Ggra9930.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9930.t1
Unique NameGgra9930.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length214
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000887_piloncontigtig00000887_pilon:120184..120825 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog157072.XP_008863733.1
PFAMsMob1_phocein
Max annot lvl2759|Eukaryota
KEGG koko:K06685
KEGG Pathwayko04111,ko04390,ko04391,ko04392,map04111,map04390,map04391,map04392
KEGG ModuleM00683
Evalue2.69e-78
EggNOG OGsKOG0440@1|root,KOG0440@2759|Eukaryota
Descriptionhippo signaling
COG categoryS
BRITEko00000,ko00001,ko00002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9930Ggra9930Gracilaria gracilis GNS1m malegenetig00000887_pilon 120184..120825 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9930.t1.start1Ggra9930.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000887_pilon 120184..120186 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9930.t1.CDS1Ggra9930.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000887_pilon 120184..120825 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9930.t1.exon1Ggra9930.t1.exon1Gracilaria gracilis GNS1m maleexontig00000887_pilon 120184..120825 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9930.t1.stop1Ggra9930.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000887_pilon 120823..120825 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9930.t1Ggra9930.t1Gracilaria gracilis GNS1m malepolypeptidetig00000887_pilon 120184..120825 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9930.t1 ID=Ggra9930.t1|Name=Ggra9930.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=214bp
MFSVFDRNKTFKPRRRTEASNARYEVHKLAHEVLKASLDTGNLREAVKVP
DGYDVNDWISVNVVDLFNQVNLIYGSMCDKCTPESCPIMSASPKYEYLWA
DSDRYKSPIKVSAPRYIDLLMDWVDKKLSDEELFPTMEESKYPDNFRPIV
KTIMRRLFRVYAHIFHAHLDEIVECRAEAHLSTCFRHFMYFGQLFSLLPP
KELEPLKDVIASL*
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spliced messenger RNA

>Ggra9930.t1 ID=Ggra9930.t1|Name=Ggra9930.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=642bp|location=Sequence derived from alignment at tig00000887_pilon:120184..120825+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCTCAGTATTCGACAGAAATAAGACGTTCAAGCCGAGGCGAAGGAC
GGAGGCATCCAATGCGCGCTACGAGGTTCACAAACTGGCGCACGAAGTGC
TCAAAGCCTCACTCGATACTGGCAATTTACGGGAAGCCGTTAAGGTTCCC
GATGGATACGACGTAAACGACTGGATAAGCGTCAATGTGGTCGATCTTTT
CAACCAAGTGAATCTGATTTATGGCAGTATGTGCGACAAATGTACGCCAG
AATCCTGCCCTATAATGAGCGCTTCTCCAAAGTATGAGTATTTGTGGGCA
GACAGCGATCGCTACAAAAGTCCTATCAAGGTTTCCGCGCCGCGCTACAT
CGATTTGCTCATGGACTGGGTCGACAAAAAGCTCTCTGATGAAGAACTGT
TCCCCACAATGGAGGAGTCAAAGTACCCTGATAACTTTCGGCCTATTGTG
AAGACTATTATGCGCAGGCTGTTTCGCGTTTACGCGCACATCTTTCACGC
CCATCTCGACGAAATTGTTGAATGCAGAGCAGAAGCCCACCTGAGTACAT
GTTTTCGTCACTTTATGTACTTCGGGCAACTATTCAGTCTCCTGCCGCCC
AAGGAGCTCGAACCATTGAAAGACGTCATTGCATCGCTGTAA
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protein sequence of Ggra9930.t1

>Ggra9930.t1 ID=Ggra9930.t1|Name=Ggra9930.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=214bp
MFSVFDRNKTFKPRRRTEASNARYEVHKLAHEVLKASLDTGNLREAVKVP
DGYDVNDWISVNVVDLFNQVNLIYGSMCDKCTPESCPIMSASPKYEYLWA
DSDRYKSPIKVSAPRYIDLLMDWVDKKLSDEELFPTMEESKYPDNFRPIV
KTIMRRLFRVYAHIFHAHLDEIVECRAEAHLSTCFRHFMYFGQLFSLLPP
KELEPLKDVIASL*
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mRNA from alignment at tig00000887_pilon:120184..120825+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9930.t1 ID=Ggra9930.t1|Name=Ggra9930.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=642bp|location=Sequence derived from alignment at tig00000887_pilon:120184..120825+ (Gracilaria gracilis GNS1m male)
ATGTTCTCAGTATTCGACAGAAATAAGACGTTCAAGCCGAGGCGAAGGAC
GGAGGCATCCAATGCGCGCTACGAGGTTCACAAACTGGCGCACGAAGTGC
TCAAAGCCTCACTCGATACTGGCAATTTACGGGAAGCCGTTAAGGTTCCC
GATGGATACGACGTAAACGACTGGATAAGCGTCAATGTGGTCGATCTTTT
CAACCAAGTGAATCTGATTTATGGCAGTATGTGCGACAAATGTACGCCAG
AATCCTGCCCTATAATGAGCGCTTCTCCAAAGTATGAGTATTTGTGGGCA
GACAGCGATCGCTACAAAAGTCCTATCAAGGTTTCCGCGCCGCGCTACAT
CGATTTGCTCATGGACTGGGTCGACAAAAAGCTCTCTGATGAAGAACTGT
TCCCCACAATGGAGGAGTCAAAGTACCCTGATAACTTTCGGCCTATTGTG
AAGACTATTATGCGCAGGCTGTTTCGCGTTTACGCGCACATCTTTCACGC
CCATCTCGACGAAATTGTTGAATGCAGAGCAGAAGCCCACCTGAGTACAT
GTTTTCGTCACTTTATGTACTTCGGGCAACTATTCAGTCTCCTGCCGCCC
AAGGAGCTCGAACCATTGAAAGACGTCATTGCATCGCTGTAA
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Coding sequence (CDS) from alignment at tig00000887_pilon:120184..120825+

>Ggra9930.t1 ID=Ggra9930.t1|Name=Ggra9930.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=642bp|location=Sequence derived from alignment at tig00000887_pilon:120184..120825+ (Gracilaria gracilis GNS1m male)
ATGTTCTCAGTATTCGACAGAAATAAGACGTTCAAGCCGAGGCGAAGGAC
GGAGGCATCCAATGCGCGCTACGAGGTTCACAAACTGGCGCACGAAGTGC
TCAAAGCCTCACTCGATACTGGCAATTTACGGGAAGCCGTTAAGGTTCCC
GATGGATACGACGTAAACGACTGGATAAGCGTCAATGTGGTCGATCTTTT
CAACCAAGTGAATCTGATTTATGGCAGTATGTGCGACAAATGTACGCCAG
AATCCTGCCCTATAATGAGCGCTTCTCCAAAGTATGAGTATTTGTGGGCA
GACAGCGATCGCTACAAAAGTCCTATCAAGGTTTCCGCGCCGCGCTACAT
CGATTTGCTCATGGACTGGGTCGACAAAAAGCTCTCTGATGAAGAACTGT
TCCCCACAATGGAGGAGTCAAAGTACCCTGATAACTTTCGGCCTATTGTG
AAGACTATTATGCGCAGGCTGTTTCGCGTTTACGCGCACATCTTTCACGC
CCATCTCGACGAAATTGTTGAATGCAGAGCAGAAGCCCACCTGAGTACAT
GTTTTCGTCACTTTATGTACTTCGGGCAACTATTCAGTCTCCTGCCGCCC
AAGGAGCTCGAACCATTGAAAGACGTCATTGCATCGCTGTAA
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