Ggra991.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra991.t1
Unique NameGgra991.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length287
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000027_piloncontigtig00000027_pilon:85121..85981 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1265502.KB905940_gene2974
Preferred namearp3
PFAMsAnk_2,Ank_3,Ank_4,Ank_5
Max annot lvl28216|Betaproteobacteria
KEGG koko:K06867
Evalue0.000865
EggNOG OGsCOG0666@1|root,COG0666@2|Bacteria,1N952@1224|Proteobacteria,2VPIV@28216|Betaproteobacteria,4ADCG@80864|Comamonadaceae
DescriptionPFAM Ankyrin
COG categoryS
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra991Ggra991Gracilaria gracilis GNS1m malegenetig00000027_pilon 85121..85981 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra991.t1.stop1Ggra991.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000027_pilon 85121..85123 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra991.t1.CDS1Ggra991.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000027_pilon 85121..85981 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra991.t1.exon1Ggra991.t1.exon1Gracilaria gracilis GNS1m maleexontig00000027_pilon 85121..85981 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra991.t1.start1Ggra991.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000027_pilon 85979..85981 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra991.t1Ggra991.t1Gracilaria gracilis GNS1m malepolypeptidetig00000027_pilon 85121..85981 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra991.t1 ID=Ggra991.t1|Name=Ggra991.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=287bp
MQDTLVGLCAAGLWDEADALIDQLIALSEEELAEALQETHGTPKWTSLHY
AAICKPTPSTLEKLVDSGADLEARGSSGSTPLHLAAWNGCDEAAHFLVAN
GASIEASSKNGRTPLMFAARRGDSGMMNSLIQLGADVRARDQRGRSALHF
AAQSGQADAMRKLFQEGAIEEADANGVTPGDLAEGEAKDVLDDDLRSDWS
MRRALSGVLNIQSWRDRFAGLARHVGGNGSVPPSPPPSPESSPRSSNPSL
SISNRPVNRGELYAAVGAGVLISLLLPIARGGGSQS*
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spliced messenger RNA

>Ggra991.t1 ID=Ggra991.t1|Name=Ggra991.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=861bp|location=Sequence derived from alignment at tig00000027_pilon:85121..85981- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAGATACCCTGGTAGGTCTCTGCGCAGCAGGACTGTGGGATGAGGC
TGATGCACTGATTGACCAACTGATTGCACTCAGTGAAGAGGAACTAGCCG
AAGCCCTCCAGGAGACACATGGTACTCCCAAGTGGACAAGTCTGCACTAT
GCGGCGATTTGCAAGCCGACCCCGAGCACTTTGGAGAAACTTGTGGATAG
CGGCGCTGATTTGGAAGCGCGCGGCAGTTCTGGAAGTACACCTTTGCATT
TGGCGGCGTGGAACGGTTGCGACGAAGCTGCGCATTTCCTCGTGGCGAAT
GGTGCAAGCATTGAGGCATCAAGCAAGAACGGGCGCACCCCGCTCATGTT
TGCCGCCAGGCGAGGGGATTCAGGCATGATGAACTCGCTAATTCAACTTG
GTGCCGACGTGAGAGCTCGTGACCAGCGCGGACGGTCGGCACTGCACTTT
GCTGCCCAATCAGGACAGGCTGATGCGATGCGTAAGCTCTTCCAGGAGGG
CGCGATTGAGGAAGCCGATGCAAATGGAGTGACTCCCGGCGACCTCGCCG
AGGGAGAAGCAAAGGACGTCCTTGACGACGACCTGCGTTCAGACTGGAGC
ATGCGAAGGGCTCTTTCTGGCGTGTTGAACATTCAGTCCTGGAGAGATCG
TTTTGCTGGGTTAGCTCGACACGTTGGCGGCAATGGATCGGTTCCGCCAA
GCCCACCGCCAAGCCCAGAATCAAGCCCGCGTTCGTCCAACCCTTCGTTG
TCTATTAGCAATCGACCCGTGAACCGCGGAGAACTTTATGCGGCTGTCGG
TGCAGGAGTGTTGATTAGCCTTCTGCTGCCGATAGCGAGAGGCGGTGGTA
GTCAGAGTTAA
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protein sequence of Ggra991.t1

>Ggra991.t1 ID=Ggra991.t1|Name=Ggra991.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=287bp
MQDTLVGLCAAGLWDEADALIDQLIALSEEELAEALQETHGTPKWTSLHY
AAICKPTPSTLEKLVDSGADLEARGSSGSTPLHLAAWNGCDEAAHFLVAN
GASIEASSKNGRTPLMFAARRGDSGMMNSLIQLGADVRARDQRGRSALHF
AAQSGQADAMRKLFQEGAIEEADANGVTPGDLAEGEAKDVLDDDLRSDWS
MRRALSGVLNIQSWRDRFAGLARHVGGNGSVPPSPPPSPESSPRSSNPSL
SISNRPVNRGELYAAVGAGVLISLLLPIARGGGSQS*
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mRNA from alignment at tig00000027_pilon:85121..85981-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra991.t1 ID=Ggra991.t1|Name=Ggra991.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=861bp|location=Sequence derived from alignment at tig00000027_pilon:85121..85981- (Gracilaria gracilis GNS1m male)
ATGCAAGATACCCTGGTAGGTCTCTGCGCAGCAGGACTGTGGGATGAGGC
TGATGCACTGATTGACCAACTGATTGCACTCAGTGAAGAGGAACTAGCCG
AAGCCCTCCAGGAGACACATGGTACTCCCAAGTGGACAAGTCTGCACTAT
GCGGCGATTTGCAAGCCGACCCCGAGCACTTTGGAGAAACTTGTGGATAG
CGGCGCTGATTTGGAAGCGCGCGGCAGTTCTGGAAGTACACCTTTGCATT
TGGCGGCGTGGAACGGTTGCGACGAAGCTGCGCATTTCCTCGTGGCGAAT
GGTGCAAGCATTGAGGCATCAAGCAAGAACGGGCGCACCCCGCTCATGTT
TGCCGCCAGGCGAGGGGATTCAGGCATGATGAACTCGCTAATTCAACTTG
GTGCCGACGTGAGAGCTCGTGACCAGCGCGGACGGTCGGCACTGCACTTT
GCTGCCCAATCAGGACAGGCTGATGCGATGCGTAAGCTCTTCCAGGAGGG
CGCGATTGAGGAAGCCGATGCAAATGGAGTGACTCCCGGCGACCTCGCCG
AGGGAGAAGCAAAGGACGTCCTTGACGACGACCTGCGTTCAGACTGGAGC
ATGCGAAGGGCTCTTTCTGGCGTGTTGAACATTCAGTCCTGGAGAGATCG
TTTTGCTGGGTTAGCTCGACACGTTGGCGGCAATGGATCGGTTCCGCCAA
GCCCACCGCCAAGCCCAGAATCAAGCCCGCGTTCGTCCAACCCTTCGTTG
TCTATTAGCAATCGACCCGTGAACCGCGGAGAACTTTATGCGGCTGTCGG
TGCAGGAGTGTTGATTAGCCTTCTGCTGCCGATAGCGAGAGGCGGTGGTA
GTCAGAGTTAA
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Coding sequence (CDS) from alignment at tig00000027_pilon:85121..85981-

>Ggra991.t1 ID=Ggra991.t1|Name=Ggra991.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=861bp|location=Sequence derived from alignment at tig00000027_pilon:85121..85981- (Gracilaria gracilis GNS1m male)
ATGCAAGATACCCTGGTAGGTCTCTGCGCAGCAGGACTGTGGGATGAGGC
TGATGCACTGATTGACCAACTGATTGCACTCAGTGAAGAGGAACTAGCCG
AAGCCCTCCAGGAGACACATGGTACTCCCAAGTGGACAAGTCTGCACTAT
GCGGCGATTTGCAAGCCGACCCCGAGCACTTTGGAGAAACTTGTGGATAG
CGGCGCTGATTTGGAAGCGCGCGGCAGTTCTGGAAGTACACCTTTGCATT
TGGCGGCGTGGAACGGTTGCGACGAAGCTGCGCATTTCCTCGTGGCGAAT
GGTGCAAGCATTGAGGCATCAAGCAAGAACGGGCGCACCCCGCTCATGTT
TGCCGCCAGGCGAGGGGATTCAGGCATGATGAACTCGCTAATTCAACTTG
GTGCCGACGTGAGAGCTCGTGACCAGCGCGGACGGTCGGCACTGCACTTT
GCTGCCCAATCAGGACAGGCTGATGCGATGCGTAAGCTCTTCCAGGAGGG
CGCGATTGAGGAAGCCGATGCAAATGGAGTGACTCCCGGCGACCTCGCCG
AGGGAGAAGCAAAGGACGTCCTTGACGACGACCTGCGTTCAGACTGGAGC
ATGCGAAGGGCTCTTTCTGGCGTGTTGAACATTCAGTCCTGGAGAGATCG
TTTTGCTGGGTTAGCTCGACACGTTGGCGGCAATGGATCGGTTCCGCCAA
GCCCACCGCCAAGCCCAGAATCAAGCCCGCGTTCGTCCAACCCTTCGTTG
TCTATTAGCAATCGACCCGTGAACCGCGGAGAACTTTATGCGGCTGTCGG
TGCAGGAGTGTTGATTAGCCTTCTGCTGCCGATAGCGAGAGGCGGTGGTA
GTCAGAGTTAA
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