Ggra9924.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9924.t1
Unique NameGgra9924.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length239
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000887_piloncontigtig00000887_pilon:107440..108156 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog109871.XP_006681095.1
PFAMsG-patch_2
Max annot lvl4751|Fungi
Evalue2.2e-07
EggNOG OGsKOG4315@1|root,KOG4315@2759|Eukaryota,38EYB@33154|Opisthokonta,3Q3C3@4751|Fungi
DescriptionG-patch domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9924Ggra9924Gracilaria gracilis GNS1m malegenetig00000887_pilon 107440..108156 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9924.t1.stop1Ggra9924.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000887_pilon 107440..107442 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9924.t1.CDS1Ggra9924.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000887_pilon 107440..108156 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9924.t1.exon1Ggra9924.t1.exon1Gracilaria gracilis GNS1m maleexontig00000887_pilon 107440..108156 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9924.t1.start1Ggra9924.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000887_pilon 108154..108156 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9924.t1Ggra9924.t1Gracilaria gracilis GNS1m malepolypeptidetig00000887_pilon 107440..108156 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9924.t1 ID=Ggra9924.t1|Name=Ggra9924.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=239bp
MSFKLSLNRAAVRRKRGRLQVSSTAQPRSVAPAFGQEDDSEDSDESPRAQ
KVTTISAHVDEKPKAEESEQLKEGHVEHQGGNKSDAKISQVATIVERRKE
ANISSAIPREQKDEALFRYEVANCPDEADVHSYAQRPVDGFGDMMLRSMG
WNGKQALEEKYESPVPRPNRLGLGAKPSALKKPTRRKRLRETNSKTDSTP
NVYSEENLQNGTDEGVTVNSKPSRSELNHRAISKRPRG*
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spliced messenger RNA

>Ggra9924.t1 ID=Ggra9924.t1|Name=Ggra9924.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=717bp|location=Sequence derived from alignment at tig00000887_pilon:107440..108156- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCTTTAAACTTAGCCTCAACCGTGCCGCAGTGCGTCGAAAACGTGG
TCGTCTTCAGGTCTCTTCGACAGCTCAACCGCGTTCTGTCGCACCCGCTT
TTGGACAAGAAGATGATTCAGAGGATTCAGACGAGTCACCTCGAGCCCAA
AAGGTTACTACAATCTCCGCACATGTGGATGAAAAACCCAAAGCGGAAGA
GTCAGAACAGCTCAAAGAAGGGCACGTAGAACATCAGGGTGGGAACAAAT
CCGACGCAAAGATTTCCCAGGTTGCGACCATAGTCGAACGAAGAAAAGAG
GCGAACATATCATCCGCTATCCCTCGAGAGCAGAAAGACGAGGCTCTCTT
TCGATATGAAGTGGCGAATTGTCCTGATGAGGCAGATGTTCATTCATATG
CCCAACGCCCAGTTGACGGATTCGGCGATATGATGCTGAGAAGCATGGGA
TGGAACGGTAAGCAGGCGTTGGAAGAGAAATACGAATCTCCAGTACCAAG
ACCGAATCGACTAGGACTTGGGGCAAAACCTTCGGCCCTCAAGAAGCCAA
CACGACGGAAGAGATTGAGGGAAACCAATAGCAAAACTGATTCCACTCCT
AACGTATACTCTGAGGAAAACTTACAGAACGGTACGGATGAGGGTGTCAC
TGTTAATAGTAAACCATCGCGTTCAGAACTCAACCACAGGGCTATCTCGA
AAAGGCCCAGAGGATAA
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protein sequence of Ggra9924.t1

>Ggra9924.t1 ID=Ggra9924.t1|Name=Ggra9924.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=239bp
MSFKLSLNRAAVRRKRGRLQVSSTAQPRSVAPAFGQEDDSEDSDESPRAQ
KVTTISAHVDEKPKAEESEQLKEGHVEHQGGNKSDAKISQVATIVERRKE
ANISSAIPREQKDEALFRYEVANCPDEADVHSYAQRPVDGFGDMMLRSMG
WNGKQALEEKYESPVPRPNRLGLGAKPSALKKPTRRKRLRETNSKTDSTP
NVYSEENLQNGTDEGVTVNSKPSRSELNHRAISKRPRG*
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mRNA from alignment at tig00000887_pilon:107440..108156-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9924.t1 ID=Ggra9924.t1|Name=Ggra9924.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=717bp|location=Sequence derived from alignment at tig00000887_pilon:107440..108156- (Gracilaria gracilis GNS1m male)
ATGAGCTTTAAACTTAGCCTCAACCGTGCCGCAGTGCGTCGAAAACGTGG
TCGTCTTCAGGTCTCTTCGACAGCTCAACCGCGTTCTGTCGCACCCGCTT
TTGGACAAGAAGATGATTCAGAGGATTCAGACGAGTCACCTCGAGCCCAA
AAGGTTACTACAATCTCCGCACATGTGGATGAAAAACCCAAAGCGGAAGA
GTCAGAACAGCTCAAAGAAGGGCACGTAGAACATCAGGGTGGGAACAAAT
CCGACGCAAAGATTTCCCAGGTTGCGACCATAGTCGAACGAAGAAAAGAG
GCGAACATATCATCCGCTATCCCTCGAGAGCAGAAAGACGAGGCTCTCTT
TCGATATGAAGTGGCGAATTGTCCTGATGAGGCAGATGTTCATTCATATG
CCCAACGCCCAGTTGACGGATTCGGCGATATGATGCTGAGAAGCATGGGA
TGGAACGGTAAGCAGGCGTTGGAAGAGAAATACGAATCTCCAGTACCAAG
ACCGAATCGACTAGGACTTGGGGCAAAACCTTCGGCCCTCAAGAAGCCAA
CACGACGGAAGAGATTGAGGGAAACCAATAGCAAAACTGATTCCACTCCT
AACGTATACTCTGAGGAAAACTTACAGAACGGTACGGATGAGGGTGTCAC
TGTTAATAGTAAACCATCGCGTTCAGAACTCAACCACAGGGCTATCTCGA
AAAGGCCCAGAGGATAA
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Coding sequence (CDS) from alignment at tig00000887_pilon:107440..108156-

>Ggra9924.t1 ID=Ggra9924.t1|Name=Ggra9924.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=717bp|location=Sequence derived from alignment at tig00000887_pilon:107440..108156- (Gracilaria gracilis GNS1m male)
ATGAGCTTTAAACTTAGCCTCAACCGTGCCGCAGTGCGTCGAAAACGTGG
TCGTCTTCAGGTCTCTTCGACAGCTCAACCGCGTTCTGTCGCACCCGCTT
TTGGACAAGAAGATGATTCAGAGGATTCAGACGAGTCACCTCGAGCCCAA
AAGGTTACTACAATCTCCGCACATGTGGATGAAAAACCCAAAGCGGAAGA
GTCAGAACAGCTCAAAGAAGGGCACGTAGAACATCAGGGTGGGAACAAAT
CCGACGCAAAGATTTCCCAGGTTGCGACCATAGTCGAACGAAGAAAAGAG
GCGAACATATCATCCGCTATCCCTCGAGAGCAGAAAGACGAGGCTCTCTT
TCGATATGAAGTGGCGAATTGTCCTGATGAGGCAGATGTTCATTCATATG
CCCAACGCCCAGTTGACGGATTCGGCGATATGATGCTGAGAAGCATGGGA
TGGAACGGTAAGCAGGCGTTGGAAGAGAAATACGAATCTCCAGTACCAAG
ACCGAATCGACTAGGACTTGGGGCAAAACCTTCGGCCCTCAAGAAGCCAA
CACGACGGAAGAGATTGAGGGAAACCAATAGCAAAACTGATTCCACTCCT
AACGTATACTCTGAGGAAAACTTACAGAACGGTACGGATGAGGGTGTCAC
TGTTAATAGTAAACCATCGCGTTCAGAACTCAACCACAGGGCTATCTCGA
AAAGGCCCAGAGGATAA
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