Ggra9843.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9843.t1
Unique NameGgra9843.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length118
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000170_piloncontigtig00000170_pilon:53672..54025 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9843Ggra9843Gracilaria gracilis GNS1m malegenetig00000170_pilon 53672..54025 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9843.t1.stop1Ggra9843.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000170_pilon 53672..53674 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9843.t1.CDS1Ggra9843.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000170_pilon 53672..54025 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9843.t1.exon1Ggra9843.t1.exon1Gracilaria gracilis GNS1m maleexontig00000170_pilon 53672..54025 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9843.t1.start1Ggra9843.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000170_pilon 54023..54025 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9843.t1Ggra9843.t1Gracilaria gracilis GNS1m malepolypeptidetig00000170_pilon 53672..54025 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9843.t1 ID=Ggra9843.t1|Name=Ggra9843.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=118bp
MAKSKKSPKSAGADDVEKVVIEMLRPVVPPPPRSEDERKRLRKLMIQYGK
LKRKHHIEMEIRKRDFLMAKWKAIDALPHVRRMEALYTPPDDLPMNRPLM
TDTPPIKGFNVTSMTKK*
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spliced messenger RNA

>Ggra9843.t1 ID=Ggra9843.t1|Name=Ggra9843.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=354bp|location=Sequence derived from alignment at tig00000170_pilon:53672..54025- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAAAATCCAAGAAATCACCAAAGTCCGCAGGTGCAGACGATGTAGA
GAAAGTCGTTATTGAAATGTTGCGACCGGTGGTACCGCCCCCTCCCCGAT
CCGAAGACGAAAGAAAACGTCTGCGGAAACTCATGATCCAATATGGAAAG
CTGAAGAGAAAGCATCACATCGAGATGGAAATCCGTAAACGAGACTTTCT
CATGGCGAAATGGAAGGCAATTGATGCACTGCCGCATGTGAGAAGGATGG
AAGCACTTTACACACCTCCAGACGATCTCCCCATGAACCGACCACTTATG
ACAGATACACCCCCTATCAAAGGCTTTAATGTGACATCCATGACAAAAAA
GTAG
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protein sequence of Ggra9843.t1

>Ggra9843.t1 ID=Ggra9843.t1|Name=Ggra9843.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=118bp
MAKSKKSPKSAGADDVEKVVIEMLRPVVPPPPRSEDERKRLRKLMIQYGK
LKRKHHIEMEIRKRDFLMAKWKAIDALPHVRRMEALYTPPDDLPMNRPLM
TDTPPIKGFNVTSMTKK*
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mRNA from alignment at tig00000170_pilon:53672..54025-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9843.t1 ID=Ggra9843.t1|Name=Ggra9843.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=354bp|location=Sequence derived from alignment at tig00000170_pilon:53672..54025- (Gracilaria gracilis GNS1m male)
ATGGCAAAATCCAAGAAATCACCAAAGTCCGCAGGTGCAGACGATGTAGA
GAAAGTCGTTATTGAAATGTTGCGACCGGTGGTACCGCCCCCTCCCCGAT
CCGAAGACGAAAGAAAACGTCTGCGGAAACTCATGATCCAATATGGAAAG
CTGAAGAGAAAGCATCACATCGAGATGGAAATCCGTAAACGAGACTTTCT
CATGGCGAAATGGAAGGCAATTGATGCACTGCCGCATGTGAGAAGGATGG
AAGCACTTTACACACCTCCAGACGATCTCCCCATGAACCGACCACTTATG
ACAGATACACCCCCTATCAAAGGCTTTAATGTGACATCCATGACAAAAAA
GTAG
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Coding sequence (CDS) from alignment at tig00000170_pilon:53672..54025-

>Ggra9843.t1 ID=Ggra9843.t1|Name=Ggra9843.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=354bp|location=Sequence derived from alignment at tig00000170_pilon:53672..54025- (Gracilaria gracilis GNS1m male)
ATGGCAAAATCCAAGAAATCACCAAAGTCCGCAGGTGCAGACGATGTAGA
GAAAGTCGTTATTGAAATGTTGCGACCGGTGGTACCGCCCCCTCCCCGAT
CCGAAGACGAAAGAAAACGTCTGCGGAAACTCATGATCCAATATGGAAAG
CTGAAGAGAAAGCATCACATCGAGATGGAAATCCGTAAACGAGACTTTCT
CATGGCGAAATGGAAGGCAATTGATGCACTGCCGCATGTGAGAAGGATGG
AAGCACTTTACACACCTCCAGACGATCTCCCCATGAACCGACCACTTATG
ACAGATACACCCCCTATCAAAGGCTTTAATGTGACATCCATGACAAAAAA
GTAG
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