Ggra9839.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9839.t1
Unique NameGgra9839.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length202
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000170_piloncontigtig00000170_pilon:47835..48440 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9839Ggra9839Gracilaria gracilis GNS1m malegenetig00000170_pilon 47835..48440 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9839.t1.start1Ggra9839.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000170_pilon 47835..47837 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9839.t1.CDS1Ggra9839.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000170_pilon 47835..48440 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9839.t1.exon1Ggra9839.t1.exon1Gracilaria gracilis GNS1m maleexontig00000170_pilon 47835..48440 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9839.t1.stop1Ggra9839.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000170_pilon 48438..48440 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9839.t1Ggra9839.t1Gracilaria gracilis GNS1m malepolypeptidetig00000170_pilon 47835..48440 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9839.t1 ID=Ggra9839.t1|Name=Ggra9839.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=202bp
MELPSKKQKTNNASYRHLFTFGNEAHTSPFPTHGKGHPSSQQFTFLGSSV
DLFRDSKQTSEGDVQHLRHSDGDHQMPQVAPQVAQLAIEHDSAEHEEKSR
DGVATLNDLSYPTNIEGSPSEQHEHNGYIPETEQQSYEEEEPAFQFPDDI
FSRPEALNEIAAQFVRNTAVEKLEEEWDRVDGVRDQMRRDFKIRRQKAVS
L*
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spliced messenger RNA

>Ggra9839.t1 ID=Ggra9839.t1|Name=Ggra9839.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=606bp|location=Sequence derived from alignment at tig00000170_pilon:47835..48440+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCTTCCATCGAAGAAGCAAAAGACAAACAATGCTTCATACCGTCA
TTTGTTTACCTTTGGAAACGAGGCCCACACCTCTCCTTTTCCAACTCATG
GAAAGGGACATCCTTCTTCACAACAGTTCACTTTCCTCGGAAGTTCTGTT
GACTTGTTTCGAGATTCAAAGCAAACAAGTGAGGGAGACGTCCAACATCT
GCGTCATTCTGACGGGGATCACCAAATGCCTCAAGTTGCACCACAAGTAG
CACAACTTGCAATAGAACACGATTCTGCTGAACATGAAGAAAAGAGCCGG
GATGGAGTTGCAACGTTAAACGACCTCAGTTACCCTACGAATATAGAAGG
AAGCCCAAGTGAACAACATGAGCATAATGGATATATACCCGAAACTGAGC
AACAATCCTACGAAGAAGAAGAACCGGCGTTTCAGTTTCCAGACGATATC
TTTTCTCGACCGGAAGCTCTAAACGAGATTGCCGCGCAGTTTGTGAGAAA
CACGGCAGTTGAAAAGCTGGAAGAAGAATGGGATCGCGTAGATGGCGTCC
GCGATCAAATGCGCCGAGACTTCAAGATCCGTCGTCAGAAAGCCGTCTCG
TTGTAG
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protein sequence of Ggra9839.t1

>Ggra9839.t1 ID=Ggra9839.t1|Name=Ggra9839.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=202bp
MELPSKKQKTNNASYRHLFTFGNEAHTSPFPTHGKGHPSSQQFTFLGSSV
DLFRDSKQTSEGDVQHLRHSDGDHQMPQVAPQVAQLAIEHDSAEHEEKSR
DGVATLNDLSYPTNIEGSPSEQHEHNGYIPETEQQSYEEEEPAFQFPDDI
FSRPEALNEIAAQFVRNTAVEKLEEEWDRVDGVRDQMRRDFKIRRQKAVS
L*
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mRNA from alignment at tig00000170_pilon:47835..48440+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9839.t1 ID=Ggra9839.t1|Name=Ggra9839.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=606bp|location=Sequence derived from alignment at tig00000170_pilon:47835..48440+ (Gracilaria gracilis GNS1m male)
ATGGAGCTTCCATCGAAGAAGCAAAAGACAAACAATGCTTCATACCGTCA
TTTGTTTACCTTTGGAAACGAGGCCCACACCTCTCCTTTTCCAACTCATG
GAAAGGGACATCCTTCTTCACAACAGTTCACTTTCCTCGGAAGTTCTGTT
GACTTGTTTCGAGATTCAAAGCAAACAAGTGAGGGAGACGTCCAACATCT
GCGTCATTCTGACGGGGATCACCAAATGCCTCAAGTTGCACCACAAGTAG
CACAACTTGCAATAGAACACGATTCTGCTGAACATGAAGAAAAGAGCCGG
GATGGAGTTGCAACGTTAAACGACCTCAGTTACCCTACGAATATAGAAGG
AAGCCCAAGTGAACAACATGAGCATAATGGATATATACCCGAAACTGAGC
AACAATCCTACGAAGAAGAAGAACCGGCGTTTCAGTTTCCAGACGATATC
TTTTCTCGACCGGAAGCTCTAAACGAGATTGCCGCGCAGTTTGTGAGAAA
CACGGCAGTTGAAAAGCTGGAAGAAGAATGGGATCGCGTAGATGGCGTCC
GCGATCAAATGCGCCGAGACTTCAAGATCCGTCGTCAGAAAGCCGTCTCG
TTGTAG
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Coding sequence (CDS) from alignment at tig00000170_pilon:47835..48440+

>Ggra9839.t1 ID=Ggra9839.t1|Name=Ggra9839.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=606bp|location=Sequence derived from alignment at tig00000170_pilon:47835..48440+ (Gracilaria gracilis GNS1m male)
ATGGAGCTTCCATCGAAGAAGCAAAAGACAAACAATGCTTCATACCGTCA
TTTGTTTACCTTTGGAAACGAGGCCCACACCTCTCCTTTTCCAACTCATG
GAAAGGGACATCCTTCTTCACAACAGTTCACTTTCCTCGGAAGTTCTGTT
GACTTGTTTCGAGATTCAAAGCAAACAAGTGAGGGAGACGTCCAACATCT
GCGTCATTCTGACGGGGATCACCAAATGCCTCAAGTTGCACCACAAGTAG
CACAACTTGCAATAGAACACGATTCTGCTGAACATGAAGAAAAGAGCCGG
GATGGAGTTGCAACGTTAAACGACCTCAGTTACCCTACGAATATAGAAGG
AAGCCCAAGTGAACAACATGAGCATAATGGATATATACCCGAAACTGAGC
AACAATCCTACGAAGAAGAAGAACCGGCGTTTCAGTTTCCAGACGATATC
TTTTCTCGACCGGAAGCTCTAAACGAGATTGCCGCGCAGTTTGTGAGAAA
CACGGCAGTTGAAAAGCTGGAAGAAGAATGGGATCGCGTAGATGGCGTCC
GCGATCAAATGCGCCGAGACTTCAAGATCCGTCGTCAGAAAGCCGTCTCG
TTGTAG
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