Ggra9910.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9910.t1
Unique NameGgra9910.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length499
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000887_piloncontigtig00000887_pilon:69288..70784 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMJ315CT
Preferred nameFTR1
PFAMsFTR1
Max annot lvl2759|Eukaryota
KEGG koko:K07243
KEGG TC2.A.108.1,2.A.108.2
GOsGO:0000041,GO:0003674,GO:0005215,GO:0005381,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006826,GO:0006873,GO:0006875,GO:0006879,GO:0006950,GO:0007154,GO:0008150,GO:0008324,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0010106,GO:0015075,GO:0015093,GO:0015318,GO:0015684,GO:0016020,GO:0016021,GO:0019725,GO:0022857,GO:0022890,GO:0030001,GO:0030003,GO:0031224,GO:0031226,GO:0031667,GO:0031668,GO:0031669,GO:0032991,GO:0033212,GO:0033215,GO:0033554,GO:0033573,GO:0034220,GO:0034755,GO:0042592,GO:0042594,GO:0044425,GO:0044459,GO:0044464,GO:0046873,GO:0046915,GO:0046916,GO:0048878,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0055085,GO:0061840,GO:0065007,GO:0065008,GO:0070627,GO:0070838,GO:0071496,GO:0071944,GO:0072509,GO:0072511,GO:0097286,GO:0098655,GO:0098656,GO:0098657,GO:0098659,GO:0098660,GO:0098662,GO:0098707,GO:0098711,GO:0098739,GO:0098771,GO:0098796,GO:0098797,GO:0099587,GO:1901684,GO:1902494,GO:1902495,GO:1903874,GO:1905862,GO:1990204,GO:1990351
Evalue1.12e-81
EggNOG OGsCOG0672@1|root,2QQWE@2759|Eukaryota
Descriptionhigh-affinity ferrous iron transmembrane transporter activity
COG categoryP
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9910Ggra9910Gracilaria gracilis GNS1m malegenetig00000887_pilon 69288..70784 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9910.t1.start1Ggra9910.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000887_pilon 69288..69290 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9910.t1.CDS1Ggra9910.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000887_pilon 69288..70784 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9910.t1.exon1Ggra9910.t1.exon1Gracilaria gracilis GNS1m maleexontig00000887_pilon 69288..70784 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9910.t1.stop1Ggra9910.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000887_pilon 70782..70784 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9910.t1Ggra9910.t1Gracilaria gracilis GNS1m malepolypeptidetig00000887_pilon 69288..70784 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9910.t1 ID=Ggra9910.t1|Name=Ggra9910.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=499bp
MSVFSIPAFFIVLREVLEACLVVGIVLAYINKIGATQYRRYVWWGTIGGI
AISVIVGLAFGIVVWTNGDQLFKDDAEKIFEGITFLVAASLLTWMIIWMM
ILGKNLRTKLERDVDQIIDDDDKSPLRRKIAIFSMVFVQVLREGIETVIF
LIGTANADENGGWRAIPLPGILAIIVGVGASFLVFRGLLQLDILKFFLVS
SFVLMAFAAGLVSHAFHELQEVDWFGPWNPSEERDWYNATMWSTKGCCHD
KENEFFAMLRALFGYQDTPTFVEWATYFAYWLIIVVVFICINWELIRASR
SKMLSLSKQLSVWALLFTFVGFVFSLMNITWIGVTTMTLGFLLSLVTVAT
AFESTMRLLKPLRRSRKALMFGSGVGWAVLMSFYFVLHLVQMSCEGLEDR
CNLEMFFFFGLIFNPDFNIQGRQEKSWPAIAVLSVSVVLTVYFFSALAFT
AIMSSFNVDSDGYYVGDDGIAAKPVPMEEKLVDEEVNIGSPEGVPAAV*
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spliced messenger RNA

>Ggra9910.t1 ID=Ggra9910.t1|Name=Ggra9910.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1497bp|location=Sequence derived from alignment at tig00000887_pilon:69288..70784+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGTTTTCTCGATCCCGGCGTTCTTCATCGTCCTGCGAGAAGTGTT
GGAGGCATGTCTCGTCGTCGGCATAGTGCTGGCCTACATCAATAAGATCG
GTGCCACTCAGTATCGTCGCTACGTTTGGTGGGGTACCATCGGTGGCATT
GCCATTTCCGTTATTGTCGGCCTTGCGTTCGGCATCGTTGTGTGGACGAA
TGGCGATCAGCTGTTCAAGGATGATGCCGAGAAAATCTTCGAAGGCATTA
CCTTCCTTGTCGCCGCGTCGTTGCTCACGTGGATGATCATCTGGATGATG
ATATTGGGTAAGAACCTGCGTACCAAGCTCGAGCGCGACGTTGACCAGAT
TATCGATGACGATGACAAGAGTCCACTGCGACGCAAGATTGCCATCTTCT
CCATGGTGTTCGTACAGGTGCTGAGGGAGGGCATTGAGACCGTTATTTTC
CTCATCGGCACTGCCAATGCGGACGAAAACGGCGGCTGGCGCGCTATCCC
TCTGCCTGGAATTCTGGCTATCATTGTTGGTGTGGGTGCCTCCTTCCTTG
TGTTCAGAGGCTTGCTGCAGCTCGATATTCTCAAGTTCTTCCTCGTGTCC
AGCTTTGTTCTGATGGCGTTTGCTGCGGGATTGGTCAGCCATGCGTTCCA
TGAACTGCAAGAGGTCGACTGGTTTGGCCCTTGGAATCCTTCTGAGGAAC
GTGACTGGTATAATGCCACCATGTGGTCTACAAAGGGTTGCTGTCACGAC
AAGGAGAATGAATTCTTTGCCATGTTGCGCGCACTGTTTGGATACCAGGA
TACGCCTACGTTTGTCGAATGGGCTACCTACTTTGCCTACTGGCTCATCA
TTGTCGTCGTGTTCATCTGCATCAACTGGGAGCTGATTCGTGCATCGCGT
TCCAAAATGTTGTCCCTTTCGAAGCAACTCTCGGTTTGGGCATTGTTGTT
CACGTTTGTCGGATTTGTGTTCTCGCTTATGAACATCACGTGGATTGGTG
TTACCACGATGACGCTCGGCTTCTTGCTGTCCCTTGTGACTGTCGCCACT
GCGTTTGAAAGCACCATGCGTTTGTTGAAGCCGTTGAGAAGATCGAGGAA
GGCATTGATGTTTGGAAGTGGCGTGGGATGGGCCGTGCTCATGTCGTTTT
ATTTCGTGCTTCATTTGGTTCAGATGAGTTGCGAAGGCTTGGAGGATCGA
TGCAACCTTGAAATGTTCTTCTTCTTTGGGCTCATCTTCAACCCCGACTT
CAATATCCAAGGACGGCAGGAGAAGTCATGGCCGGCTATCGCAGTCCTTT
CCGTATCCGTTGTGCTGACAGTGTACTTCTTCAGCGCACTTGCCTTCACT
GCTATTATGAGTTCTTTCAATGTTGACTCAGACGGTTACTACGTTGGCGA
CGACGGTATTGCCGCGAAACCTGTTCCTATGGAAGAGAAGCTCGTGGATG
AAGAGGTCAATATTGGCTCCCCAGAAGGAGTACCTGCTGCGGTTTGA
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protein sequence of Ggra9910.t1

>Ggra9910.t1 ID=Ggra9910.t1|Name=Ggra9910.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=499bp
MSVFSIPAFFIVLREVLEACLVVGIVLAYINKIGATQYRRYVWWGTIGGI
AISVIVGLAFGIVVWTNGDQLFKDDAEKIFEGITFLVAASLLTWMIIWMM
ILGKNLRTKLERDVDQIIDDDDKSPLRRKIAIFSMVFVQVLREGIETVIF
LIGTANADENGGWRAIPLPGILAIIVGVGASFLVFRGLLQLDILKFFLVS
SFVLMAFAAGLVSHAFHELQEVDWFGPWNPSEERDWYNATMWSTKGCCHD
KENEFFAMLRALFGYQDTPTFVEWATYFAYWLIIVVVFICINWELIRASR
SKMLSLSKQLSVWALLFTFVGFVFSLMNITWIGVTTMTLGFLLSLVTVAT
AFESTMRLLKPLRRSRKALMFGSGVGWAVLMSFYFVLHLVQMSCEGLEDR
CNLEMFFFFGLIFNPDFNIQGRQEKSWPAIAVLSVSVVLTVYFFSALAFT
AIMSSFNVDSDGYYVGDDGIAAKPVPMEEKLVDEEVNIGSPEGVPAAV*
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mRNA from alignment at tig00000887_pilon:69288..70784+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9910.t1 ID=Ggra9910.t1|Name=Ggra9910.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1497bp|location=Sequence derived from alignment at tig00000887_pilon:69288..70784+ (Gracilaria gracilis GNS1m male)
ATGTCCGTTTTCTCGATCCCGGCGTTCTTCATCGTCCTGCGAGAAGTGTT
GGAGGCATGTCTCGTCGTCGGCATAGTGCTGGCCTACATCAATAAGATCG
GTGCCACTCAGTATCGTCGCTACGTTTGGTGGGGTACCATCGGTGGCATT
GCCATTTCCGTTATTGTCGGCCTTGCGTTCGGCATCGTTGTGTGGACGAA
TGGCGATCAGCTGTTCAAGGATGATGCCGAGAAAATCTTCGAAGGCATTA
CCTTCCTTGTCGCCGCGTCGTTGCTCACGTGGATGATCATCTGGATGATG
ATATTGGGTAAGAACCTGCGTACCAAGCTCGAGCGCGACGTTGACCAGAT
TATCGATGACGATGACAAGAGTCCACTGCGACGCAAGATTGCCATCTTCT
CCATGGTGTTCGTACAGGTGCTGAGGGAGGGCATTGAGACCGTTATTTTC
CTCATCGGCACTGCCAATGCGGACGAAAACGGCGGCTGGCGCGCTATCCC
TCTGCCTGGAATTCTGGCTATCATTGTTGGTGTGGGTGCCTCCTTCCTTG
TGTTCAGAGGCTTGCTGCAGCTCGATATTCTCAAGTTCTTCCTCGTGTCC
AGCTTTGTTCTGATGGCGTTTGCTGCGGGATTGGTCAGCCATGCGTTCCA
TGAACTGCAAGAGGTCGACTGGTTTGGCCCTTGGAATCCTTCTGAGGAAC
GTGACTGGTATAATGCCACCATGTGGTCTACAAAGGGTTGCTGTCACGAC
AAGGAGAATGAATTCTTTGCCATGTTGCGCGCACTGTTTGGATACCAGGA
TACGCCTACGTTTGTCGAATGGGCTACCTACTTTGCCTACTGGCTCATCA
TTGTCGTCGTGTTCATCTGCATCAACTGGGAGCTGATTCGTGCATCGCGT
TCCAAAATGTTGTCCCTTTCGAAGCAACTCTCGGTTTGGGCATTGTTGTT
CACGTTTGTCGGATTTGTGTTCTCGCTTATGAACATCACGTGGATTGGTG
TTACCACGATGACGCTCGGCTTCTTGCTGTCCCTTGTGACTGTCGCCACT
GCGTTTGAAAGCACCATGCGTTTGTTGAAGCCGTTGAGAAGATCGAGGAA
GGCATTGATGTTTGGAAGTGGCGTGGGATGGGCCGTGCTCATGTCGTTTT
ATTTCGTGCTTCATTTGGTTCAGATGAGTTGCGAAGGCTTGGAGGATCGA
TGCAACCTTGAAATGTTCTTCTTCTTTGGGCTCATCTTCAACCCCGACTT
CAATATCCAAGGACGGCAGGAGAAGTCATGGCCGGCTATCGCAGTCCTTT
CCGTATCCGTTGTGCTGACAGTGTACTTCTTCAGCGCACTTGCCTTCACT
GCTATTATGAGTTCTTTCAATGTTGACTCAGACGGTTACTACGTTGGCGA
CGACGGTATTGCCGCGAAACCTGTTCCTATGGAAGAGAAGCTCGTGGATG
AAGAGGTCAATATTGGCTCCCCAGAAGGAGTACCTGCTGCGGTTTGA
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Coding sequence (CDS) from alignment at tig00000887_pilon:69288..70784+

>Ggra9910.t1 ID=Ggra9910.t1|Name=Ggra9910.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1497bp|location=Sequence derived from alignment at tig00000887_pilon:69288..70784+ (Gracilaria gracilis GNS1m male)
ATGTCCGTTTTCTCGATCCCGGCGTTCTTCATCGTCCTGCGAGAAGTGTT
GGAGGCATGTCTCGTCGTCGGCATAGTGCTGGCCTACATCAATAAGATCG
GTGCCACTCAGTATCGTCGCTACGTTTGGTGGGGTACCATCGGTGGCATT
GCCATTTCCGTTATTGTCGGCCTTGCGTTCGGCATCGTTGTGTGGACGAA
TGGCGATCAGCTGTTCAAGGATGATGCCGAGAAAATCTTCGAAGGCATTA
CCTTCCTTGTCGCCGCGTCGTTGCTCACGTGGATGATCATCTGGATGATG
ATATTGGGTAAGAACCTGCGTACCAAGCTCGAGCGCGACGTTGACCAGAT
TATCGATGACGATGACAAGAGTCCACTGCGACGCAAGATTGCCATCTTCT
CCATGGTGTTCGTACAGGTGCTGAGGGAGGGCATTGAGACCGTTATTTTC
CTCATCGGCACTGCCAATGCGGACGAAAACGGCGGCTGGCGCGCTATCCC
TCTGCCTGGAATTCTGGCTATCATTGTTGGTGTGGGTGCCTCCTTCCTTG
TGTTCAGAGGCTTGCTGCAGCTCGATATTCTCAAGTTCTTCCTCGTGTCC
AGCTTTGTTCTGATGGCGTTTGCTGCGGGATTGGTCAGCCATGCGTTCCA
TGAACTGCAAGAGGTCGACTGGTTTGGCCCTTGGAATCCTTCTGAGGAAC
GTGACTGGTATAATGCCACCATGTGGTCTACAAAGGGTTGCTGTCACGAC
AAGGAGAATGAATTCTTTGCCATGTTGCGCGCACTGTTTGGATACCAGGA
TACGCCTACGTTTGTCGAATGGGCTACCTACTTTGCCTACTGGCTCATCA
TTGTCGTCGTGTTCATCTGCATCAACTGGGAGCTGATTCGTGCATCGCGT
TCCAAAATGTTGTCCCTTTCGAAGCAACTCTCGGTTTGGGCATTGTTGTT
CACGTTTGTCGGATTTGTGTTCTCGCTTATGAACATCACGTGGATTGGTG
TTACCACGATGACGCTCGGCTTCTTGCTGTCCCTTGTGACTGTCGCCACT
GCGTTTGAAAGCACCATGCGTTTGTTGAAGCCGTTGAGAAGATCGAGGAA
GGCATTGATGTTTGGAAGTGGCGTGGGATGGGCCGTGCTCATGTCGTTTT
ATTTCGTGCTTCATTTGGTTCAGATGAGTTGCGAAGGCTTGGAGGATCGA
TGCAACCTTGAAATGTTCTTCTTCTTTGGGCTCATCTTCAACCCCGACTT
CAATATCCAAGGACGGCAGGAGAAGTCATGGCCGGCTATCGCAGTCCTTT
CCGTATCCGTTGTGCTGACAGTGTACTTCTTCAGCGCACTTGCCTTCACT
GCTATTATGAGTTCTTTCAATGTTGACTCAGACGGTTACTACGTTGGCGA
CGACGGTATTGCCGCGAAACCTGTTCCTATGGAAGAGAAGCTCGTGGATG
AAGAGGTCAATATTGGCTCCCCAGAAGGAGTACCTGCTGCGGTTTGA
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