Ggra9900.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9900.t1
Unique NameGgra9900.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length150
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000258_piloncontigtig00000258_pilon:20881..21330 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9900Ggra9900Gracilaria gracilis GNS1m malegenetig00000258_pilon 20881..21330 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9900.t1.stop1Ggra9900.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000258_pilon 20881..20883 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9900.t1.CDS1Ggra9900.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000258_pilon 20881..21330 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9900.t1.exon1Ggra9900.t1.exon1Gracilaria gracilis GNS1m maleexontig00000258_pilon 20881..21330 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9900.t1.start1Ggra9900.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000258_pilon 21328..21330 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9900.t1Ggra9900.t1Gracilaria gracilis GNS1m malepolypeptidetig00000258_pilon 20881..21330 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9900.t1 ID=Ggra9900.t1|Name=Ggra9900.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=150bp
MDWISAPSTVLKPWKRGKNDMGPFTVVILGDHNQLHQYKEMNSQKLKTAT
ETMLHPHFLERFVNVTGHRKVDLETSILFSFCLQYRCEDPMGRLWSSQFY
DGMIECSSFQSNDKVSRLKAQIGTSRYVPRTVTIVEFFHISVNLSSHGL*
back to top

spliced messenger RNA

>Ggra9900.t1 ID=Ggra9900.t1|Name=Ggra9900.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=450bp|location=Sequence derived from alignment at tig00000258_pilon:20881..21330- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATTGGATCAGCGCTCCAAGTACTGTTTTGAAGCCGTGGAAGCGAGG
AAAGAACGACATGGGACCTTTTACTGTCGTTATTTTAGGAGATCATAATC
AACTGCATCAGTATAAGGAGATGAATTCTCAGAAACTCAAAACAGCAACG
GAAACCATGTTACATCCTCACTTCCTCGAGAGGTTTGTCAATGTAACTGG
ACACCGCAAAGTTGATTTAGAGACTTCCATTTTGTTCAGCTTCTGCCTTC
AATACCGATGTGAGGATCCAATGGGACGTTTATGGAGCTCGCAGTTCTAC
GATGGAATGATTGAATGCTCGTCATTTCAAAGCAATGATAAAGTTTCGAG
GTTGAAGGCTCAAATTGGTACTTCTAGGTATGTACCGAGAACGGTTACCA
TTGTTGAGTTCTTCCATATATCCGTTAATCTTAGTAGTCATGGCCTATAG
back to top

protein sequence of Ggra9900.t1

>Ggra9900.t1 ID=Ggra9900.t1|Name=Ggra9900.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=150bp
MDWISAPSTVLKPWKRGKNDMGPFTVVILGDHNQLHQYKEMNSQKLKTAT
ETMLHPHFLERFVNVTGHRKVDLETSILFSFCLQYRCEDPMGRLWSSQFY
DGMIECSSFQSNDKVSRLKAQIGTSRYVPRTVTIVEFFHISVNLSSHGL*
back to top

mRNA from alignment at tig00000258_pilon:20881..21330-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9900.t1 ID=Ggra9900.t1|Name=Ggra9900.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=450bp|location=Sequence derived from alignment at tig00000258_pilon:20881..21330- (Gracilaria gracilis GNS1m male)
ATGGATTGGATCAGCGCTCCAAGTACTGTTTTGAAGCCGTGGAAGCGAGG
AAAGAACGACATGGGACCTTTTACTGTCGTTATTTTAGGAGATCATAATC
AACTGCATCAGTATAAGGAGATGAATTCTCAGAAACTCAAAACAGCAACG
GAAACCATGTTACATCCTCACTTCCTCGAGAGGTTTGTCAATGTAACTGG
ACACCGCAAAGTTGATTTAGAGACTTCCATTTTGTTCAGCTTCTGCCTTC
AATACCGATGTGAGGATCCAATGGGACGTTTATGGAGCTCGCAGTTCTAC
GATGGAATGATTGAATGCTCGTCATTTCAAAGCAATGATAAAGTTTCGAG
GTTGAAGGCTCAAATTGGTACTTCTAGGTATGTACCGAGAACGGTTACCA
TTGTTGAGTTCTTCCATATATCCGTTAATCTTAGTAGTCATGGCCTATAG
back to top

Coding sequence (CDS) from alignment at tig00000258_pilon:20881..21330-

>Ggra9900.t1 ID=Ggra9900.t1|Name=Ggra9900.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=450bp|location=Sequence derived from alignment at tig00000258_pilon:20881..21330- (Gracilaria gracilis GNS1m male)
ATGGATTGGATCAGCGCTCCAAGTACTGTTTTGAAGCCGTGGAAGCGAGG
AAAGAACGACATGGGACCTTTTACTGTCGTTATTTTAGGAGATCATAATC
AACTGCATCAGTATAAGGAGATGAATTCTCAGAAACTCAAAACAGCAACG
GAAACCATGTTACATCCTCACTTCCTCGAGAGGTTTGTCAATGTAACTGG
ACACCGCAAAGTTGATTTAGAGACTTCCATTTTGTTCAGCTTCTGCCTTC
AATACCGATGTGAGGATCCAATGGGACGTTTATGGAGCTCGCAGTTCTAC
GATGGAATGATTGAATGCTCGTCATTTCAAAGCAATGATAAAGTTTCGAG
GTTGAAGGCTCAAATTGGTACTTCTAGGTATGTACCGAGAACGGTTACCA
TTGTTGAGTTCTTCCATATATCCGTTAATCTTAGTAGTCATGGCCTATAG
back to top