Ggra9846.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9846.t1
Unique NameGgra9846.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length487
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000170_piloncontigtig00000170_pilon:61174..62634 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog248742.XP_005649601.1
PFAMsPaO,Rieske
Max annot lvl3041|Chlorophyta
KEGG rclassRC03394
KEGG koko:K13071
KEGG ReactionR08921
KEGG Pathwayko00860,ko01110,map00860,map01110
Evalue9.79e-43
EggNOG OGsCOG4638@1|root,2QQ8U@2759|Eukaryota,37MEC@33090|Viridiplantae,34J36@3041|Chlorophyta
EC1.14.15.17
DescriptionRieske [2Fe-2S] domain
COG categoryP
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9846Ggra9846Gracilaria gracilis GNS1m malegenetig00000170_pilon 61174..62634 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9846.t1.stop1Ggra9846.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000170_pilon 61174..61176 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9846.t1.CDS1Ggra9846.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000170_pilon 61174..62634 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9846.t1.exon1Ggra9846.t1.exon1Gracilaria gracilis GNS1m maleexontig00000170_pilon 61174..62634 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9846.t1.start1Ggra9846.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000170_pilon 62632..62634 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9846.t1Ggra9846.t1Gracilaria gracilis GNS1m malepolypeptidetig00000170_pilon 61174..62634 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9846.t1 ID=Ggra9846.t1|Name=Ggra9846.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=487bp
MTQGSVASPESSAVSEQPYSWLNNWFPVAYTFDIQDKPYAFTIFSRRYVL
YRDASGEYVVFDDMCPHRAAPLSEGRVVSSVDASGSPQKVIECPYHGWRF
NSDGVCVRVPQSPSQDGLSSKCNLQQKYPTKLVVGKLVMVYLGDCSHRSF
EEVPVPDHVAANLEKYEVYRCIARLMPVSFSSIFDNVLDPAHVAWAHHGT
NQGNRNRVDPLSYVKVRSYSGNRMEASVRLSAKSGDINVRVLAPTYISYA
FPLGNGAFLLNWIRAVSVDSCILFTVFAVFQPKMVVKSVIRTIPEWAWHA
DANLILDGDTAMLRYQTDNLLRSKKAVGDASWRQVFYLGETAMDSAVFRF
RKWLDANIDSIPFSEAELRAAITGANYKMSARYINDRYEHHTKHCVICSA
ALRNARIIRMVALCLGAIVVSALVGSAVAVTVVKSSVRADSMRAVARWGG
WLVGLLVVCGAVAIGSDRSIRSLTFTTKAHDLHEKD*
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spliced messenger RNA

>Ggra9846.t1 ID=Ggra9846.t1|Name=Ggra9846.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1461bp|location=Sequence derived from alignment at tig00000170_pilon:61174..62634- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCCAAGGCTCCGTCGCGAGCCCGGAGTCAAGCGCGGTTTCTGAACA
ACCTTATTCATGGCTGAACAACTGGTTCCCGGTGGCTTACACATTTGACA
TACAAGACAAACCGTATGCTTTCACTATCTTCTCGAGAAGATATGTCTTG
TATCGTGATGCGAGTGGTGAGTACGTCGTGTTTGATGACATGTGTCCGCA
TCGCGCGGCGCCTCTCTCTGAAGGAAGAGTGGTAAGCAGTGTTGATGCGA
GTGGAAGCCCACAAAAGGTAATAGAATGTCCATATCACGGCTGGCGTTTC
AACTCAGATGGCGTTTGTGTTCGTGTACCTCAATCACCGAGCCAGGACGG
CCTCTCTTCAAAATGCAATCTTCAACAAAAGTATCCAACAAAGCTAGTGG
TCGGTAAGCTAGTTATGGTGTATCTAGGAGATTGTTCTCACCGCAGTTTT
GAAGAGGTGCCCGTCCCAGACCACGTAGCAGCCAACCTGGAAAAGTACGA
GGTATATCGATGCATCGCACGCCTGATGCCGGTATCTTTCAGTTCAATTT
TCGACAACGTTCTAGACCCTGCGCACGTAGCGTGGGCGCATCACGGCACC
AACCAAGGGAACCGAAATCGCGTTGATCCGCTCTCCTACGTCAAAGTACG
CAGTTATAGCGGCAATCGTATGGAGGCGAGCGTGAGACTTTCTGCCAAGT
CGGGCGATATTAACGTGCGCGTGCTGGCGCCTACTTACATCTCGTACGCG
TTTCCGCTTGGAAATGGCGCGTTTCTTCTGAATTGGATCAGGGCCGTATC
GGTTGACTCATGCATTTTGTTCACGGTGTTTGCGGTGTTCCAACCGAAGA
TGGTGGTGAAAAGCGTGATTCGCACGATCCCAGAATGGGCGTGGCACGCG
GATGCCAACCTGATTCTGGATGGCGATACAGCAATGTTGCGGTATCAGAC
AGACAACCTTCTGCGTTCAAAGAAGGCAGTGGGAGATGCATCTTGGAGAC
AAGTGTTCTATCTAGGCGAAACGGCGATGGATTCAGCTGTGTTTCGATTC
AGAAAGTGGTTGGACGCCAACATTGATAGCATACCGTTCTCTGAAGCGGA
GCTGAGAGCAGCGATTACCGGAGCAAACTACAAAATGAGCGCGCGGTATA
TCAATGACCGATACGAACACCACACGAAGCACTGCGTGATTTGCAGCGCT
GCGCTGCGCAACGCACGAATAATACGGATGGTGGCTCTGTGCCTGGGGGC
GATTGTGGTGAGCGCCCTTGTGGGGAGCGCGGTAGCGGTGACAGTGGTGA
AGAGCAGTGTGAGGGCAGACTCGATGCGCGCCGTAGCGAGATGGGGCGGG
TGGCTGGTGGGGCTGTTGGTGGTGTGCGGGGCGGTGGCGATTGGGAGCGA
TAGGTCGATTCGATCGCTGACATTCACCACCAAGGCACATGACCTGCACG
AAAAGGACTGA
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protein sequence of Ggra9846.t1

>Ggra9846.t1 ID=Ggra9846.t1|Name=Ggra9846.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=487bp
MTQGSVASPESSAVSEQPYSWLNNWFPVAYTFDIQDKPYAFTIFSRRYVL
YRDASGEYVVFDDMCPHRAAPLSEGRVVSSVDASGSPQKVIECPYHGWRF
NSDGVCVRVPQSPSQDGLSSKCNLQQKYPTKLVVGKLVMVYLGDCSHRSF
EEVPVPDHVAANLEKYEVYRCIARLMPVSFSSIFDNVLDPAHVAWAHHGT
NQGNRNRVDPLSYVKVRSYSGNRMEASVRLSAKSGDINVRVLAPTYISYA
FPLGNGAFLLNWIRAVSVDSCILFTVFAVFQPKMVVKSVIRTIPEWAWHA
DANLILDGDTAMLRYQTDNLLRSKKAVGDASWRQVFYLGETAMDSAVFRF
RKWLDANIDSIPFSEAELRAAITGANYKMSARYINDRYEHHTKHCVICSA
ALRNARIIRMVALCLGAIVVSALVGSAVAVTVVKSSVRADSMRAVARWGG
WLVGLLVVCGAVAIGSDRSIRSLTFTTKAHDLHEKD*
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mRNA from alignment at tig00000170_pilon:61174..62634-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9846.t1 ID=Ggra9846.t1|Name=Ggra9846.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1461bp|location=Sequence derived from alignment at tig00000170_pilon:61174..62634- (Gracilaria gracilis GNS1m male)
ATGACCCAAGGCTCCGTCGCGAGCCCGGAGTCAAGCGCGGTTTCTGAACA
ACCTTATTCATGGCTGAACAACTGGTTCCCGGTGGCTTACACATTTGACA
TACAAGACAAACCGTATGCTTTCACTATCTTCTCGAGAAGATATGTCTTG
TATCGTGATGCGAGTGGTGAGTACGTCGTGTTTGATGACATGTGTCCGCA
TCGCGCGGCGCCTCTCTCTGAAGGAAGAGTGGTAAGCAGTGTTGATGCGA
GTGGAAGCCCACAAAAGGTAATAGAATGTCCATATCACGGCTGGCGTTTC
AACTCAGATGGCGTTTGTGTTCGTGTACCTCAATCACCGAGCCAGGACGG
CCTCTCTTCAAAATGCAATCTTCAACAAAAGTATCCAACAAAGCTAGTGG
TCGGTAAGCTAGTTATGGTGTATCTAGGAGATTGTTCTCACCGCAGTTTT
GAAGAGGTGCCCGTCCCAGACCACGTAGCAGCCAACCTGGAAAAGTACGA
GGTATATCGATGCATCGCACGCCTGATGCCGGTATCTTTCAGTTCAATTT
TCGACAACGTTCTAGACCCTGCGCACGTAGCGTGGGCGCATCACGGCACC
AACCAAGGGAACCGAAATCGCGTTGATCCGCTCTCCTACGTCAAAGTACG
CAGTTATAGCGGCAATCGTATGGAGGCGAGCGTGAGACTTTCTGCCAAGT
CGGGCGATATTAACGTGCGCGTGCTGGCGCCTACTTACATCTCGTACGCG
TTTCCGCTTGGAAATGGCGCGTTTCTTCTGAATTGGATCAGGGCCGTATC
GGTTGACTCATGCATTTTGTTCACGGTGTTTGCGGTGTTCCAACCGAAGA
TGGTGGTGAAAAGCGTGATTCGCACGATCCCAGAATGGGCGTGGCACGCG
GATGCCAACCTGATTCTGGATGGCGATACAGCAATGTTGCGGTATCAGAC
AGACAACCTTCTGCGTTCAAAGAAGGCAGTGGGAGATGCATCTTGGAGAC
AAGTGTTCTATCTAGGCGAAACGGCGATGGATTCAGCTGTGTTTCGATTC
AGAAAGTGGTTGGACGCCAACATTGATAGCATACCGTTCTCTGAAGCGGA
GCTGAGAGCAGCGATTACCGGAGCAAACTACAAAATGAGCGCGCGGTATA
TCAATGACCGATACGAACACCACACGAAGCACTGCGTGATTTGCAGCGCT
GCGCTGCGCAACGCACGAATAATACGGATGGTGGCTCTGTGCCTGGGGGC
GATTGTGGTGAGCGCCCTTGTGGGGAGCGCGGTAGCGGTGACAGTGGTGA
AGAGCAGTGTGAGGGCAGACTCGATGCGCGCCGTAGCGAGATGGGGCGGG
TGGCTGGTGGGGCTGTTGGTGGTGTGCGGGGCGGTGGCGATTGGGAGCGA
TAGGTCGATTCGATCGCTGACATTCACCACCAAGGCACATGACCTGCACG
AAAAGGACTGA
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Coding sequence (CDS) from alignment at tig00000170_pilon:61174..62634-

>Ggra9846.t1 ID=Ggra9846.t1|Name=Ggra9846.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1461bp|location=Sequence derived from alignment at tig00000170_pilon:61174..62634- (Gracilaria gracilis GNS1m male)
ATGACCCAAGGCTCCGTCGCGAGCCCGGAGTCAAGCGCGGTTTCTGAACA
ACCTTATTCATGGCTGAACAACTGGTTCCCGGTGGCTTACACATTTGACA
TACAAGACAAACCGTATGCTTTCACTATCTTCTCGAGAAGATATGTCTTG
TATCGTGATGCGAGTGGTGAGTACGTCGTGTTTGATGACATGTGTCCGCA
TCGCGCGGCGCCTCTCTCTGAAGGAAGAGTGGTAAGCAGTGTTGATGCGA
GTGGAAGCCCACAAAAGGTAATAGAATGTCCATATCACGGCTGGCGTTTC
AACTCAGATGGCGTTTGTGTTCGTGTACCTCAATCACCGAGCCAGGACGG
CCTCTCTTCAAAATGCAATCTTCAACAAAAGTATCCAACAAAGCTAGTGG
TCGGTAAGCTAGTTATGGTGTATCTAGGAGATTGTTCTCACCGCAGTTTT
GAAGAGGTGCCCGTCCCAGACCACGTAGCAGCCAACCTGGAAAAGTACGA
GGTATATCGATGCATCGCACGCCTGATGCCGGTATCTTTCAGTTCAATTT
TCGACAACGTTCTAGACCCTGCGCACGTAGCGTGGGCGCATCACGGCACC
AACCAAGGGAACCGAAATCGCGTTGATCCGCTCTCCTACGTCAAAGTACG
CAGTTATAGCGGCAATCGTATGGAGGCGAGCGTGAGACTTTCTGCCAAGT
CGGGCGATATTAACGTGCGCGTGCTGGCGCCTACTTACATCTCGTACGCG
TTTCCGCTTGGAAATGGCGCGTTTCTTCTGAATTGGATCAGGGCCGTATC
GGTTGACTCATGCATTTTGTTCACGGTGTTTGCGGTGTTCCAACCGAAGA
TGGTGGTGAAAAGCGTGATTCGCACGATCCCAGAATGGGCGTGGCACGCG
GATGCCAACCTGATTCTGGATGGCGATACAGCAATGTTGCGGTATCAGAC
AGACAACCTTCTGCGTTCAAAGAAGGCAGTGGGAGATGCATCTTGGAGAC
AAGTGTTCTATCTAGGCGAAACGGCGATGGATTCAGCTGTGTTTCGATTC
AGAAAGTGGTTGGACGCCAACATTGATAGCATACCGTTCTCTGAAGCGGA
GCTGAGAGCAGCGATTACCGGAGCAAACTACAAAATGAGCGCGCGGTATA
TCAATGACCGATACGAACACCACACGAAGCACTGCGTGATTTGCAGCGCT
GCGCTGCGCAACGCACGAATAATACGGATGGTGGCTCTGTGCCTGGGGGC
GATTGTGGTGAGCGCCCTTGTGGGGAGCGCGGTAGCGGTGACAGTGGTGA
AGAGCAGTGTGAGGGCAGACTCGATGCGCGCCGTAGCGAGATGGGGCGGG
TGGCTGGTGGGGCTGTTGGTGGTGTGCGGGGCGGTGGCGATTGGGAGCGA
TAGGTCGATTCGATCGCTGACATTCACCACCAAGGCACATGACCTGCACG
AAAAGGACTGA
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