Ggra9932.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9932.t1
Unique Name	Ggra9932.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	426

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000887_pilon	contig	tig00000887_pilon:127048..128325 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9932	Ggra9932	Gracilaria gracilis GNS1m male	gene	tig00000887_pilon 127048..128325 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9932.t1.start1	Ggra9932.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000887_pilon 127048..127050 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9932.t1.CDS1	Ggra9932.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000887_pilon 127048..128325 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9932.t1.exon1	Ggra9932.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000887_pilon 127048..128325 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9932.t1.stop1	Ggra9932.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000887_pilon 128323..128325 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9932.t1	Ggra9932.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000887_pilon 127048..128325 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000887_pilon:127048..128325+
coding sequence from alignment at tig00000887_pilon:127048..128325+

mRNA sequence

>Ggra9932.t1 ID=Ggra9932.t1|Name=Ggra9932.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=426bp
MSEESFTSQLLKGIKKRANVAHEKALERVRRGEARFELQEEAKEELEKAR
LGAEADEILSRSKPKTALKRRRIITKAVKTKRLSSTTHSDTIEVRQSTVN
NARVIYRAPRKGQPSRPPGKPRANMEYVVRRKKEEKHIQIPHTSDYSDMF
GDKFWQGIDSDFAKKSAKETAEATAANQKIMEERQANREKRKLEREEFFR
EERELESKGLLDERSKGKRRLQFSEKDWVAVDIPIPISQQKSSALARLAQ
TNSKAFKASRGKGNDYVKYLKNGERERRETRAQLDERARRLRERIVSIST
PQVQPSQSRRSEKGCFANGKNVTQKTSRKNRESSCLERYVSGCDDRKKTK
CSRDGYHTEAESDDSESESEDEDVYDISAIDREEARSARIAKMEDKRELK
RLKQSEQEKALRRGEFESDTNGRRQ*

spliced messenger RNA

>Ggra9932.t1 ID=Ggra9932.t1|Name=Ggra9932.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1278bp|location=Sequence derived from alignment at tig00000887_pilon:127048..128325+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGAAGAAAGCTTCACATCTCAGCTCTTGAAGGGTATCAAGAAACG
AGCAAATGTAGCACATGAAAAAGCCTTAGAACGTGTCCGAAGAGGTGAAG
CTAGATTTGAGCTACAGGAAGAAGCAAAGGAGGAGCTTGAAAAGGCAAGA
CTCGGTGCCGAAGCGGATGAGATTTTGAGTCGTTCAAAGCCAAAGACAGC
TCTAAAGCGCAGAAGAATCATAACAAAGGCGGTAAAGACCAAACGTCTCT
CAAGTACGACACATTCAGATACAATAGAAGTTCGTCAGTCGACGGTGAAT
AATGCACGCGTAATTTACCGTGCTCCTCGCAAAGGACAACCTAGTCGCCC
GCCTGGAAAACCTCGTGCTAACATGGAGTATGTGGTGCGAAGGAAGAAGG
AAGAGAAGCATATCCAAATTCCGCACACTTCGGATTATTCTGATATGTTC
GGAGACAAGTTCTGGCAAGGGATTGACTCGGACTTTGCAAAGAAATCAGC
CAAAGAAACTGCGGAGGCCACCGCAGCAAACCAGAAAATTATGGAAGAAC
GGCAGGCCAATCGTGAGAAACGCAAGCTGGAAAGGGAAGAGTTCTTCCGT
GAAGAAAGGGAATTGGAGAGTAAAGGGTTGCTTGATGAGCGAAGCAAAGG
TAAACGACGTCTACAATTCTCCGAAAAGGACTGGGTGGCTGTCGACATTC
CAATTCCCATTTCGCAACAGAAAAGCTCGGCACTTGCCAGACTCGCTCAA
ACAAATTCAAAGGCTTTCAAAGCGTCGAGAGGAAAGGGCAATGACTACGT
GAAATATCTCAAAAATGGGGAACGTGAAAGGAGGGAAACCAGAGCGCAAC
TTGACGAGCGAGCTCGACGTCTCAGAGAGCGAATTGTGAGCATTAGTACA
CCCCAAGTGCAACCATCACAATCTCGTAGGAGCGAGAAAGGTTGCTTCGC
CAATGGCAAGAACGTGACACAGAAAACGTCACGAAAGAATAGAGAAAGCT
CCTGTCTTGAGCGCTACGTATCTGGTTGCGACGATCGGAAGAAAACAAAG
TGCTCCCGAGATGGGTATCACACGGAAGCAGAGAGCGATGATTCTGAAAG
TGAATCAGAGGATGAGGATGTTTACGACATTTCCGCTATTGATCGAGAGG
AAGCAAGAAGTGCGCGGATTGCTAAAATGGAGGACAAGCGAGAGCTTAAA
CGGTTGAAACAGAGCGAACAAGAAAAAGCTCTCCGACGCGGCGAGTTTGA
AAGCGATACCAACGGTAGGCGACAGTAA

protein sequence of Ggra9932.t1

>Ggra9932.t1 ID=Ggra9932.t1|Name=Ggra9932.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=426bp
MSEESFTSQLLKGIKKRANVAHEKALERVRRGEARFELQEEAKEELEKAR
LGAEADEILSRSKPKTALKRRRIITKAVKTKRLSSTTHSDTIEVRQSTVN
NARVIYRAPRKGQPSRPPGKPRANMEYVVRRKKEEKHIQIPHTSDYSDMF
GDKFWQGIDSDFAKKSAKETAEATAANQKIMEERQANREKRKLEREEFFR
EERELESKGLLDERSKGKRRLQFSEKDWVAVDIPIPISQQKSSALARLAQ
TNSKAFKASRGKGNDYVKYLKNGERERRETRAQLDERARRLRERIVSIST
PQVQPSQSRRSEKGCFANGKNVTQKTSRKNRESSCLERYVSGCDDRKKTK
CSRDGYHTEAESDDSESESEDEDVYDISAIDREEARSARIAKMEDKRELK
RLKQSEQEKALRRGEFESDTNGRRQ*

mRNA from alignment at tig00000887_pilon:127048..128325+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9932.t1 ID=Ggra9932.t1|Name=Ggra9932.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1278bp|location=Sequence derived from alignment at tig00000887_pilon:127048..128325+ (Gracilaria gracilis GNS1m male)
ATGAGTGAAGAAAGCTTCACATCTCAGCTCTTGAAGGGTATCAAGAAACG
AGCAAATGTAGCACATGAAAAAGCCTTAGAACGTGTCCGAAGAGGTGAAG
CTAGATTTGAGCTACAGGAAGAAGCAAAGGAGGAGCTTGAAAAGGCAAGA
CTCGGTGCCGAAGCGGATGAGATTTTGAGTCGTTCAAAGCCAAAGACAGC
TCTAAAGCGCAGAAGAATCATAACAAAGGCGGTAAAGACCAAACGTCTCT
CAAGTACGACACATTCAGATACAATAGAAGTTCGTCAGTCGACGGTGAAT
AATGCACGCGTAATTTACCGTGCTCCTCGCAAAGGACAACCTAGTCGCCC
GCCTGGAAAACCTCGTGCTAACATGGAGTATGTGGTGCGAAGGAAGAAGG
AAGAGAAGCATATCCAAATTCCGCACACTTCGGATTATTCTGATATGTTC
GGAGACAAGTTCTGGCAAGGGATTGACTCGGACTTTGCAAAGAAATCAGC
CAAAGAAACTGCGGAGGCCACCGCAGCAAACCAGAAAATTATGGAAGAAC
GGCAGGCCAATCGTGAGAAACGCAAGCTGGAAAGGGAAGAGTTCTTCCGT
GAAGAAAGGGAATTGGAGAGTAAAGGGTTGCTTGATGAGCGAAGCAAAGG
TAAACGACGTCTACAATTCTCCGAAAAGGACTGGGTGGCTGTCGACATTC
CAATTCCCATTTCGCAACAGAAAAGCTCGGCACTTGCCAGACTCGCTCAA
ACAAATTCAAAGGCTTTCAAAGCGTCGAGAGGAAAGGGCAATGACTACGT
GAAATATCTCAAAAATGGGGAACGTGAAAGGAGGGAAACCAGAGCGCAAC
TTGACGAGCGAGCTCGACGTCTCAGAGAGCGAATTGTGAGCATTAGTACA
CCCCAAGTGCAACCATCACAATCTCGTAGGAGCGAGAAAGGTTGCTTCGC
CAATGGCAAGAACGTGACACAGAAAACGTCACGAAAGAATAGAGAAAGCT
CCTGTCTTGAGCGCTACGTATCTGGTTGCGACGATCGGAAGAAAACAAAG
TGCTCCCGAGATGGGTATCACACGGAAGCAGAGAGCGATGATTCTGAAAG
TGAATCAGAGGATGAGGATGTTTACGACATTTCCGCTATTGATCGAGAGG
AAGCAAGAAGTGCGCGGATTGCTAAAATGGAGGACAAGCGAGAGCTTAAA
CGGTTGAAACAGAGCGAACAAGAAAAAGCTCTCCGACGCGGCGAGTTTGA
AAGCGATACCAACGGTAGGCGACAGTAA

Coding sequence (CDS) from alignment at tig00000887_pilon:127048..128325+

>Ggra9932.t1 ID=Ggra9932.t1|Name=Ggra9932.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1278bp|location=Sequence derived from alignment at tig00000887_pilon:127048..128325+ (Gracilaria gracilis GNS1m male)
ATGAGTGAAGAAAGCTTCACATCTCAGCTCTTGAAGGGTATCAAGAAACG
AGCAAATGTAGCACATGAAAAAGCCTTAGAACGTGTCCGAAGAGGTGAAG
CTAGATTTGAGCTACAGGAAGAAGCAAAGGAGGAGCTTGAAAAGGCAAGA
CTCGGTGCCGAAGCGGATGAGATTTTGAGTCGTTCAAAGCCAAAGACAGC
TCTAAAGCGCAGAAGAATCATAACAAAGGCGGTAAAGACCAAACGTCTCT
CAAGTACGACACATTCAGATACAATAGAAGTTCGTCAGTCGACGGTGAAT
AATGCACGCGTAATTTACCGTGCTCCTCGCAAAGGACAACCTAGTCGCCC
GCCTGGAAAACCTCGTGCTAACATGGAGTATGTGGTGCGAAGGAAGAAGG
AAGAGAAGCATATCCAAATTCCGCACACTTCGGATTATTCTGATATGTTC
GGAGACAAGTTCTGGCAAGGGATTGACTCGGACTTTGCAAAGAAATCAGC
CAAAGAAACTGCGGAGGCCACCGCAGCAAACCAGAAAATTATGGAAGAAC
GGCAGGCCAATCGTGAGAAACGCAAGCTGGAAAGGGAAGAGTTCTTCCGT
GAAGAAAGGGAATTGGAGAGTAAAGGGTTGCTTGATGAGCGAAGCAAAGG
TAAACGACGTCTACAATTCTCCGAAAAGGACTGGGTGGCTGTCGACATTC
CAATTCCCATTTCGCAACAGAAAAGCTCGGCACTTGCCAGACTCGCTCAA
ACAAATTCAAAGGCTTTCAAAGCGTCGAGAGGAAAGGGCAATGACTACGT
GAAATATCTCAAAAATGGGGAACGTGAAAGGAGGGAAACCAGAGCGCAAC
TTGACGAGCGAGCTCGACGTCTCAGAGAGCGAATTGTGAGCATTAGTACA
CCCCAAGTGCAACCATCACAATCTCGTAGGAGCGAGAAAGGTTGCTTCGC
CAATGGCAAGAACGTGACACAGAAAACGTCACGAAAGAATAGAGAAAGCT
CCTGTCTTGAGCGCTACGTATCTGGTTGCGACGATCGGAAGAAAACAAAG
TGCTCCCGAGATGGGTATCACACGGAAGCAGAGAGCGATGATTCTGAAAG
TGAATCAGAGGATGAGGATGTTTACGACATTTCCGCTATTGATCGAGAGG
AAGCAAGAAGTGCGCGGATTGCTAAAATGGAGGACAAGCGAGAGCTTAAA
CGGTTGAAACAGAGCGAACAAGAAAAAGCTCTCCGACGCGGCGAGTTTGA
AAGCGATACCAACGGTAGGCGACAGTAA