Ggra987.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra987.t1
Unique NameGgra987.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length160
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000027_piloncontigtig00000027_pilon:78325..78865 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra987Ggra987Gracilaria gracilis GNS1m malegenetig00000027_pilon 78325..78865 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra987.t1Ggra987.t1Gracilaria gracilis GNS1m malepolypeptidetig00000027_pilon 78325..78865 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra987.t1.start1Ggra987.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000027_pilon 78325..78327 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra987.t1.CDS1Ggra987.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000027_pilon 78325..78710 +
Ggra987.t1.CDS2Ggra987.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000027_pilon 78772..78865 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra987.t1.exon1Ggra987.t1.exon1Gracilaria gracilis GNS1m maleexontig00000027_pilon 78325..78710 +
Ggra987.t1.exon2Ggra987.t1.exon2Gracilaria gracilis GNS1m maleexontig00000027_pilon 78772..78865 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra987.t1.intron1Ggra987.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000027_pilon 78711..78771 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra987.t1.stop1Ggra987.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000027_pilon 78863..78865 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra987.t1 ID=Ggra987.t1|Name=Ggra987.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=160bp
MLFSLVFISVLLHLSTGSMIFCTEKGGCLLEDGSQLTCTGLPQKAGTQIL
SAEESDGKFVATSEVTLTSEARASSGGVARMGAVAPAPLGATAPVAAISL
TSPNTATLGLGGSRGRLLLETSTFSFNIVTGAGPPIAIPLAASEEWGSLH
LVARIVAAE*
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spliced messenger RNA

>Ggra987.t1 ID=Ggra987.t1|Name=Ggra987.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=480bp|location=Sequence derived from alignment at tig00000027_pilon:78325..78865+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGTTCTCTCTCGTATTCATTTCAGTGCTCCTCCATCTGAGCACCGG
CTCCATGATCTTCTGCACTGAGAAAGGCGGCTGCCTGCTGGAAGACGGCT
CTCAACTGACGTGCACCGGCTTGCCGCAGAAGGCGGGCACTCAGATTCTC
AGCGCCGAAGAGTCGGACGGCAAGTTTGTGGCCACATCCGAGGTGACGTT
GACGTCCGAAGCGCGCGCATCCAGCGGGGGCGTTGCGCGCATGGGTGCCG
TGGCGCCTGCTCCGCTGGGTGCCACGGCGCCAGTGGCAGCAATATCGCTC
ACGTCGCCAAACACGGCCACATTGGGGCTGGGCGGTTCGAGGGGTAGACT
GCTGCTGGAGACGAGCACTTTCTCGTTTAACATCGTAACTGGTGCCGGGC
CACCAATTGCCATCCCACTTGCGGCAAGTGAGGAATGGGGCTCGCTCCAC
TTGGTCGCACGCATAGTTGCTGCTGAATAA
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protein sequence of Ggra987.t1

>Ggra987.t1 ID=Ggra987.t1|Name=Ggra987.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=160bp
MLFSLVFISVLLHLSTGSMIFCTEKGGCLLEDGSQLTCTGLPQKAGTQIL
SAEESDGKFVATSEVTLTSEARASSGGVARMGAVAPAPLGATAPVAAISL
TSPNTATLGLGGSRGRLLLETSTFSFNIVTGAGPPIAIPLAASEEWGSLH
LVARIVAAE*
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mRNA from alignment at tig00000027_pilon:78325..78865+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra987.t1 ID=Ggra987.t1|Name=Ggra987.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=541bp|location=Sequence derived from alignment at tig00000027_pilon:78325..78865+ (Gracilaria gracilis GNS1m male)
ATGTTGTTCTCTCTCGTATTCATTTCAGTGCTCCTCCATCTGAGCACCGG
CTCCATGATCTTCTGCACTGAGAAAGGCGGCTGCCTGCTGGAAGACGGCT
CTCAACTGACGTGCACCGGCTTGCCGCAGAAGGCGGGCACTCAGATTCTC
AGCGCCGAAGAGTCGGACGGCAAGTTTGTGGCCACATCCGAGGTGACGTT
GACGTCCGAAGCGCGCGCATCCAGCGGGGGCGTTGCGCGCATGGGTGCCG
TGGCGCCTGCTCCGCTGGGTGCCACGGCGCCAGTGGCAGCAATATCGCTC
ACGTCGCCAAACACGGCCACATTGGGGCTGGGCGGTTCGAGGGGTAGACT
GCTGCTGGAGACGAGCACTTTCTCGTTTAACATCGTGTGCTTGCGCTCTA
TTTCGGCGCCTTTTGGAATGTGTTGTTGCGCTTGTCCGTACTTTCAGAAC
TGGTGCCGGGCCACCAATTGCCATCCCACTTGCGGCAAGTGAGGAATGGG
GCTCGCTCCACTTGGTCGCACGCATAGTTGCTGCTGAATAA
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Coding sequence (CDS) from alignment at tig00000027_pilon:78325..78865+

>Ggra987.t1 ID=Ggra987.t1|Name=Ggra987.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=480bp|location=Sequence derived from alignment at tig00000027_pilon:78325..78865+ (Gracilaria gracilis GNS1m male)
ATGTTGTTCTCTCTCGTATTCATTTCAGTGCTCCTCCATCTGAGCACCGG
CTCCATGATCTTCTGCACTGAGAAAGGCGGCTGCCTGCTGGAAGACGGCT
CTCAACTGACGTGCACCGGCTTGCCGCAGAAGGCGGGCACTCAGATTCTC
AGCGCCGAAGAGTCGGACGGCAAGTTTGTGGCCACATCCGAGGTGACGTT
GACGTCCGAAGCGCGCGCATCCAGCGGGGGCGTTGCGCGCATGGGTGCCG
TGGCGCCTGCTCCGCTGGGTGCCACGGCGCCAGTGGCAGCAATATCGCTC
ACGTCGCCAAACACGGCCACATTGGGGCTGGGCGGTTCGAGGGGTAGACT
GCTGCTGGAGACGAGCACTTTCTCGTTTAACATCGTAACTGGTGCCGGGC
CACCAATTGCCATCCCACTTGCGGCAAGTGAGGAATGGGGCTCGCTCCAC
TTGGTCGCACGCATAGTTGCTGCTGAATAA
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