Ggra9888.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9888.t1
Unique NameGgra9888.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length355
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000009_piloncontigtig00000009_pilon:36043..37227 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704343.1
Preferred nameUXS1
PFAMsGDP_Man_Dehyd
Max annot lvl2759|Eukaryota
KEGG rclassRC00508
KEGG koko:K08678
KEGG ReactionR01384
KEGG Pathwayko00520,ko01100,map00520,map01100
KEGG ModuleM00361
GOsGO:0000139,GO:0000166,GO:0001501,GO:0001503,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0005829,GO:0005886,GO:0005975,GO:0005996,GO:0006022,GO:0006023,GO:0006024,GO:0006029,GO:0006082,GO:0006139,GO:0006725,GO:0006790,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008460,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009226,GO:0009888,GO:0009987,GO:0012505,GO:0015012,GO:0016020,GO:0016043,GO:0016829,GO:0016830,GO:0016831,GO:0016835,GO:0016836,GO:0018130,GO:0019305,GO:0019321,GO:0019438,GO:0019538,GO:0022607,GO:0030166,GO:0030198,GO:0030201,GO:0030203,GO:0030204,GO:0030206,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0034641,GO:0034645,GO:0034654,GO:0036094,GO:0042732,GO:0042802,GO:0042803,GO:0043062,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046383,GO:0046483,GO:0046983,GO:0048037,GO:0048040,GO:0048513,GO:0048731,GO:0048856,GO:0050650,GO:0050654,GO:0050662,GO:0051216,GO:0051259,GO:0051262,GO:0051287,GO:0055086,GO:0061448,GO:0065003,GO:0070403,GO:0071704,GO:0071840,GO:0071944,GO:0097159,GO:0097708,GO:0098588,GO:0098791,GO:1901135,GO:1901137,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903510
Evalue7.71e-186
EggNOG OGsCOG0451@1|root,KOG1429@2759|Eukaryota
EC4.1.1.35
DescriptionUDP-glucuronate decarboxylase activity
COG categoryGM
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9888Ggra9888Gracilaria gracilis GNS1m malegenetig00000009_pilon 36043..37227 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9888.t1Ggra9888.t1Gracilaria gracilis GNS1m malepolypeptidetig00000009_pilon 36043..37227 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9888.t1.stop1Ggra9888.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000009_pilon 36043..36045 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9888.t1.CDS1Ggra9888.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000009_pilon 36043..37033 -
Ggra9888.t1.CDS2Ggra9888.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000009_pilon 37154..37227 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9888.t1.exon1Ggra9888.t1.exon1Gracilaria gracilis GNS1m maleexontig00000009_pilon 36043..37033 -
Ggra9888.t1.exon2Ggra9888.t1.exon2Gracilaria gracilis GNS1m maleexontig00000009_pilon 37154..37227 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9888.t1.intron1Ggra9888.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000009_pilon 37034..37153 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9888.t1.start1Ggra9888.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000009_pilon 37225..37227 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9888.t1 ID=Ggra9888.t1|Name=Ggra9888.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=355bp
MANEKLVDVQRPANGGEAIDNLAMWRGLNAPNRPDTHKRILVTGGAGFIG
SHLVDRLMEAGNEVIVVDSLFTGKKSNFEKWRLHPRFEFFRHDVTEPFNA
EVDQIYHLACPASPVHYKYNAIKTIKTNVLGTINMLGLAKRTGARFLLAS
TSEVYGDPEIHPQTEEYWGNVNPIGVRSCYDEGKRVSETLSFDYNRQHGV
EIRVVRIFNTYGPRMVLNDGRVVSNFVGQAIRGEPLTIYGDGLQTRSFCY
VADLVDGMVRMMNQDEYVGPFNVGNPGEFTMRELAEIVKDLVNSKLDIKF
LPATPDDPMKRKPDISKAKKHLGWEPKVALRDGLVPMVEDFKARILGESA
TVDE*
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spliced messenger RNA

>Ggra9888.t1 ID=Ggra9888.t1|Name=Ggra9888.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1065bp|location=Sequence derived from alignment at tig00000009_pilon:36043..37227- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAAACGAGAAGCTTGTCGACGTTCAACGGCCTGCCAATGGCGGCGA
AGCCATCGATAACCTCGCCATGTGGCGCGGCCTCAATGCTCCAAACCGTC
CAGATACGCACAAACGCATTCTTGTCACCGGTGGTGCTGGATTCATTGGA
TCCCATCTCGTTGATCGACTAATGGAAGCTGGAAACGAGGTCATCGTGGT
CGACTCCCTGTTCACGGGCAAGAAAAGTAACTTTGAGAAGTGGCGTCTCC
ACCCGCGATTCGAGTTCTTCCGCCACGACGTAACTGAGCCGTTTAACGCC
GAAGTGGACCAGATTTATCACCTGGCCTGTCCGGCCTCACCTGTGCATTA
CAAGTACAACGCCATCAAAACCATCAAGACCAATGTTTTGGGTACGATTA
ACATGCTTGGCCTTGCCAAACGAACTGGTGCTCGCTTCTTGCTGGCATCC
ACTTCCGAGGTGTATGGTGATCCTGAAATCCACCCGCAAACCGAGGAGTA
TTGGGGTAATGTCAATCCCATCGGCGTCCGTTCGTGTTATGACGAGGGTA
AGCGCGTTTCTGAAACGTTAAGCTTCGACTATAACAGGCAGCATGGCGTT
GAGATTCGAGTTGTCCGCATCTTCAATACGTATGGTCCGCGCATGGTTCT
CAATGATGGAAGGGTGGTGTCCAACTTTGTTGGACAGGCTATTCGTGGCG
AACCTCTCACCATCTACGGTGATGGTCTACAAACTCGCAGTTTCTGTTAT
GTGGCTGATCTGGTTGACGGCATGGTGCGAATGATGAATCAGGACGAATA
TGTGGGACCCTTCAACGTTGGTAACCCAGGAGAGTTCACAATGAGAGAGC
TTGCTGAGATTGTCAAAGACCTTGTCAATTCCAAATTGGACATTAAGTTT
CTGCCTGCCACTCCAGACGATCCTATGAAGCGTAAGCCGGACATTTCGAA
GGCCAAGAAACACCTTGGATGGGAACCCAAGGTGGCCCTCAGAGACGGCC
TAGTGCCCATGGTTGAAGATTTCAAAGCCCGCATATTGGGAGAAAGTGCG
ACAGTAGACGAATAG
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protein sequence of Ggra9888.t1

>Ggra9888.t1 ID=Ggra9888.t1|Name=Ggra9888.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=355bp
MANEKLVDVQRPANGGEAIDNLAMWRGLNAPNRPDTHKRILVTGGAGFIG
SHLVDRLMEAGNEVIVVDSLFTGKKSNFEKWRLHPRFEFFRHDVTEPFNA
EVDQIYHLACPASPVHYKYNAIKTIKTNVLGTINMLGLAKRTGARFLLAS
TSEVYGDPEIHPQTEEYWGNVNPIGVRSCYDEGKRVSETLSFDYNRQHGV
EIRVVRIFNTYGPRMVLNDGRVVSNFVGQAIRGEPLTIYGDGLQTRSFCY
VADLVDGMVRMMNQDEYVGPFNVGNPGEFTMRELAEIVKDLVNSKLDIKF
LPATPDDPMKRKPDISKAKKHLGWEPKVALRDGLVPMVEDFKARILGESA
TVDE*
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mRNA from alignment at tig00000009_pilon:36043..37227-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9888.t1 ID=Ggra9888.t1|Name=Ggra9888.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1185bp|location=Sequence derived from alignment at tig00000009_pilon:36043..37227- (Gracilaria gracilis GNS1m male)
ATGGCAAACGAGAAGCTTGTCGACGTTCAACGGCCTGCCAATGGCGGCGA
AGCCATCGATAACCTCGCCATGTGGTAAGTTCTGCACCTTCACCGTTACC
TGTCCGTGACTACATGCACACGTCCATGTTCATCGTGAGTGCCTAACCTT
CTCATGTCCTGTTCTGAATCTGTGCGATTCTGATCAACCTAAAGGCGCGG
CCTCAATGCTCCAAACCGTCCAGATACGCACAAACGCATTCTTGTCACCG
GTGGTGCTGGATTCATTGGATCCCATCTCGTTGATCGACTAATGGAAGCT
GGAAACGAGGTCATCGTGGTCGACTCCCTGTTCACGGGCAAGAAAAGTAA
CTTTGAGAAGTGGCGTCTCCACCCGCGATTCGAGTTCTTCCGCCACGACG
TAACTGAGCCGTTTAACGCCGAAGTGGACCAGATTTATCACCTGGCCTGT
CCGGCCTCACCTGTGCATTACAAGTACAACGCCATCAAAACCATCAAGAC
CAATGTTTTGGGTACGATTAACATGCTTGGCCTTGCCAAACGAACTGGTG
CTCGCTTCTTGCTGGCATCCACTTCCGAGGTGTATGGTGATCCTGAAATC
CACCCGCAAACCGAGGAGTATTGGGGTAATGTCAATCCCATCGGCGTCCG
TTCGTGTTATGACGAGGGTAAGCGCGTTTCTGAAACGTTAAGCTTCGACT
ATAACAGGCAGCATGGCGTTGAGATTCGAGTTGTCCGCATCTTCAATACG
TATGGTCCGCGCATGGTTCTCAATGATGGAAGGGTGGTGTCCAACTTTGT
TGGACAGGCTATTCGTGGCGAACCTCTCACCATCTACGGTGATGGTCTAC
AAACTCGCAGTTTCTGTTATGTGGCTGATCTGGTTGACGGCATGGTGCGA
ATGATGAATCAGGACGAATATGTGGGACCCTTCAACGTTGGTAACCCAGG
AGAGTTCACAATGAGAGAGCTTGCTGAGATTGTCAAAGACCTTGTCAATT
CCAAATTGGACATTAAGTTTCTGCCTGCCACTCCAGACGATCCTATGAAG
CGTAAGCCGGACATTTCGAAGGCCAAGAAACACCTTGGATGGGAACCCAA
GGTGGCCCTCAGAGACGGCCTAGTGCCCATGGTTGAAGATTTCAAAGCCC
GCATATTGGGAGAAAGTGCGACAGTAGACGAATAG
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Coding sequence (CDS) from alignment at tig00000009_pilon:36043..37227-

>Ggra9888.t1 ID=Ggra9888.t1|Name=Ggra9888.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1065bp|location=Sequence derived from alignment at tig00000009_pilon:36043..37227- (Gracilaria gracilis GNS1m male)
ATGGCAAACGAGAAGCTTGTCGACGTTCAACGGCCTGCCAATGGCGGCGA
AGCCATCGATAACCTCGCCATGTGGCGCGGCCTCAATGCTCCAAACCGTC
CAGATACGCACAAACGCATTCTTGTCACCGGTGGTGCTGGATTCATTGGA
TCCCATCTCGTTGATCGACTAATGGAAGCTGGAAACGAGGTCATCGTGGT
CGACTCCCTGTTCACGGGCAAGAAAAGTAACTTTGAGAAGTGGCGTCTCC
ACCCGCGATTCGAGTTCTTCCGCCACGACGTAACTGAGCCGTTTAACGCC
GAAGTGGACCAGATTTATCACCTGGCCTGTCCGGCCTCACCTGTGCATTA
CAAGTACAACGCCATCAAAACCATCAAGACCAATGTTTTGGGTACGATTA
ACATGCTTGGCCTTGCCAAACGAACTGGTGCTCGCTTCTTGCTGGCATCC
ACTTCCGAGGTGTATGGTGATCCTGAAATCCACCCGCAAACCGAGGAGTA
TTGGGGTAATGTCAATCCCATCGGCGTCCGTTCGTGTTATGACGAGGGTA
AGCGCGTTTCTGAAACGTTAAGCTTCGACTATAACAGGCAGCATGGCGTT
GAGATTCGAGTTGTCCGCATCTTCAATACGTATGGTCCGCGCATGGTTCT
CAATGATGGAAGGGTGGTGTCCAACTTTGTTGGACAGGCTATTCGTGGCG
AACCTCTCACCATCTACGGTGATGGTCTACAAACTCGCAGTTTCTGTTAT
GTGGCTGATCTGGTTGACGGCATGGTGCGAATGATGAATCAGGACGAATA
TGTGGGACCCTTCAACGTTGGTAACCCAGGAGAGTTCACAATGAGAGAGC
TTGCTGAGATTGTCAAAGACCTTGTCAATTCCAAATTGGACATTAAGTTT
CTGCCTGCCACTCCAGACGATCCTATGAAGCGTAAGCCGGACATTTCGAA
GGCCAAGAAACACCTTGGATGGGAACCCAAGGTGGCCCTCAGAGACGGCC
TAGTGCCCATGGTTGAAGATTTCAAAGCCCGCATATTGGGAGAAAGTGCG
ACAGTAGACGAATAG
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