Ggra9923.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9923.t2
Unique NameGgra9923.t2
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length376
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000887_piloncontigtig00000887_pilon:105522..106768 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5786.XP_003283271.1
PFAMsRHD3
Max annot lvl554915|Amoebozoa
Evalue1.39e-51
EggNOG OGsKOG2203@1|root,KOG2203@2759|Eukaryota,3X874@554915|Amoebozoa
DescriptionGTP-binding protein that may be involved in cell development
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9923Ggra9923Gracilaria gracilis GNS1m malegenetig00000887_pilon 105522..107180 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9923.t2Ggra9923.t2Gracilaria gracilis GNS1m malepolypeptidetig00000887_pilon 105522..106768 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9923.t2.start1Ggra9923.t2.start1Gracilaria gracilis GNS1m malestart_codontig00000887_pilon 105522..105524 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9923.t2.CDS1Ggra9923.t2.CDS1Gracilaria gracilis GNS1m maleCDStig00000887_pilon 105522..106639 +
Ggra9923.t2.CDS2Ggra9923.t2.CDS2Gracilaria gracilis GNS1m maleCDStig00000887_pilon 106759..106768 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9923.t2.exon1Ggra9923.t2.exon1Gracilaria gracilis GNS1m maleexontig00000887_pilon 105522..106639 +
Ggra9923.t2.exon2Ggra9923.t2.exon2Gracilaria gracilis GNS1m maleexontig00000887_pilon 106759..106768 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9923.t2.intron1Ggra9923.t2.intron1Gracilaria gracilis GNS1m maleintrontig00000887_pilon 106640..106758 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9923.t2.stop1Ggra9923.t2.stop1Gracilaria gracilis GNS1m malestop_codontig00000887_pilon 106766..106768 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9923.t2 ID=Ggra9923.t2|Name=Ggra9923.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=376bp
MSACQLIDAEGRFINALPGSEGNTTLHYTTVAVVGCQSGGKSTLLNRAFG
TGFPVLNAPKSGRRRTTLGVWTALRTEPHALVILDVEGTDSRERGEGAKA
FESRTTLFALALADVVVVNMWAHDVGRYSAANYELFETVFAHAVALRRNS
TVMKQRPVRVLIVVRDHDGESNVADIRRVLMGDLHNLWDSLKFGSIQFSS
LFDMDVVALPHMVYAPEEFENGVKKLAESISKGCRRREAAMVPLEGFDAL
AKTVWSAICRSTGGEGADARFTLDLPKHAALAAHFRVGEIVMSIFDGSVG
VKLEDLRAEIESEWRRPVREYGARVEAIIHEAFQTFDHATASYQGGAAVE
AVKTRRTEMGLQLVSRISVLRDREV*
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spliced messenger RNA

>Ggra9923.t2 ID=Ggra9923.t2|Name=Ggra9923.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1128bp|location=Sequence derived from alignment at tig00000887_pilon:105522..106768+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGCCTGTCAACTAATTGATGCAGAGGGGCGCTTCATCAATGCTCT
TCCTGGCTCAGAAGGAAACACGACTTTGCACTACACGACGGTGGCGGTTG
TCGGCTGTCAGTCTGGAGGAAAATCCACCCTTCTAAACAGAGCATTTGGT
ACAGGCTTTCCAGTGTTAAATGCTCCTAAAAGTGGAAGACGTCGTACAAC
ATTGGGTGTGTGGACAGCTCTGCGAACCGAACCCCATGCGCTGGTGATTC
TTGATGTGGAAGGGACAGATTCTCGAGAGAGGGGAGAAGGAGCAAAGGCT
TTCGAGAGCAGAACTACTTTATTTGCACTTGCCCTTGCTGATGTGGTTGT
TGTGAACATGTGGGCTCATGATGTCGGACGTTATTCTGCCGCCAATTATG
AGCTTTTTGAGACGGTCTTCGCCCATGCTGTCGCGCTTCGTCGTAACTCG
ACAGTAATGAAACAGCGGCCTGTACGCGTTCTCATTGTCGTTCGGGATCA
TGATGGAGAGTCTAACGTTGCTGATATACGACGTGTTCTCATGGGTGACC
TCCACAACTTGTGGGACTCGCTCAAATTTGGATCCATTCAGTTCTCTTCG
CTCTTTGACATGGATGTTGTCGCTTTGCCACATATGGTTTATGCCCCTGA
AGAATTCGAAAACGGAGTTAAGAAGTTAGCAGAAAGCATATCAAAGGGGT
GCAGACGAAGGGAAGCTGCCATGGTCCCTCTCGAAGGATTCGACGCTTTA
GCAAAGACAGTTTGGTCTGCTATATGTCGAAGCACAGGGGGGGAGGGTGC
CGATGCCCGCTTCACCCTCGACCTGCCAAAGCATGCCGCCTTAGCAGCTC
ACTTTAGAGTTGGGGAAATAGTGATGTCTATATTTGATGGTTCTGTTGGC
GTGAAATTGGAGGACCTTCGCGCCGAGATTGAATCTGAATGGCGTCGACC
CGTTCGGGAGTACGGCGCCCGAGTTGAAGCTATAATCCATGAAGCTTTTC
AGACGTTCGACCACGCTACAGCTTCCTACCAAGGTGGAGCTGCTGTAGAA
GCTGTGAAAACGAGACGAACTGAAATGGGACTTCAGCTGGTATCTCGTAT
TTCGGTTTTGCGAGATCGCGAAGTATAG
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protein sequence of Ggra9923.t2

>Ggra9923.t2 ID=Ggra9923.t2|Name=Ggra9923.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=376bp
MSACQLIDAEGRFINALPGSEGNTTLHYTTVAVVGCQSGGKSTLLNRAFG
TGFPVLNAPKSGRRRTTLGVWTALRTEPHALVILDVEGTDSRERGEGAKA
FESRTTLFALALADVVVVNMWAHDVGRYSAANYELFETVFAHAVALRRNS
TVMKQRPVRVLIVVRDHDGESNVADIRRVLMGDLHNLWDSLKFGSIQFSS
LFDMDVVALPHMVYAPEEFENGVKKLAESISKGCRRREAAMVPLEGFDAL
AKTVWSAICRSTGGEGADARFTLDLPKHAALAAHFRVGEIVMSIFDGSVG
VKLEDLRAEIESEWRRPVREYGARVEAIIHEAFQTFDHATASYQGGAAVE
AVKTRRTEMGLQLVSRISVLRDREV*
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mRNA from alignment at tig00000887_pilon:105522..106768+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9923.t2 ID=Ggra9923.t2|Name=Ggra9923.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1247bp|location=Sequence derived from alignment at tig00000887_pilon:105522..106768+ (Gracilaria gracilis GNS1m male)
ATGTCCGCCTGTCAACTAATTGATGCAGAGGGGCGCTTCATCAATGCTCT
TCCTGGCTCAGAAGGAAACACGACTTTGCACTACACGACGGTGGCGGTTG
TCGGCTGTCAGTCTGGAGGAAAATCCACCCTTCTAAACAGAGCATTTGGT
ACAGGCTTTCCAGTGTTAAATGCTCCTAAAAGTGGAAGACGTCGTACAAC
ATTGGGTGTGTGGACAGCTCTGCGAACCGAACCCCATGCGCTGGTGATTC
TTGATGTGGAAGGGACAGATTCTCGAGAGAGGGGAGAAGGAGCAAAGGCT
TTCGAGAGCAGAACTACTTTATTTGCACTTGCCCTTGCTGATGTGGTTGT
TGTGAACATGTGGGCTCATGATGTCGGACGTTATTCTGCCGCCAATTATG
AGCTTTTTGAGACGGTCTTCGCCCATGCTGTCGCGCTTCGTCGTAACTCG
ACAGTAATGAAACAGCGGCCTGTACGCGTTCTCATTGTCGTTCGGGATCA
TGATGGAGAGTCTAACGTTGCTGATATACGACGTGTTCTCATGGGTGACC
TCCACAACTTGTGGGACTCGCTCAAATTTGGATCCATTCAGTTCTCTTCG
CTCTTTGACATGGATGTTGTCGCTTTGCCACATATGGTTTATGCCCCTGA
AGAATTCGAAAACGGAGTTAAGAAGTTAGCAGAAAGCATATCAAAGGGGT
GCAGACGAAGGGAAGCTGCCATGGTCCCTCTCGAAGGATTCGACGCTTTA
GCAAAGACAGTTTGGTCTGCTATATGTCGAAGCACAGGGGGGGAGGGTGC
CGATGCCCGCTTCACCCTCGACCTGCCAAAGCATGCCGCCTTAGCAGCTC
ACTTTAGAGTTGGGGAAATAGTGATGTCTATATTTGATGGTTCTGTTGGC
GTGAAATTGGAGGACCTTCGCGCCGAGATTGAATCTGAATGGCGTCGACC
CGTTCGGGAGTACGGCGCCCGAGTTGAAGCTATAATCCATGAAGCTTTTC
AGACGTTCGACCACGCTACAGCTTCCTACCAAGGTGGAGCTGCTGTAGAA
GCTGTGAAAACGAGACGAACTGAAATGGGACTTCAGCTGGTATCTCGTAT
TTCGGTTTTGCGAGATCGGTACCTCTCTGTATGTCGGGACTTCTGTATGA
ACGGGTTTGAAGATGAATTCAGACCCATGTTGGGAGGAACAAACGGGTTT
GAACGAAATGCGAAGAGGCTCGCAAACACTTTTATAGCGAAGTATAG
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Coding sequence (CDS) from alignment at tig00000887_pilon:105522..106768+

>Ggra9923.t2 ID=Ggra9923.t2|Name=Ggra9923.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1128bp|location=Sequence derived from alignment at tig00000887_pilon:105522..106768+ (Gracilaria gracilis GNS1m male)
ATGTCCGCCTGTCAACTAATTGATGCAGAGGGGCGCTTCATCAATGCTCT
TCCTGGCTCAGAAGGAAACACGACTTTGCACTACACGACGGTGGCGGTTG
TCGGCTGTCAGTCTGGAGGAAAATCCACCCTTCTAAACAGAGCATTTGGT
ACAGGCTTTCCAGTGTTAAATGCTCCTAAAAGTGGAAGACGTCGTACAAC
ATTGGGTGTGTGGACAGCTCTGCGAACCGAACCCCATGCGCTGGTGATTC
TTGATGTGGAAGGGACAGATTCTCGAGAGAGGGGAGAAGGAGCAAAGGCT
TTCGAGAGCAGAACTACTTTATTTGCACTTGCCCTTGCTGATGTGGTTGT
TGTGAACATGTGGGCTCATGATGTCGGACGTTATTCTGCCGCCAATTATG
AGCTTTTTGAGACGGTCTTCGCCCATGCTGTCGCGCTTCGTCGTAACTCG
ACAGTAATGAAACAGCGGCCTGTACGCGTTCTCATTGTCGTTCGGGATCA
TGATGGAGAGTCTAACGTTGCTGATATACGACGTGTTCTCATGGGTGACC
TCCACAACTTGTGGGACTCGCTCAAATTTGGATCCATTCAGTTCTCTTCG
CTCTTTGACATGGATGTTGTCGCTTTGCCACATATGGTTTATGCCCCTGA
AGAATTCGAAAACGGAGTTAAGAAGTTAGCAGAAAGCATATCAAAGGGGT
GCAGACGAAGGGAAGCTGCCATGGTCCCTCTCGAAGGATTCGACGCTTTA
GCAAAGACAGTTTGGTCTGCTATATGTCGAAGCACAGGGGGGGAGGGTGC
CGATGCCCGCTTCACCCTCGACCTGCCAAAGCATGCCGCCTTAGCAGCTC
ACTTTAGAGTTGGGGAAATAGTGATGTCTATATTTGATGGTTCTGTTGGC
GTGAAATTGGAGGACCTTCGCGCCGAGATTGAATCTGAATGGCGTCGACC
CGTTCGGGAGTACGGCGCCCGAGTTGAAGCTATAATCCATGAAGCTTTTC
AGACGTTCGACCACGCTACAGCTTCCTACCAAGGTGGAGCTGCTGTAGAA
GCTGTGAAAACGAGACGAACTGAAATGGGACTTCAGCTGGTATCTCGTAT
TTCGGTTTTGCGAGATCGCGAAGTATAG
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