Ggra9927.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9927.t1
Unique NameGgra9927.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length758
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000887_piloncontigtig00000887_pilon:112620..115042 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog794903.OPIT5_14840
Max annot lvl414999|Opitutae
Evalue5.38e-47
EggNOG OGsCOG1636@1|root,COG1636@2|Bacteria,46YPJ@74201|Verrucomicrobia,3K9XZ@414999|Opitutae
DescriptionCatalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
COG categoryC
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9927Ggra9927Gracilaria gracilis GNS1m malegenetig00000887_pilon 112620..115042 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9927.t1Ggra9927.t1Gracilaria gracilis GNS1m malepolypeptidetig00000887_pilon 112620..115042 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9927.t1.stop1Ggra9927.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000887_pilon 112620..112622 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9927.t1.CDS1Ggra9927.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000887_pilon 112620..113838 -
Ggra9927.t1.CDS2Ggra9927.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000887_pilon 113908..114001 -
Ggra9927.t1.CDS3Ggra9927.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000887_pilon 114082..115042 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9927.t1.exon1Ggra9927.t1.exon1Gracilaria gracilis GNS1m maleexontig00000887_pilon 112620..113838 -
Ggra9927.t1.exon2Ggra9927.t1.exon2Gracilaria gracilis GNS1m maleexontig00000887_pilon 113908..114001 -
Ggra9927.t1.exon3Ggra9927.t1.exon3Gracilaria gracilis GNS1m maleexontig00000887_pilon 114082..115042 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9927.t1.intron1Ggra9927.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000887_pilon 113839..113907 -
Ggra9927.t1.intron2Ggra9927.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000887_pilon 114002..114081 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9927.t1.start1Ggra9927.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000887_pilon 115040..115042 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9927.t1 ID=Ggra9927.t1|Name=Ggra9927.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=758bp
MGSVLCKEELSSFCRVIDERTSQCKSRLPWHSEVEVDWNGCRKFGALPPP
GQHPRLFFTAEEIPRILARFTHSEIGDVLKTVLGNVKTAFLKDFYAKFEE
LPEEEVLKPSKETIERFFTPDEIRNVGFLGTFVSGVLDDDEDLMEKAKTS
VLFYARVILESKNQAETNGFDEKPLNVWKTERWDLHIGWMFGGSSYALVY
DLMFNILDANERSIIRRAITTAVKGRRSWGMGWPGRRIQSNWAAYHGDLL
SLCAVVEGEEGFDKEVYKSFSELMVNFLDYAVYDSGHTVEDFYALNLGMR
EGSMSFLVMARRGHNIFNHPHYKQIWANWIPFALEPHNSGKVYGGSSGNF
YDYPTSAIVAKYMFPSNPVIDYIYKRYMSLNGIQFGKLKKLQSRLVVLAF
SLPSFSSNVSVPDTSELNLPLDFLCRPRGKVVMKSDWTDQALWFTLDARP
DCFLIGHDACSRGAFVLNADGRAWGFCPEWHKFRDSDDYSLPHIDGIGQK
YKAPFVKLLDFSSGGDKYSFTSADLTYAYNWTWTTWANETSDLSSRGFEY
EPNDPADFGFNVWWAPRKLYGEPNVGFQGLHQWRQRFAEVDKVYRSALMI
RAPRPYVILVDDVKKDDEEHTYSWAMTTPDDVHLFSFDGVNAILSETKRN
ACRRFLVKNLSNKIQDLECSFREVPKLPESAPRDQKARQLVFKTVSKGTR
FIFLLWSMPTADSKLPTTKWIETDALLRVSDDENGTTQIIQFTAGSIGET
VMTPVEL*
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spliced messenger RNA

>Ggra9927.t1 ID=Ggra9927.t1|Name=Ggra9927.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2274bp|location=Sequence derived from alignment at tig00000887_pilon:112620..115042- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAAGTGTTTTGTGCAAAGAAGAACTATCTTCTTTTTGCCGAGTTAT
CGATGAACGAACAAGCCAGTGCAAGTCTAGACTACCATGGCACTCCGAGG
TTGAAGTAGACTGGAACGGCTGTCGTAAATTTGGTGCTCTTCCCCCTCCT
GGACAACATCCTCGTCTGTTTTTCACAGCAGAAGAGATCCCAAGAATTTT
GGCTAGGTTTACACATTCAGAAATCGGTGATGTGTTGAAGACTGTGCTAG
GAAATGTTAAGACTGCGTTTCTCAAAGACTTTTATGCAAAGTTTGAAGAA
TTGCCAGAAGAAGAAGTACTCAAGCCCTCCAAAGAAACGATAGAACGTTT
TTTTACACCGGACGAGATAAGGAATGTTGGTTTCCTAGGAACTTTCGTAT
CTGGCGTTTTGGATGATGATGAAGATTTAATGGAGAAAGCTAAGACAAGT
GTTTTGTTCTATGCAAGAGTGATACTTGAGTCCAAGAACCAAGCTGAGAC
AAATGGGTTTGATGAGAAACCACTTAACGTCTGGAAGACAGAACGATGGG
ATCTTCATATTGGATGGATGTTCGGTGGCTCAAGCTACGCACTGGTCTAC
GACCTTATGTTCAATATCTTGGACGCAAATGAGAGAAGTATCATACGTAG
AGCGATAACAACCGCTGTGAAGGGGAGAAGAAGTTGGGGTATGGGCTGGC
CCGGTAGAAGGATTCAGAGTAATTGGGCTGCGTACCACGGAGATTTGCTT
TCACTCTGTGCAGTGGTCGAAGGAGAAGAGGGATTTGACAAAGAAGTGTA
CAAATCTTTTTCTGAGCTGATGGTGAACTTTCTGGACTATGCCGTTTATG
ATAGTGGGCATACGGTGGAAGATTTTTATGCTTTGAACCTTGGAATGAGA
GAGGGTTCCATGAGTTTCTTGGTCATGGCTCGTAGAGGACATAACATCTT
CAACCATCCACACTACAAGCAAATATGGGCCAACTGGATACCGTTTGCTT
TGGAACCTCACAATAGTGGGAAGGTTTATGGAGGTTCATCTGGTAATTTC
TACGACTACCCTACTTCTGCCATCGTTGCCAAGTACATGTTTCCCAGTAA
CCCTGTTATTGACTATATCTACAAACGTTACATGTCTCTTAATGGAATTC
AGTTTGGAAAACTGAAGAAGCTACAATCTCGACTTGTGGTCCTTGCATTT
TCTCTACCGTCGTTTTCATCCAATGTATCAGTTCCTGATACAAGCGAACT
GAATCTTCCACTGGATTTCTTGTGCCGTCCACGCGGAAAAGTTGTGATGA
AATCAGACTGGACTGACCAAGCTTTGTGGTTTACGCTTGATGCCCGTCCG
GATTGTTTTCTTATAGGTCATGATGCATGTTCTCGAGGTGCATTCGTTCT
CAACGCTGATGGACGGGCTTGGGGTTTTTGTCCTGAGTGGCACAAGTTCA
GAGATTCTGATGACTATTCCTTGCCGCACATTGATGGCATTGGGCAGAAA
TATAAGGCCCCCTTTGTGAAGCTGCTTGATTTCTCAAGCGGCGGAGATAA
GTATTCGTTTACCTCCGCAGATTTGACATATGCGTATAATTGGACATGGA
CTACGTGGGCAAATGAAACTTCGGATCTGTCAAGCAGGGGATTTGAGTAT
GAACCTAACGACCCGGCTGATTTCGGCTTCAATGTGTGGTGGGCGCCACG
AAAGTTGTATGGTGAACCCAATGTAGGTTTTCAAGGTTTGCATCAATGGC
GCCAAAGATTTGCGGAAGTAGATAAGGTTTATCGCAGCGCTCTAATGATC
CGCGCCCCACGCCCCTACGTCATCTTAGTAGATGATGTCAAGAAGGATGA
CGAAGAACATACATATTCATGGGCCATGACGACCCCCGACGACGTTCATC
TGTTCTCCTTTGATGGCGTTAACGCTATTCTATCAGAGACGAAGAGAAAC
GCTTGCAGGCGATTCCTCGTCAAGAATCTCTCGAACAAGATTCAGGACTT
GGAATGCTCATTTCGGGAGGTACCGAAACTACCTGAGTCCGCCCCACGCG
ATCAGAAAGCGAGGCAGTTGGTCTTTAAGACTGTTTCAAAGGGAACGCGA
TTCATCTTTCTTCTCTGGAGCATGCCTACGGCGGATTCAAAGCTGCCGAC
TACAAAATGGATTGAAACGGATGCACTTCTGAGAGTTTCGGACGATGAAA
ATGGAACAACCCAGATTATTCAGTTTACTGCTGGTAGTATCGGGGAAACT
GTCATGACGCCGGTTGAGTTGTGA
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protein sequence of Ggra9927.t1

>Ggra9927.t1 ID=Ggra9927.t1|Name=Ggra9927.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=758bp
MGSVLCKEELSSFCRVIDERTSQCKSRLPWHSEVEVDWNGCRKFGALPPP
GQHPRLFFTAEEIPRILARFTHSEIGDVLKTVLGNVKTAFLKDFYAKFEE
LPEEEVLKPSKETIERFFTPDEIRNVGFLGTFVSGVLDDDEDLMEKAKTS
VLFYARVILESKNQAETNGFDEKPLNVWKTERWDLHIGWMFGGSSYALVY
DLMFNILDANERSIIRRAITTAVKGRRSWGMGWPGRRIQSNWAAYHGDLL
SLCAVVEGEEGFDKEVYKSFSELMVNFLDYAVYDSGHTVEDFYALNLGMR
EGSMSFLVMARRGHNIFNHPHYKQIWANWIPFALEPHNSGKVYGGSSGNF
YDYPTSAIVAKYMFPSNPVIDYIYKRYMSLNGIQFGKLKKLQSRLVVLAF
SLPSFSSNVSVPDTSELNLPLDFLCRPRGKVVMKSDWTDQALWFTLDARP
DCFLIGHDACSRGAFVLNADGRAWGFCPEWHKFRDSDDYSLPHIDGIGQK
YKAPFVKLLDFSSGGDKYSFTSADLTYAYNWTWTTWANETSDLSSRGFEY
EPNDPADFGFNVWWAPRKLYGEPNVGFQGLHQWRQRFAEVDKVYRSALMI
RAPRPYVILVDDVKKDDEEHTYSWAMTTPDDVHLFSFDGVNAILSETKRN
ACRRFLVKNLSNKIQDLECSFREVPKLPESAPRDQKARQLVFKTVSKGTR
FIFLLWSMPTADSKLPTTKWIETDALLRVSDDENGTTQIIQFTAGSIGET
VMTPVEL*
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mRNA from alignment at tig00000887_pilon:112620..115042-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9927.t1 ID=Ggra9927.t1|Name=Ggra9927.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2423bp|location=Sequence derived from alignment at tig00000887_pilon:112620..115042- (Gracilaria gracilis GNS1m male)
ATGGGAAGTGTTTTGTGCAAAGAAGAACTATCTTCTTTTTGCCGAGTTAT
CGATGAACGAACAAGCCAGTGCAAGTCTAGACTACCATGGCACTCCGAGG
TTGAAGTAGACTGGAACGGCTGTCGTAAATTTGGTGCTCTTCCCCCTCCT
GGACAACATCCTCGTCTGTTTTTCACAGCAGAAGAGATCCCAAGAATTTT
GGCTAGGTTTACACATTCAGAAATCGGTGATGTGTTGAAGACTGTGCTAG
GAAATGTTAAGACTGCGTTTCTCAAAGACTTTTATGCAAAGTTTGAAGAA
TTGCCAGAAGAAGAAGTACTCAAGCCCTCCAAAGAAACGATAGAACGTTT
TTTTACACCGGACGAGATAAGGAATGTTGGTTTCCTAGGAACTTTCGTAT
CTGGCGTTTTGGATGATGATGAAGATTTAATGGAGAAAGCTAAGACAAGT
GTTTTGTTCTATGCAAGAGTGATACTTGAGTCCAAGAACCAAGCTGAGAC
AAATGGGTTTGATGAGAAACCACTTAACGTCTGGAAGACAGAACGATGGG
ATCTTCATATTGGATGGATGTTCGGTGGCTCAAGCTACGCACTGGTCTAC
GACCTTATGTTCAATATCTTGGACGCAAATGAGAGAAGTATCATACGTAG
AGCGATAACAACCGCTGTGAAGGGGAGAAGAAGTTGGGGTATGGGCTGGC
CCGGTAGAAGGATTCAGAGTAATTGGGCTGCGTACCACGGAGATTTGCTT
TCACTCTGTGCAGTGGTCGAAGGAGAAGAGGGATTTGACAAAGAAGTGTA
CAAATCTTTTTCTGAGCTGATGGTGAACTTTCTGGACTATGCCGTTTATG
ATAGTGGGCATACGGTGGAAGATTTTTATGCTTTGAACCTTGGAATGAGA
GAGGGTTCCATGAGTTTCTTGGTCATGGCTCGTAGAGGACATAACATCTT
CAACCATCCACGTAAGTCTTTGCATATGGTATTCGCATCGAAAGAATATG
AAATCTTGTCACAACTAACAAATATGTCTTGTGTACAATAGACTACAAGC
AAATATGGGCCAACTGGATACCGTTTGCTTTGGAACCTCACAATAGTGGG
AAGGTTTATGGAGGTTCATCTGGTAATTTCTACGAGTAAGTGTCACATTC
TCTTTTGCACTGAATGGGAAACGAAGAACTGACATTCGTCATTCCTTTAT
ATAGCTACCCTACTTCTGCCATCGTTGCCAAGTACATGTTTCCCAGTAAC
CCTGTTATTGACTATATCTACAAACGTTACATGTCTCTTAATGGAATTCA
GTTTGGAAAACTGAAGAAGCTACAATCTCGACTTGTGGTCCTTGCATTTT
CTCTACCGTCGTTTTCATCCAATGTATCAGTTCCTGATACAAGCGAACTG
AATCTTCCACTGGATTTCTTGTGCCGTCCACGCGGAAAAGTTGTGATGAA
ATCAGACTGGACTGACCAAGCTTTGTGGTTTACGCTTGATGCCCGTCCGG
ATTGTTTTCTTATAGGTCATGATGCATGTTCTCGAGGTGCATTCGTTCTC
AACGCTGATGGACGGGCTTGGGGTTTTTGTCCTGAGTGGCACAAGTTCAG
AGATTCTGATGACTATTCCTTGCCGCACATTGATGGCATTGGGCAGAAAT
ATAAGGCCCCCTTTGTGAAGCTGCTTGATTTCTCAAGCGGCGGAGATAAG
TATTCGTTTACCTCCGCAGATTTGACATATGCGTATAATTGGACATGGAC
TACGTGGGCAAATGAAACTTCGGATCTGTCAAGCAGGGGATTTGAGTATG
AACCTAACGACCCGGCTGATTTCGGCTTCAATGTGTGGTGGGCGCCACGA
AAGTTGTATGGTGAACCCAATGTAGGTTTTCAAGGTTTGCATCAATGGCG
CCAAAGATTTGCGGAAGTAGATAAGGTTTATCGCAGCGCTCTAATGATCC
GCGCCCCACGCCCCTACGTCATCTTAGTAGATGATGTCAAGAAGGATGAC
GAAGAACATACATATTCATGGGCCATGACGACCCCCGACGACGTTCATCT
GTTCTCCTTTGATGGCGTTAACGCTATTCTATCAGAGACGAAGAGAAACG
CTTGCAGGCGATTCCTCGTCAAGAATCTCTCGAACAAGATTCAGGACTTG
GAATGCTCATTTCGGGAGGTACCGAAACTACCTGAGTCCGCCCCACGCGA
TCAGAAAGCGAGGCAGTTGGTCTTTAAGACTGTTTCAAAGGGAACGCGAT
TCATCTTTCTTCTCTGGAGCATGCCTACGGCGGATTCAAAGCTGCCGACT
ACAAAATGGATTGAAACGGATGCACTTCTGAGAGTTTCGGACGATGAAAA
TGGAACAACCCAGATTATTCAGTTTACTGCTGGTAGTATCGGGGAAACTG
TCATGACGCCGGTTGAGTTGTGA
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Coding sequence (CDS) from alignment at tig00000887_pilon:112620..115042-

>Ggra9927.t1 ID=Ggra9927.t1|Name=Ggra9927.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2274bp|location=Sequence derived from alignment at tig00000887_pilon:112620..115042- (Gracilaria gracilis GNS1m male)
ATGGGAAGTGTTTTGTGCAAAGAAGAACTATCTTCTTTTTGCCGAGTTAT
CGATGAACGAACAAGCCAGTGCAAGTCTAGACTACCATGGCACTCCGAGG
TTGAAGTAGACTGGAACGGCTGTCGTAAATTTGGTGCTCTTCCCCCTCCT
GGACAACATCCTCGTCTGTTTTTCACAGCAGAAGAGATCCCAAGAATTTT
GGCTAGGTTTACACATTCAGAAATCGGTGATGTGTTGAAGACTGTGCTAG
GAAATGTTAAGACTGCGTTTCTCAAAGACTTTTATGCAAAGTTTGAAGAA
TTGCCAGAAGAAGAAGTACTCAAGCCCTCCAAAGAAACGATAGAACGTTT
TTTTACACCGGACGAGATAAGGAATGTTGGTTTCCTAGGAACTTTCGTAT
CTGGCGTTTTGGATGATGATGAAGATTTAATGGAGAAAGCTAAGACAAGT
GTTTTGTTCTATGCAAGAGTGATACTTGAGTCCAAGAACCAAGCTGAGAC
AAATGGGTTTGATGAGAAACCACTTAACGTCTGGAAGACAGAACGATGGG
ATCTTCATATTGGATGGATGTTCGGTGGCTCAAGCTACGCACTGGTCTAC
GACCTTATGTTCAATATCTTGGACGCAAATGAGAGAAGTATCATACGTAG
AGCGATAACAACCGCTGTGAAGGGGAGAAGAAGTTGGGGTATGGGCTGGC
CCGGTAGAAGGATTCAGAGTAATTGGGCTGCGTACCACGGAGATTTGCTT
TCACTCTGTGCAGTGGTCGAAGGAGAAGAGGGATTTGACAAAGAAGTGTA
CAAATCTTTTTCTGAGCTGATGGTGAACTTTCTGGACTATGCCGTTTATG
ATAGTGGGCATACGGTGGAAGATTTTTATGCTTTGAACCTTGGAATGAGA
GAGGGTTCCATGAGTTTCTTGGTCATGGCTCGTAGAGGACATAACATCTT
CAACCATCCACACTACAAGCAAATATGGGCCAACTGGATACCGTTTGCTT
TGGAACCTCACAATAGTGGGAAGGTTTATGGAGGTTCATCTGGTAATTTC
TACGACTACCCTACTTCTGCCATCGTTGCCAAGTACATGTTTCCCAGTAA
CCCTGTTATTGACTATATCTACAAACGTTACATGTCTCTTAATGGAATTC
AGTTTGGAAAACTGAAGAAGCTACAATCTCGACTTGTGGTCCTTGCATTT
TCTCTACCGTCGTTTTCATCCAATGTATCAGTTCCTGATACAAGCGAACT
GAATCTTCCACTGGATTTCTTGTGCCGTCCACGCGGAAAAGTTGTGATGA
AATCAGACTGGACTGACCAAGCTTTGTGGTTTACGCTTGATGCCCGTCCG
GATTGTTTTCTTATAGGTCATGATGCATGTTCTCGAGGTGCATTCGTTCT
CAACGCTGATGGACGGGCTTGGGGTTTTTGTCCTGAGTGGCACAAGTTCA
GAGATTCTGATGACTATTCCTTGCCGCACATTGATGGCATTGGGCAGAAA
TATAAGGCCCCCTTTGTGAAGCTGCTTGATTTCTCAAGCGGCGGAGATAA
GTATTCGTTTACCTCCGCAGATTTGACATATGCGTATAATTGGACATGGA
CTACGTGGGCAAATGAAACTTCGGATCTGTCAAGCAGGGGATTTGAGTAT
GAACCTAACGACCCGGCTGATTTCGGCTTCAATGTGTGGTGGGCGCCACG
AAAGTTGTATGGTGAACCCAATGTAGGTTTTCAAGGTTTGCATCAATGGC
GCCAAAGATTTGCGGAAGTAGATAAGGTTTATCGCAGCGCTCTAATGATC
CGCGCCCCACGCCCCTACGTCATCTTAGTAGATGATGTCAAGAAGGATGA
CGAAGAACATACATATTCATGGGCCATGACGACCCCCGACGACGTTCATC
TGTTCTCCTTTGATGGCGTTAACGCTATTCTATCAGAGACGAAGAGAAAC
GCTTGCAGGCGATTCCTCGTCAAGAATCTCTCGAACAAGATTCAGGACTT
GGAATGCTCATTTCGGGAGGTACCGAAACTACCTGAGTCCGCCCCACGCG
ATCAGAAAGCGAGGCAGTTGGTCTTTAAGACTGTTTCAAAGGGAACGCGA
TTCATCTTTCTTCTCTGGAGCATGCCTACGGCGGATTCAAAGCTGCCGAC
TACAAAATGGATTGAAACGGATGCACTTCTGAGAGTTTCGGACGATGAAA
ATGGAACAACCCAGATTATTCAGTTTACTGCTGGTAGTATCGGGGAAACT
GTCATGACGCCGGTTGAGTTGTGA
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