Ggra9936.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9936.t1
Unique Name	Ggra9936.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	808

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000887_pilon	contig	tig00000887_pilon:133585..136008 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4558.Sb08g006900.1
PFAMs	NYN,OST-HTH
Max annot lvl	35493\|Streptophyta
Evalue	4.65e-12
EggNOG OGs	2CN71@1\|root,2QUA6@2759\|Eukaryota,37QPJ@33090\|Viridiplantae,3GBFU@35493\|Streptophyta,3KS3X@4447\|Liliopsida,3I46I@38820\|Poales
Description	NYN domain
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9936	Ggra9936	Gracilaria gracilis GNS1m male	gene	tig00000887_pilon 133585..136008 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9936.t1.start1	Ggra9936.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000887_pilon 133585..133587 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9936.t1.CDS1	Ggra9936.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000887_pilon 133585..136008 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9936.t1.exon1	Ggra9936.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000887_pilon 133585..136008 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9936.t1.stop1	Ggra9936.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000887_pilon 136006..136008 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9936.t1	Ggra9936.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000887_pilon 133585..136008 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000887_pilon:133585..136008+
coding sequence from alignment at tig00000887_pilon:133585..136008+

mRNA sequence

>Ggra9936.t1 ID=Ggra9936.t1|Name=Ggra9936.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=808bp
MSYRSLRAACGRAAPAAALLAAVAATASLSYAISKYLRAAARARSESSTA
GASVDCSSAQRAQPLQAAPQPSVSSDSFDTGTDFEPTRLSSNAWQRTLAV
HCSSCHPSPFIRPAAAYSRPFAWTVFWDLENTHVPSSTPPAAFVQALCTA
LRSITPHSCVSHPHPVLRILAVANIHTTSLQQRKSLQSNGVSILHFETDG
RKDACDKALITELCLLAREHAPPMGVALLSADVDFAYALSRLTALGYYTA
VVAPNMPTLSRQLASVPNAVLTFDQILAHIPPRVVPQPHQNPKVKPAAVQ
QRADQKPPAPPNPAKPQKKRKSPKQPPLVSGANNPTRTPKSKPQLPTDQK
PPAPPNPAKPQKKRKSPKQPPLVSGANNPTRTLAPNPQLNTDQKPASVPN
AVLTFDQILAHIPPRVVPQPHQNPKVKPAAVQQRAAQKPPAPPNPAKPQK
KRKSPKQPPLVSGANNPTRTLAPNPQLNTDQKPASVPNAVLTFDQILAHI
PPRVVPQPHQNPKVKPAAVQQRAAQKPPAPPNPAKPQKKRKSPKQPPLVS
GANNPTRTPKSKPQLPTDQKPPAPPNPAKPQKKRKSPKQPPLVSGANNPT
RTPKSKPQLPTDQKPPAPPNPAKPQKKRKSPKQPPLVSGANNPTRTPKSK
PQLPTDQKPPAPPNPAKPQKKRKSPSKQPPVVSGANNPTRTLAPNPQLST
DQKPRAPRNAPKGQQKRKSPPKQPPVVSGTNFSVVNTTTELRHRKVPQPS
GTDDADVTTLMQSHSINSTQSFDPHVPTDSETVFLIVLGYTALFSILFTL
AVLYWAS*

spliced messenger RNA

>Ggra9936.t1 ID=Ggra9936.t1|Name=Ggra9936.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2424bp|location=Sequence derived from alignment at tig00000887_pilon:133585..136008+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCTACAGGTcgctgcgcgctgcctgcggtcgcgccgcgccggccgc
cgcgctgctcgccgccgttgccgccaccgcTTCGCTTTCGTACGCCATTA
GCAAGTACCTCCGCGCTGCGGCGCGCGCGCGCTCCGAAAGCTCAACGGCT
GGTGCGAGTGTAGACTGTTCCAGCGCGCAGCGAGCTCAGCCTCTGCAAGC
CGCGCCGCAGCCATCCGTTTCGTCCGACTCGTTCGACACCGGCACCGACT
TTGAGCCGACGCGTCTGTCGAGCAATGCGTGGCAGCGCACGCTTGCCGTA
CATTGCAGCTCGTGTCATCCTTCGCCCTTCATCAGGCCCGCGGCTGCATA
CTCGCGTCCGTTTGCATGGACCGTGTTTTGGGACCTCGAGAACACCCACG
TGCCGTCGTCCACCCCTCCCGCTGCTTTCGTACAGGCGCTCTGCACCGCG
CTGCGCTCCATAACGCCGCACTCGTGTGTCAGCCATCCTCACCCCGTGCT
CCGTATCCTGGCTGTTGCAAATATTCACACCACCTCGCTTCAGCAACGCA
AGTCGCTGCAGTCCAATGGAGTCTCAATACTTCATTTTGAGACGGACGGC
CGCAAGGACGCTTGCGACAAGGCGCTCATTACTGAGCTGTGTCTCTTAGC
TCGCGAACATGCGCCGCCGATGGGAGTTGCTCTATTGTCGGCCGACGTCG
ATTTTGCGTATGCACTCTCTCGTCTCACTGCCTTGGGTTATTATACGGCT
GTTGTCGCGCCAAACATGCCAACACTCTCTCGTCAGCTAGCGTCCGTGCC
AAACGCCGTCCTCACTTTCGACCAAATCCTTGCACATATCCCGCCGCGTG
TTGTCCCTCAACCCCACCAGAATCCTAAGGTCAAACCCGCAGCTGTCCAA
CAACGTGCTGACCAAAAACCACCTGCTCCACCGAATCCCGCCAAACCACA
AAAGAAGCGCAAGTCCCCGAAACAACCACCGCTGGTGAGCGGCGCCAACA
ACCCCACCAGAACCCCAAAGTCAAAGCCGCAACTGCCAACTGACCAAAAA
CCACCTGCTCCACCGAATCCCGCCAAACCACAAAAGAAGCGCAAGTCCCC
GAAACAACCACCGCTGGTGAGCGGCGCCAACAACCCCACCAGAACCCTTG
CGCCAAACCCGCAACTGAACACTGACCAAAAACCAGCGTCCGTGCCAAAC
GCCGTCCTCACTTTCGACCAAATCCTTGCACATATCCCGCCGCGTGTTGT
CCCTCAACCCCACCAGAATCCTAAGGTCAAACCCGCAGCTGTCCAACAAC
GTGCTGCCCAAAAACCACCTGCTCCACCGAATCCCGCCAAACCACAAAAG
AAGCGCAAGTCCCCGAAACAACCACCGCTGGTGAGCGGCGCCAACAACCC
CACCAGAACCCTTGCGCCAAACCCGCAACTGAACACTGACCAAAAACCAG
CGTCCGTGCCAAACGCCGTCCTCACTTTCGACCAAATCCTTGCACATATC
CCGCCGCGTGTTGTCCCTCAACCCCACCAGAATCCTAAGGTCAAACCCGC
AGCTGTCCAACAACGTGCTGCCCAAAAACCACCTGCTCCACCGAATCCCG
CCAAACCACAAAAGAAGCGTAAGTCCCCGAAACAACCACCGCTGGTGAGC
GGCGCCAACAACCCCACCAGAACCCCAAAGTCAAAGCCGCAACTGCCAAC
TGACCAAAAACCACCTGCTCCACCGAATCCCGCCAAACCACAAAAGAAGC
GCAAGTCCCCGAAACAACCACCGCTGGTGAGCGGCGCCAACAACCCCACC
AGAACCCCAAAGTCAAAGCCGCAACTGCCAACTGACCAAAAACCACCTGC
TCCACCGAATCCCGCCAAACCACAAAAGAAGCGCAAGTCCCCGAAACAAC
CACCGCTGGTGAGCGGCGCCAACAACCCCACCAGAACCCCAAAGTCAAAG
CCGCAACTGCCAACTGACCAAAAACCACCTGCTCCACCGAATCCCGCCAA
ACCACAAAAGAAGCGCAAGTCCCCCTCCAAACAACCACCGGTCGTTAGCG
GCGCCAACAACCCCACCAGAACCCTTGCGCCAAACCCGCAACTGAGCACT
GACCAAAAACCACGTGCTCCACGGAATGCCCCCAAGGGACAACAGAAGCG
CAAGTCCCCCCCCAAACAACCACCAGTGGTTAGCGGCACCAACTTCTCTG
TTGTAAACACCACTACGGAGCTTCGACACCGGAAAGTACCTCAACCAAGC
GGCACCGACGATGCGGATGTTACCACCCTTATGCAATCACATTCGATCAA
CTCCACACAGTCCTTTGATCCGCACGTTCCGACGGACAGCGAAACTGTTT
TTCTGATCGTTTTGGGCTACACAGCCCTTTTTTCAATACTGTTCACTCTG
GCTGTGCTGTATTGGGCTTCTTGA

protein sequence of Ggra9936.t1

>Ggra9936.t1 ID=Ggra9936.t1|Name=Ggra9936.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=808bp
MSYRSLRAACGRAAPAAALLAAVAATASLSYAISKYLRAAARARSESSTA
GASVDCSSAQRAQPLQAAPQPSVSSDSFDTGTDFEPTRLSSNAWQRTLAV
HCSSCHPSPFIRPAAAYSRPFAWTVFWDLENTHVPSSTPPAAFVQALCTA
LRSITPHSCVSHPHPVLRILAVANIHTTSLQQRKSLQSNGVSILHFETDG
RKDACDKALITELCLLAREHAPPMGVALLSADVDFAYALSRLTALGYYTA
VVAPNMPTLSRQLASVPNAVLTFDQILAHIPPRVVPQPHQNPKVKPAAVQ
QRADQKPPAPPNPAKPQKKRKSPKQPPLVSGANNPTRTPKSKPQLPTDQK
PPAPPNPAKPQKKRKSPKQPPLVSGANNPTRTLAPNPQLNTDQKPASVPN
AVLTFDQILAHIPPRVVPQPHQNPKVKPAAVQQRAAQKPPAPPNPAKPQK
KRKSPKQPPLVSGANNPTRTLAPNPQLNTDQKPASVPNAVLTFDQILAHI
PPRVVPQPHQNPKVKPAAVQQRAAQKPPAPPNPAKPQKKRKSPKQPPLVS
GANNPTRTPKSKPQLPTDQKPPAPPNPAKPQKKRKSPKQPPLVSGANNPT
RTPKSKPQLPTDQKPPAPPNPAKPQKKRKSPKQPPLVSGANNPTRTPKSK
PQLPTDQKPPAPPNPAKPQKKRKSPSKQPPVVSGANNPTRTLAPNPQLST
DQKPRAPRNAPKGQQKRKSPPKQPPVVSGTNFSVVNTTTELRHRKVPQPS
GTDDADVTTLMQSHSINSTQSFDPHVPTDSETVFLIVLGYTALFSILFTL
AVLYWAS*

mRNA from alignment at tig00000887_pilon:133585..136008+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9936.t1 ID=Ggra9936.t1|Name=Ggra9936.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2424bp|location=Sequence derived from alignment at tig00000887_pilon:133585..136008+ (Gracilaria gracilis GNS1m male)
ATGAGCTACAGGTcgctgcgcgctgcctgcggtcgcgccgcgccggccgc
cgcgctgctcgccgccgttgccgccaccgcTTCGCTTTCGTACGCCATTA
GCAAGTACCTCCGCGCTGCGGCGCGCGCGCGCTCCGAAAGCTCAACGGCT
GGTGCGAGTGTAGACTGTTCCAGCGCGCAGCGAGCTCAGCCTCTGCAAGC
CGCGCCGCAGCCATCCGTTTCGTCCGACTCGTTCGACACCGGCACCGACT
TTGAGCCGACGCGTCTGTCGAGCAATGCGTGGCAGCGCACGCTTGCCGTA
CATTGCAGCTCGTGTCATCCTTCGCCCTTCATCAGGCCCGCGGCTGCATA
CTCGCGTCCGTTTGCATGGACCGTGTTTTGGGACCTCGAGAACACCCACG
TGCCGTCGTCCACCCCTCCCGCTGCTTTCGTACAGGCGCTCTGCACCGCG
CTGCGCTCCATAACGCCGCACTCGTGTGTCAGCCATCCTCACCCCGTGCT
CCGTATCCTGGCTGTTGCAAATATTCACACCACCTCGCTTCAGCAACGCA
AGTCGCTGCAGTCCAATGGAGTCTCAATACTTCATTTTGAGACGGACGGC
CGCAAGGACGCTTGCGACAAGGCGCTCATTACTGAGCTGTGTCTCTTAGC
TCGCGAACATGCGCCGCCGATGGGAGTTGCTCTATTGTCGGCCGACGTCG
ATTTTGCGTATGCACTCTCTCGTCTCACTGCCTTGGGTTATTATACGGCT
GTTGTCGCGCCAAACATGCCAACACTCTCTCGTCAGCTAGCGTCCGTGCC
AAACGCCGTCCTCACTTTCGACCAAATCCTTGCACATATCCCGCCGCGTG
TTGTCCCTCAACCCCACCAGAATCCTAAGGTCAAACCCGCAGCTGTCCAA
CAACGTGCTGACCAAAAACCACCTGCTCCACCGAATCCCGCCAAACCACA
AAAGAAGCGCAAGTCCCCGAAACAACCACCGCTGGTGAGCGGCGCCAACA
ACCCCACCAGAACCCCAAAGTCAAAGCCGCAACTGCCAACTGACCAAAAA
CCACCTGCTCCACCGAATCCCGCCAAACCACAAAAGAAGCGCAAGTCCCC
GAAACAACCACCGCTGGTGAGCGGCGCCAACAACCCCACCAGAACCCTTG
CGCCAAACCCGCAACTGAACACTGACCAAAAACCAGCGTCCGTGCCAAAC
GCCGTCCTCACTTTCGACCAAATCCTTGCACATATCCCGCCGCGTGTTGT
CCCTCAACCCCACCAGAATCCTAAGGTCAAACCCGCAGCTGTCCAACAAC
GTGCTGCCCAAAAACCACCTGCTCCACCGAATCCCGCCAAACCACAAAAG
AAGCGCAAGTCCCCGAAACAACCACCGCTGGTGAGCGGCGCCAACAACCC
CACCAGAACCCTTGCGCCAAACCCGCAACTGAACACTGACCAAAAACCAG
CGTCCGTGCCAAACGCCGTCCTCACTTTCGACCAAATCCTTGCACATATC
CCGCCGCGTGTTGTCCCTCAACCCCACCAGAATCCTAAGGTCAAACCCGC
AGCTGTCCAACAACGTGCTGCCCAAAAACCACCTGCTCCACCGAATCCCG
CCAAACCACAAAAGAAGCGTAAGTCCCCGAAACAACCACCGCTGGTGAGC
GGCGCCAACAACCCCACCAGAACCCCAAAGTCAAAGCCGCAACTGCCAAC
TGACCAAAAACCACCTGCTCCACCGAATCCCGCCAAACCACAAAAGAAGC
GCAAGTCCCCGAAACAACCACCGCTGGTGAGCGGCGCCAACAACCCCACC
AGAACCCCAAAGTCAAAGCCGCAACTGCCAACTGACCAAAAACCACCTGC
TCCACCGAATCCCGCCAAACCACAAAAGAAGCGCAAGTCCCCGAAACAAC
CACCGCTGGTGAGCGGCGCCAACAACCCCACCAGAACCCCAAAGTCAAAG
CCGCAACTGCCAACTGACCAAAAACCACCTGCTCCACCGAATCCCGCCAA
ACCACAAAAGAAGCGCAAGTCCCCCTCCAAACAACCACCGGTCGTTAGCG
GCGCCAACAACCCCACCAGAACCCTTGCGCCAAACCCGCAACTGAGCACT
GACCAAAAACCACGTGCTCCACGGAATGCCCCCAAGGGACAACAGAAGCG
CAAGTCCCCCCCCAAACAACCACCAGTGGTTAGCGGCACCAACTTCTCTG
TTGTAAACACCACTACGGAGCTTCGACACCGGAAAGTACCTCAACCAAGC
GGCACCGACGATGCGGATGTTACCACCCTTATGCAATCACATTCGATCAA
CTCCACACAGTCCTTTGATCCGCACGTTCCGACGGACAGCGAAACTGTTT
TTCTGATCGTTTTGGGCTACACAGCCCTTTTTTCAATACTGTTCACTCTG
GCTGTGCTGTATTGGGCTTCTTGA

Coding sequence (CDS) from alignment at tig00000887_pilon:133585..136008+

>Ggra9936.t1 ID=Ggra9936.t1|Name=Ggra9936.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2424bp|location=Sequence derived from alignment at tig00000887_pilon:133585..136008+ (Gracilaria gracilis GNS1m male)
ATGAGCTACAGGTcgctgcgcgctgcctgcggtcgcgccgcgccggccgc
cgcgctgctcgccgccgttgccgccaccgcTTCGCTTTCGTACGCCATTA
GCAAGTACCTCCGCGCTGCGGCGCGCGCGCGCTCCGAAAGCTCAACGGCT
GGTGCGAGTGTAGACTGTTCCAGCGCGCAGCGAGCTCAGCCTCTGCAAGC
CGCGCCGCAGCCATCCGTTTCGTCCGACTCGTTCGACACCGGCACCGACT
TTGAGCCGACGCGTCTGTCGAGCAATGCGTGGCAGCGCACGCTTGCCGTA
CATTGCAGCTCGTGTCATCCTTCGCCCTTCATCAGGCCCGCGGCTGCATA
CTCGCGTCCGTTTGCATGGACCGTGTTTTGGGACCTCGAGAACACCCACG
TGCCGTCGTCCACCCCTCCCGCTGCTTTCGTACAGGCGCTCTGCACCGCG
CTGCGCTCCATAACGCCGCACTCGTGTGTCAGCCATCCTCACCCCGTGCT
CCGTATCCTGGCTGTTGCAAATATTCACACCACCTCGCTTCAGCAACGCA
AGTCGCTGCAGTCCAATGGAGTCTCAATACTTCATTTTGAGACGGACGGC
CGCAAGGACGCTTGCGACAAGGCGCTCATTACTGAGCTGTGTCTCTTAGC
TCGCGAACATGCGCCGCCGATGGGAGTTGCTCTATTGTCGGCCGACGTCG
ATTTTGCGTATGCACTCTCTCGTCTCACTGCCTTGGGTTATTATACGGCT
GTTGTCGCGCCAAACATGCCAACACTCTCTCGTCAGCTAGCGTCCGTGCC
AAACGCCGTCCTCACTTTCGACCAAATCCTTGCACATATCCCGCCGCGTG
TTGTCCCTCAACCCCACCAGAATCCTAAGGTCAAACCCGCAGCTGTCCAA
CAACGTGCTGACCAAAAACCACCTGCTCCACCGAATCCCGCCAAACCACA
AAAGAAGCGCAAGTCCCCGAAACAACCACCGCTGGTGAGCGGCGCCAACA
ACCCCACCAGAACCCCAAAGTCAAAGCCGCAACTGCCAACTGACCAAAAA
CCACCTGCTCCACCGAATCCCGCCAAACCACAAAAGAAGCGCAAGTCCCC
GAAACAACCACCGCTGGTGAGCGGCGCCAACAACCCCACCAGAACCCTTG
CGCCAAACCCGCAACTGAACACTGACCAAAAACCAGCGTCCGTGCCAAAC
GCCGTCCTCACTTTCGACCAAATCCTTGCACATATCCCGCCGCGTGTTGT
CCCTCAACCCCACCAGAATCCTAAGGTCAAACCCGCAGCTGTCCAACAAC
GTGCTGCCCAAAAACCACCTGCTCCACCGAATCCCGCCAAACCACAAAAG
AAGCGCAAGTCCCCGAAACAACCACCGCTGGTGAGCGGCGCCAACAACCC
CACCAGAACCCTTGCGCCAAACCCGCAACTGAACACTGACCAAAAACCAG
CGTCCGTGCCAAACGCCGTCCTCACTTTCGACCAAATCCTTGCACATATC
CCGCCGCGTGTTGTCCCTCAACCCCACCAGAATCCTAAGGTCAAACCCGC
AGCTGTCCAACAACGTGCTGCCCAAAAACCACCTGCTCCACCGAATCCCG
CCAAACCACAAAAGAAGCGTAAGTCCCCGAAACAACCACCGCTGGTGAGC
GGCGCCAACAACCCCACCAGAACCCCAAAGTCAAAGCCGCAACTGCCAAC
TGACCAAAAACCACCTGCTCCACCGAATCCCGCCAAACCACAAAAGAAGC
GCAAGTCCCCGAAACAACCACCGCTGGTGAGCGGCGCCAACAACCCCACC
AGAACCCCAAAGTCAAAGCCGCAACTGCCAACTGACCAAAAACCACCTGC
TCCACCGAATCCCGCCAAACCACAAAAGAAGCGCAAGTCCCCGAAACAAC
CACCGCTGGTGAGCGGCGCCAACAACCCCACCAGAACCCCAAAGTCAAAG
CCGCAACTGCCAACTGACCAAAAACCACCTGCTCCACCGAATCCCGCCAA
ACCACAAAAGAAGCGCAAGTCCCCCTCCAAACAACCACCGGTCGTTAGCG
GCGCCAACAACCCCACCAGAACCCTTGCGCCAAACCCGCAACTGAGCACT
GACCAAAAACCACGTGCTCCACGGAATGCCCCCAAGGGACAACAGAAGCG
CAAGTCCCCCCCCAAACAACCACCAGTGGTTAGCGGCACCAACTTCTCTG
TTGTAAACACCACTACGGAGCTTCGACACCGGAAAGTACCTCAACCAAGC
GGCACCGACGATGCGGATGTTACCACCCTTATGCAATCACATTCGATCAA
CTCCACACAGTCCTTTGATCCGCACGTTCCGACGGACAGCGAAACTGTTT
TTCTGATCGTTTTGGGCTACACAGCCCTTTTTTCAATACTGTTCACTCTG
GCTGTGCTGTATTGGGCTTCTTGA