Ggra9874.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9874.t1
Unique NameGgra9874.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length239
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000170_piloncontigtig00000170_pilon:180377..181093 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog570967.JMLV01000017_gene791
PFAMsMethyltransf_11,Methyltransf_25
Max annot lvl204441|Rhodospirillales
Evalue9.03e-23
EggNOG OGsCOG4976@1|root,COG4976@2|Bacteria,1RJBE@1224|Proteobacteria,2U9XU@28211|Alphaproteobacteria,2JUBV@204441|Rhodospirillales
DescriptionMethyltransferase domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9874Ggra9874Gracilaria gracilis GNS1m malegenetig00000170_pilon 180377..181093 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9874.t1.stop1Ggra9874.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000170_pilon 180377..180379 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9874.t1.CDS1Ggra9874.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000170_pilon 180377..181093 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9874.t1.exon1Ggra9874.t1.exon1Gracilaria gracilis GNS1m maleexontig00000170_pilon 180377..181093 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9874.t1.start1Ggra9874.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000170_pilon 181091..181093 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9874.t1Ggra9874.t1Gracilaria gracilis GNS1m malepolypeptidetig00000170_pilon 180377..181093 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9874.t1 ID=Ggra9874.t1|Name=Ggra9874.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=239bp
MTSQKLHTASQSSHTWSMSEIHTITMSSAPKEQKVGAYRQWAKSYDVDVL
GSEYVAFDIAAEKLSRVIRNDSGLRMLDMVHMLDAGCGTGLCAVPFKKVA
EEFQLPFRLTGVDFSEEMLQKASHRKVYGELYCADMNYPLPVAAGTQHLC
MSIGVFLEGHCGPKALGNILVCLAAGGYAVISIRQKHFSTLKDQFLGVIG
ETRCTVIEQSVCAYLGPVEAVYMVLRKAQDKAGHTTGN*
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spliced messenger RNA

>Ggra9874.t1 ID=Ggra9874.t1|Name=Ggra9874.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=717bp|location=Sequence derived from alignment at tig00000170_pilon:180377..181093- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACATCTCAGAAGCTTCACACCGCCTCCCAATCGTCTCACACCTGGAG
CATGTCCGAAATTCACACAATCACCATGTCATCCGCCCCCAAGGAGCAGA
AGGTCGGTGCGTATCGTCAGTGGGCAAAAAGCTATGATGTCGATGTTTTA
GGCTCTGAATACGTAGCGTTTGATATTGCAGCCGAGAAGCTATCCAGGGT
GATTCGTAATGACAGTGGTCTCAGAATGCTGGACATGGTTCACATGCTGG
ACGCGGGTTGCGGGACTGGTCTCTGTGCAGTTCCTTTCAAGAAGGTAGCG
GAAGAGTTTCAGCTACCGTTTCGTCTGACTGGGGTGGACTTCAGCGAAGA
AATGCTACAGAAAGCATCCCATAGAAAAGTGTATGGTGAGCTCTACTGTG
CAGATATGAACTACCCTCTGCCTGTGGCAGCCGGCACACAGCATTTGTGT
ATGTCAATTGGAGTATTTCTGGAGGGCCATTGCGGTCCCAAAGCGCTCGG
AAATATTCTTGTTTGTCTGGCTGCGGGAGGTTACGCTGTGATCTCTATCC
GCCAAAAGCACTTTAGCACTCTCAAGGATCAGTTCTTGGGGGTTATAGGC
GAGACGCGATGTACAGTTATAGAGCAGAGTGTTTGTGCGTACCTGGGTCC
GGTTGAGGCAGTGTACATGGTGCTGAGGAAGGCACAGGATAAGGCAGGCC
ACACTACCGGCAATTAG
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protein sequence of Ggra9874.t1

>Ggra9874.t1 ID=Ggra9874.t1|Name=Ggra9874.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=239bp
MTSQKLHTASQSSHTWSMSEIHTITMSSAPKEQKVGAYRQWAKSYDVDVL
GSEYVAFDIAAEKLSRVIRNDSGLRMLDMVHMLDAGCGTGLCAVPFKKVA
EEFQLPFRLTGVDFSEEMLQKASHRKVYGELYCADMNYPLPVAAGTQHLC
MSIGVFLEGHCGPKALGNILVCLAAGGYAVISIRQKHFSTLKDQFLGVIG
ETRCTVIEQSVCAYLGPVEAVYMVLRKAQDKAGHTTGN*
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mRNA from alignment at tig00000170_pilon:180377..181093-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9874.t1 ID=Ggra9874.t1|Name=Ggra9874.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=717bp|location=Sequence derived from alignment at tig00000170_pilon:180377..181093- (Gracilaria gracilis GNS1m male)
ATGACATCTCAGAAGCTTCACACCGCCTCCCAATCGTCTCACACCTGGAG
CATGTCCGAAATTCACACAATCACCATGTCATCCGCCCCCAAGGAGCAGA
AGGTCGGTGCGTATCGTCAGTGGGCAAAAAGCTATGATGTCGATGTTTTA
GGCTCTGAATACGTAGCGTTTGATATTGCAGCCGAGAAGCTATCCAGGGT
GATTCGTAATGACAGTGGTCTCAGAATGCTGGACATGGTTCACATGCTGG
ACGCGGGTTGCGGGACTGGTCTCTGTGCAGTTCCTTTCAAGAAGGTAGCG
GAAGAGTTTCAGCTACCGTTTCGTCTGACTGGGGTGGACTTCAGCGAAGA
AATGCTACAGAAAGCATCCCATAGAAAAGTGTATGGTGAGCTCTACTGTG
CAGATATGAACTACCCTCTGCCTGTGGCAGCCGGCACACAGCATTTGTGT
ATGTCAATTGGAGTATTTCTGGAGGGCCATTGCGGTCCCAAAGCGCTCGG
AAATATTCTTGTTTGTCTGGCTGCGGGAGGTTACGCTGTGATCTCTATCC
GCCAAAAGCACTTTAGCACTCTCAAGGATCAGTTCTTGGGGGTTATAGGC
GAGACGCGATGTACAGTTATAGAGCAGAGTGTTTGTGCGTACCTGGGTCC
GGTTGAGGCAGTGTACATGGTGCTGAGGAAGGCACAGGATAAGGCAGGCC
ACACTACCGGCAATTAG
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Coding sequence (CDS) from alignment at tig00000170_pilon:180377..181093-

>Ggra9874.t1 ID=Ggra9874.t1|Name=Ggra9874.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=717bp|location=Sequence derived from alignment at tig00000170_pilon:180377..181093- (Gracilaria gracilis GNS1m male)
ATGACATCTCAGAAGCTTCACACCGCCTCCCAATCGTCTCACACCTGGAG
CATGTCCGAAATTCACACAATCACCATGTCATCCGCCCCCAAGGAGCAGA
AGGTCGGTGCGTATCGTCAGTGGGCAAAAAGCTATGATGTCGATGTTTTA
GGCTCTGAATACGTAGCGTTTGATATTGCAGCCGAGAAGCTATCCAGGGT
GATTCGTAATGACAGTGGTCTCAGAATGCTGGACATGGTTCACATGCTGG
ACGCGGGTTGCGGGACTGGTCTCTGTGCAGTTCCTTTCAAGAAGGTAGCG
GAAGAGTTTCAGCTACCGTTTCGTCTGACTGGGGTGGACTTCAGCGAAGA
AATGCTACAGAAAGCATCCCATAGAAAAGTGTATGGTGAGCTCTACTGTG
CAGATATGAACTACCCTCTGCCTGTGGCAGCCGGCACACAGCATTTGTGT
ATGTCAATTGGAGTATTTCTGGAGGGCCATTGCGGTCCCAAAGCGCTCGG
AAATATTCTTGTTTGTCTGGCTGCGGGAGGTTACGCTGTGATCTCTATCC
GCCAAAAGCACTTTAGCACTCTCAAGGATCAGTTCTTGGGGGTTATAGGC
GAGACGCGATGTACAGTTATAGAGCAGAGTGTTTGTGCGTACCTGGGTCC
GGTTGAGGCAGTGTACATGGTGCTGAGGAAGGCACAGGATAAGGCAGGCC
ACACTACCGGCAATTAG
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