Ggra9923.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9923.t2
Unique Name	Ggra9923.t2
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	376

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000887_pilon	contig	tig00000887_pilon:105522..106768 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	5786.XP_003283271.1
PFAMs	RHD3
Max annot lvl	554915\|Amoebozoa
Evalue	1.39e-51
EggNOG OGs	KOG2203@1\|root,KOG2203@2759\|Eukaryota,3X874@554915\|Amoebozoa
Description	GTP-binding protein that may be involved in cell development
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9923	Ggra9923	Gracilaria gracilis GNS1m male	gene	tig00000887_pilon 105522..107180 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9923.t2	Ggra9923.t2	Gracilaria gracilis GNS1m male	polypeptide	tig00000887_pilon 105522..106768 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9923.t2.start1	Ggra9923.t2.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000887_pilon 105522..105524 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9923.t2.CDS1	Ggra9923.t2.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000887_pilon 105522..106639 +
Ggra9923.t2.CDS2	Ggra9923.t2.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000887_pilon 106759..106768 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9923.t2.exon1	Ggra9923.t2.exon1	Gracilaria gracilis GNS1m male	exon	tig00000887_pilon 105522..106639 +
Ggra9923.t2.exon2	Ggra9923.t2.exon2	Gracilaria gracilis GNS1m male	exon	tig00000887_pilon 106759..106768 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9923.t2.intron1	Ggra9923.t2.intron1	Gracilaria gracilis GNS1m male	intron	tig00000887_pilon 106640..106758 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9923.t2.stop1	Ggra9923.t2.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000887_pilon 106766..106768 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000887_pilon:105522..106768+
coding sequence from alignment at tig00000887_pilon:105522..106768+

mRNA sequence

>Ggra9923.t2 ID=Ggra9923.t2|Name=Ggra9923.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=376bp
MSACQLIDAEGRFINALPGSEGNTTLHYTTVAVVGCQSGGKSTLLNRAFG
TGFPVLNAPKSGRRRTTLGVWTALRTEPHALVILDVEGTDSRERGEGAKA
FESRTTLFALALADVVVVNMWAHDVGRYSAANYELFETVFAHAVALRRNS
TVMKQRPVRVLIVVRDHDGESNVADIRRVLMGDLHNLWDSLKFGSIQFSS
LFDMDVVALPHMVYAPEEFENGVKKLAESISKGCRRREAAMVPLEGFDAL
AKTVWSAICRSTGGEGADARFTLDLPKHAALAAHFRVGEIVMSIFDGSVG
VKLEDLRAEIESEWRRPVREYGARVEAIIHEAFQTFDHATASYQGGAAVE
AVKTRRTEMGLQLVSRISVLRDREV*

spliced messenger RNA

>Ggra9923.t2 ID=Ggra9923.t2|Name=Ggra9923.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1128bp|location=Sequence derived from alignment at tig00000887_pilon:105522..106768+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGCCTGTCAACTAATTGATGCAGAGGGGCGCTTCATCAATGCTCT
TCCTGGCTCAGAAGGAAACACGACTTTGCACTACACGACGGTGGCGGTTG
TCGGCTGTCAGTCTGGAGGAAAATCCACCCTTCTAAACAGAGCATTTGGT
ACAGGCTTTCCAGTGTTAAATGCTCCTAAAAGTGGAAGACGTCGTACAAC
ATTGGGTGTGTGGACAGCTCTGCGAACCGAACCCCATGCGCTGGTGATTC
TTGATGTGGAAGGGACAGATTCTCGAGAGAGGGGAGAAGGAGCAAAGGCT
TTCGAGAGCAGAACTACTTTATTTGCACTTGCCCTTGCTGATGTGGTTGT
TGTGAACATGTGGGCTCATGATGTCGGACGTTATTCTGCCGCCAATTATG
AGCTTTTTGAGACGGTCTTCGCCCATGCTGTCGCGCTTCGTCGTAACTCG
ACAGTAATGAAACAGCGGCCTGTACGCGTTCTCATTGTCGTTCGGGATCA
TGATGGAGAGTCTAACGTTGCTGATATACGACGTGTTCTCATGGGTGACC
TCCACAACTTGTGGGACTCGCTCAAATTTGGATCCATTCAGTTCTCTTCG
CTCTTTGACATGGATGTTGTCGCTTTGCCACATATGGTTTATGCCCCTGA
AGAATTCGAAAACGGAGTTAAGAAGTTAGCAGAAAGCATATCAAAGGGGT
GCAGACGAAGGGAAGCTGCCATGGTCCCTCTCGAAGGATTCGACGCTTTA
GCAAAGACAGTTTGGTCTGCTATATGTCGAAGCACAGGGGGGGAGGGTGC
CGATGCCCGCTTCACCCTCGACCTGCCAAAGCATGCCGCCTTAGCAGCTC
ACTTTAGAGTTGGGGAAATAGTGATGTCTATATTTGATGGTTCTGTTGGC
GTGAAATTGGAGGACCTTCGCGCCGAGATTGAATCTGAATGGCGTCGACC
CGTTCGGGAGTACGGCGCCCGAGTTGAAGCTATAATCCATGAAGCTTTTC
AGACGTTCGACCACGCTACAGCTTCCTACCAAGGTGGAGCTGCTGTAGAA
GCTGTGAAAACGAGACGAACTGAAATGGGACTTCAGCTGGTATCTCGTAT
TTCGGTTTTGCGAGATCGCGAAGTATAG

protein sequence of Ggra9923.t2

>Ggra9923.t2 ID=Ggra9923.t2|Name=Ggra9923.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=376bp
MSACQLIDAEGRFINALPGSEGNTTLHYTTVAVVGCQSGGKSTLLNRAFG
TGFPVLNAPKSGRRRTTLGVWTALRTEPHALVILDVEGTDSRERGEGAKA
FESRTTLFALALADVVVVNMWAHDVGRYSAANYELFETVFAHAVALRRNS
TVMKQRPVRVLIVVRDHDGESNVADIRRVLMGDLHNLWDSLKFGSIQFSS
LFDMDVVALPHMVYAPEEFENGVKKLAESISKGCRRREAAMVPLEGFDAL
AKTVWSAICRSTGGEGADARFTLDLPKHAALAAHFRVGEIVMSIFDGSVG
VKLEDLRAEIESEWRRPVREYGARVEAIIHEAFQTFDHATASYQGGAAVE
AVKTRRTEMGLQLVSRISVLRDREV*

mRNA from alignment at tig00000887_pilon:105522..106768+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9923.t2 ID=Ggra9923.t2|Name=Ggra9923.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1247bp|location=Sequence derived from alignment at tig00000887_pilon:105522..106768+ (Gracilaria gracilis GNS1m male)
ATGTCCGCCTGTCAACTAATTGATGCAGAGGGGCGCTTCATCAATGCTCT
TCCTGGCTCAGAAGGAAACACGACTTTGCACTACACGACGGTGGCGGTTG
TCGGCTGTCAGTCTGGAGGAAAATCCACCCTTCTAAACAGAGCATTTGGT
ACAGGCTTTCCAGTGTTAAATGCTCCTAAAAGTGGAAGACGTCGTACAAC
ATTGGGTGTGTGGACAGCTCTGCGAACCGAACCCCATGCGCTGGTGATTC
TTGATGTGGAAGGGACAGATTCTCGAGAGAGGGGAGAAGGAGCAAAGGCT
TTCGAGAGCAGAACTACTTTATTTGCACTTGCCCTTGCTGATGTGGTTGT
TGTGAACATGTGGGCTCATGATGTCGGACGTTATTCTGCCGCCAATTATG
AGCTTTTTGAGACGGTCTTCGCCCATGCTGTCGCGCTTCGTCGTAACTCG
ACAGTAATGAAACAGCGGCCTGTACGCGTTCTCATTGTCGTTCGGGATCA
TGATGGAGAGTCTAACGTTGCTGATATACGACGTGTTCTCATGGGTGACC
TCCACAACTTGTGGGACTCGCTCAAATTTGGATCCATTCAGTTCTCTTCG
CTCTTTGACATGGATGTTGTCGCTTTGCCACATATGGTTTATGCCCCTGA
AGAATTCGAAAACGGAGTTAAGAAGTTAGCAGAAAGCATATCAAAGGGGT
GCAGACGAAGGGAAGCTGCCATGGTCCCTCTCGAAGGATTCGACGCTTTA
GCAAAGACAGTTTGGTCTGCTATATGTCGAAGCACAGGGGGGGAGGGTGC
CGATGCCCGCTTCACCCTCGACCTGCCAAAGCATGCCGCCTTAGCAGCTC
ACTTTAGAGTTGGGGAAATAGTGATGTCTATATTTGATGGTTCTGTTGGC
GTGAAATTGGAGGACCTTCGCGCCGAGATTGAATCTGAATGGCGTCGACC
CGTTCGGGAGTACGGCGCCCGAGTTGAAGCTATAATCCATGAAGCTTTTC
AGACGTTCGACCACGCTACAGCTTCCTACCAAGGTGGAGCTGCTGTAGAA
GCTGTGAAAACGAGACGAACTGAAATGGGACTTCAGCTGGTATCTCGTAT
TTCGGTTTTGCGAGATCGGTACCTCTCTGTATGTCGGGACTTCTGTATGA
ACGGGTTTGAAGATGAATTCAGACCCATGTTGGGAGGAACAAACGGGTTT
GAACGAAATGCGAAGAGGCTCGCAAACACTTTTATAGCGAAGTATAG

Coding sequence (CDS) from alignment at tig00000887_pilon:105522..106768+

>Ggra9923.t2 ID=Ggra9923.t2|Name=Ggra9923.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1128bp|location=Sequence derived from alignment at tig00000887_pilon:105522..106768+ (Gracilaria gracilis GNS1m male)
ATGTCCGCCTGTCAACTAATTGATGCAGAGGGGCGCTTCATCAATGCTCT
TCCTGGCTCAGAAGGAAACACGACTTTGCACTACACGACGGTGGCGGTTG
TCGGCTGTCAGTCTGGAGGAAAATCCACCCTTCTAAACAGAGCATTTGGT
ACAGGCTTTCCAGTGTTAAATGCTCCTAAAAGTGGAAGACGTCGTACAAC
ATTGGGTGTGTGGACAGCTCTGCGAACCGAACCCCATGCGCTGGTGATTC
TTGATGTGGAAGGGACAGATTCTCGAGAGAGGGGAGAAGGAGCAAAGGCT
TTCGAGAGCAGAACTACTTTATTTGCACTTGCCCTTGCTGATGTGGTTGT
TGTGAACATGTGGGCTCATGATGTCGGACGTTATTCTGCCGCCAATTATG
AGCTTTTTGAGACGGTCTTCGCCCATGCTGTCGCGCTTCGTCGTAACTCG
ACAGTAATGAAACAGCGGCCTGTACGCGTTCTCATTGTCGTTCGGGATCA
TGATGGAGAGTCTAACGTTGCTGATATACGACGTGTTCTCATGGGTGACC
TCCACAACTTGTGGGACTCGCTCAAATTTGGATCCATTCAGTTCTCTTCG
CTCTTTGACATGGATGTTGTCGCTTTGCCACATATGGTTTATGCCCCTGA
AGAATTCGAAAACGGAGTTAAGAAGTTAGCAGAAAGCATATCAAAGGGGT
GCAGACGAAGGGAAGCTGCCATGGTCCCTCTCGAAGGATTCGACGCTTTA
GCAAAGACAGTTTGGTCTGCTATATGTCGAAGCACAGGGGGGGAGGGTGC
CGATGCCCGCTTCACCCTCGACCTGCCAAAGCATGCCGCCTTAGCAGCTC
ACTTTAGAGTTGGGGAAATAGTGATGTCTATATTTGATGGTTCTGTTGGC
GTGAAATTGGAGGACCTTCGCGCCGAGATTGAATCTGAATGGCGTCGACC
CGTTCGGGAGTACGGCGCCCGAGTTGAAGCTATAATCCATGAAGCTTTTC
AGACGTTCGACCACGCTACAGCTTCCTACCAAGGTGGAGCTGCTGTAGAA
GCTGTGAAAACGAGACGAACTGAAATGGGACTTCAGCTGGTATCTCGTAT
TTCGGTTTTGCGAGATCGCGAAGTATAG