTCAAGCCATTG
GCTCATGGTCCCCGTTCAATCCATGAATGGCTTCACCCTGGGTCTGGCTT
TCCTGGATATTCTCTTTCAACGCGACACAGGCAACAATACTATACCTCCA
CTGCCTGTTGGCCGCTTCGTCGTCGAGGACGCCACCGGTGAGGTGTTCGT
CACCGGCTGGACCGCCGATATCATGATCTGCGGCTGGATTCAGAGTGTCA
TCAAGTGCGAACGCGTCCGTGAACTCCTACTTTATAAAGCCCCCCCCGTC
AACGGTGTTAAGCCCACACAATTGCTGCTTCGCAACTCCTTTTTCGAGCG
CCGCGCATGTCACCTGTGTGGCCAGGGTCGAACTTTCTCGTCGCTGCCAA
ACCCTTGTTCGGGTGTGAACAAGCGTGGTTCTGCGATGTTACCCACCATG
GACAAGGTTACAAACGTCTCTTCTGTGTATCGTCGTTTCCGAGGTGCTTA
CTTTGGTGTATGCGTAAAGACAAGCTTCTTGGGCGATCAACCAACAAGAG
AGGTGCAGCCAGTGTTTATCGATATTCGCCACGGTTTACTTTCTGTCAAA
CGCCGCCTTCACAACTCCCTTCGCAAGAATGTCGCATTTGAGATTCCCAT
TAACTCGTACTTTGGCATGCACCCCGCATCGTCCAAAAAGATGCTCCTCT
TCAAACCAGAGCCGGTTGAAGCCGGATATCCATTGATTGCCATGCCAGAA
GACGAAGAAGAGAAATCTGGGTCGGAGGAGAATTCGGACACCAGTTATCC
AAATGCGTTATCTCCGCAAAGTATTCAACGTGATAACGTTTCGGCGTCAT
CTGATAGCAATTCTACAAACGGTCAGGGTCCGCGACGAAGACGGCGTGTA
GATGATGAGGTGGGAAGAATGTCGGCAGCACATAGAAGAAGGGTCCGAAA
TCGTGAGTCTGCCCAACGCAGCAATCTTCGTCGCAAAGAACGTCTTGCCC
GTGAGCGGCATGAACTTTCTCACTACAAGTCTCTAATACCTATACTGCAG
CAGAAGTATGAAGACCTCATGAACGAACAAATGTCTCTACTTATTGACGC
TTCCGTGAAAGGCAAGCACGACGATGTCGAACAAATTATTAATAGGAAGG
GCTTGGACGTCGCAACACGGCAGACCTTATTGAGAGACTGCCAATAA

Coding sequence (CDS) from alignment at tig00000887_pilon:140395..141891-

>Ggra9938.t1 ID=Ggra9938.t1|Name=Ggra9938.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1497bp|location=Sequence derived from alignment at tig00000887_pilon:140395..141891- (Gracilaria gracilis GNS1m male)
ATGGCATCCACAATAGCCCTTCGCATGCCGCCTGAGCTCGCTGCCAGTAC
CGCGTTAGCCACTTCGAGCGTTGATAGTAAGGCGCCTCTTTGGGTTACCA
AGGACGTCATCAACCCCATTCATCTCTCCAACTTCGAGCATGCCGTCGCA
CGTCGCCGTCGCCGTATTTTTCGAATCCCAGATATGGGCGGTCCCATAGC
CAACTGGCTGTACACCCGTCCCGAGCCAGAAGCTATCAGCGAGGATGCTT
TCCAAAACAGTGCCATTGAGAGTACTTCTCTCTTCCGAATGGAGGGTCTT
TCACATGACGGCACCTCCATCACCATCACTCCTTCTCTTTCAAGCCATTG
GCTCATGGTCCCCGTTCAATCCATGAATGGCTTCACCCTGGGTCTGGCTT
TCCTGGATATTCTCTTTCAACGCGACACAGGCAACAATACTATACCTCCA
CTGCCTGTTGGCCGCTTCGTCGTCGAGGACGCCACCGGTGAGGTGTTCGT
CACCGGCTGGACCGCCGATATCATGATCTGCGGCTGGATTCAGAGTGTCA
TCAAGTGCGAACGCGTCCGTGAACTCCTACTTTATAAAGCCCCCCCCGTC
AACGGTGTTAAGCCCACACAATTGCTGCTTCGCAACTCCTTTTTCGAGCG
CCGCGCATGTCACCTGTGTGGCCAGGGTCGAACTTTCTCGTCGCTGCCAA
ACCCTTGTTCGGGTGTGAACAAGCGTGGTTCTGCGATGTTACCCACCATG
GACAAGGTTACAAACGTCTCTTCTGTGTATCGTCGTTTCCGAGGTGCTTA
CTTTGGTGTATGCGTAAAGACAAGCTTCTTGGGCGATCAACCAACAAGAG
AGGTGCAGCCAGTGTTTATCGATATTCGCCACGGTTTACTTTCTGTCAAA
CGCCGCCTTCACAACTCCCTTCGCAAGAATGTCGCATTTGAGATTCCCAT
TAACTCGTACTTTGGCATGCACCCCGCATCGTCCAAAAAGATGCTCCTCT
TCAAACCAGAGCCGGTTGAAGCCGGATATCCATTGATTGCCATGCCAGAA
GACGAAGAAGAGAAATCTGGGTCGGAGGAGAATTCGGACACCAGTTATCC
AAATGCGTTATCTCCGCAAAGTATTCAACGTGATAACGTTTCGGCGTCAT
CTGATAGCAATTCTACAAACGGTCAGGGTCCGCGACGAAGACGGCGTGTA
GATGATGAGGTGGGAAGAATGTCGGCAGCACATAGAAGAAGGGTCCGAAA
TCGTGAGTCTGCCCAACGCAGCAATCTTCGTCGCAAAGAACGTCTTGCCC
GTGAGCGGCATGAACTTTCTCACTACAAGTCTCTAATACCTATACTGCAG
CAGAAGTATGAAGACCTCATGAACGAACAAATGTCTCTACTTATTGACGC
TTCCGTGAAAGGCAAGCACGACGATGTCGAACAAATTATTAATAGGAAGG
GCTTGGACGTCGCAACACGGCAGACCTTATTGAGAGACTGCCAATAA