Ggra9838.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9838.t1
Unique NameGgra9838.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length434
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000170_piloncontigtig00000170_pilon:46399..47700 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog118163.Ple7327_1681
PFAMsGlyco_transf_28,UDPGT
Max annot lvl1117|Cyanobacteria
Evalue4.71e-79
EggNOG OGsCOG1819@1|root,COG1819@2|Bacteria,1G1XQ@1117|Cyanobacteria,3VKX2@52604|Pleurocapsales
DescriptionUDP-glucoronosyl and UDP-glucosyl transferase
COG categoryCG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9838Ggra9838Gracilaria gracilis GNS1m malegenetig00000170_pilon 46399..47700 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9838.t1.start1Ggra9838.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000170_pilon 46399..46401 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9838.t1.CDS1Ggra9838.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000170_pilon 46399..47700 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9838.t1.exon1Ggra9838.t1.exon1Gracilaria gracilis GNS1m maleexontig00000170_pilon 46399..47700 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9838.t1.stop1Ggra9838.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000170_pilon 47698..47700 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9838.t1Ggra9838.t1Gracilaria gracilis GNS1m malepolypeptidetig00000170_pilon 46399..47700 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9838.t1 ID=Ggra9838.t1|Name=Ggra9838.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=434bp
MTRYGCAIVPAASHVNSMLEVAFELRRRGNDIVFISILDFSEKIKALGFD
VIIIGAQRFEQGFVETFHSELGSSQGLASINKVIDMIQTTNEVYFCEAPD
LLRRAAIDLLVIDHVVISMITIADFVRIPYVLAYIALGAPYDPLVPPVFS
QRIPSDSYLSRFLTYLEHLLQNFMTRRIAAQIHAQRRAWKLPPLSNAIDA
PSARAHVIQFPRSVEFAREHLPDNVHYVGRLADPSGDEPLFGQVDFPFDR
LDGRPLIYASLGTIQTRVLAMYDTVIAACAPLAAQLVVSLGDREADMSRF
AGAAGADAVVVPFAPQERLVRMASVVVTHGGNNTATMAMSHGVPMVVMPI
ASDQPGVAARVAAAGLGQRVYGSGVSVEGVRACVRQVLEDGWYGEKCRSV
QREISEAGGVRTAADVIESALARCDGAGVNECG*
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spliced messenger RNA

>Ggra9838.t1 ID=Ggra9838.t1|Name=Ggra9838.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1302bp|location=Sequence derived from alignment at tig00000170_pilon:46399..47700+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACACGCTACGGTTGTGCAATTGTACCCGCTGCCAGCCACGTCAACAG
CATGCTAGAAGTGGCGTTCGAGTTGCGCCGGCGAGGAAACGACATCGTGT
TCATCTCCATCCTGGATTTCAGCGAGAAAATAAAGGCCCTCGGCTTCGAC
GTGATCATCATCGGCGCACAACGCTTCGAACAAGGCTTTGTCGAAACGTT
CCACTCCGAGCTGGGCAGCTCACAGGGCCTGGCGTCAATAAACAAAGTCA
TCGACATGATCCAAACAACAAACGAGGTGTACTTTTGCGAGGCGCCCGAC
CTGCTACGCCGCGCCGCGATCGATCTACTGGTGATCGATCACGTGGTAAT
CTCAATGATCACCATCGCCGACTTTGTGCGCATCCCCTACGTGCTGGCGT
ACATCGCGCTGGGCGCACCATACGACCCGCTCGTGCCGCCCGTGTTCTCA
CAACGCATCCCGTCAGACAGCTACCTCTCCCGCTTCCTCACCTATCTCGA
GCACCTTCTACAAAACTTCATGACGCGCAGAATAGCCGCGCAAATCCACG
CGCAGCGCCGCGCCTGGAAGCTACCGCCCCTTTCCAACGCCATCGACGCG
CCCTCCGCGCGTGCGCACGTCATCCAGTTCCCGCGGTCTGTCGAGTTTGC
GCGCGAGCACCTGCCCGACAACGTGCACTACGTCGGGCGGCTGGCCGACC
CGTCCGGCGACGAGCCGCTGTTCGGGCAGGTGGACTTCCCGTTCGATCGG
CTGGACGGGCGGCCGCTCATCTACGCGTCGCTGGGCACGATTCAGACGCG
CGTGCTCGCGATGTACGACACGGTGATCGCGGCGTGCGCACCGCTGGCCG
CGCAGCTGGTGGTGTCGCTGGGCGACAGAGAGGCTGATATGAGCCGGTTC
GCGGGGGCGGCGGGCGCGGACGCGGTGGTGGTGCCCTTCGCGCCGCAGGA
GCGGTTGGTGCGGATGGCCAGCGTGGTGGTGACGCATGGCGGCAATAACA
CGGCGACGATGGCCATGTCGCACGGCGTCCCCATGGTGGTGATGCCCATC
GCGAGCGATCAGCCGGGCGTGGCGGCGCGCGTGGCGGCGGCTGGGCTGGG
GCAGCGCGTGTATGGGAGCGGGGTGAGCGTTGAGGGTGTGCGCGCGTGTG
TGAGGCAGGTGTTGGAGGATGGCTGGTATGGAGAAAAGTGTCGAAGTGTG
CAACGGGAAATCAGCGAGGCGGGCGGCGTGCGGACGGCGGCTGACGTGAT
TGAGAGCGCTCTAGCTAGATGCGACGGCGCCGGCGTGAATGAATGCGGGT
GA
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protein sequence of Ggra9838.t1

>Ggra9838.t1 ID=Ggra9838.t1|Name=Ggra9838.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=434bp
MTRYGCAIVPAASHVNSMLEVAFELRRRGNDIVFISILDFSEKIKALGFD
VIIIGAQRFEQGFVETFHSELGSSQGLASINKVIDMIQTTNEVYFCEAPD
LLRRAAIDLLVIDHVVISMITIADFVRIPYVLAYIALGAPYDPLVPPVFS
QRIPSDSYLSRFLTYLEHLLQNFMTRRIAAQIHAQRRAWKLPPLSNAIDA
PSARAHVIQFPRSVEFAREHLPDNVHYVGRLADPSGDEPLFGQVDFPFDR
LDGRPLIYASLGTIQTRVLAMYDTVIAACAPLAAQLVVSLGDREADMSRF
AGAAGADAVVVPFAPQERLVRMASVVVTHGGNNTATMAMSHGVPMVVMPI
ASDQPGVAARVAAAGLGQRVYGSGVSVEGVRACVRQVLEDGWYGEKCRSV
QREISEAGGVRTAADVIESALARCDGAGVNECG*
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mRNA from alignment at tig00000170_pilon:46399..47700+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9838.t1 ID=Ggra9838.t1|Name=Ggra9838.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1302bp|location=Sequence derived from alignment at tig00000170_pilon:46399..47700+ (Gracilaria gracilis GNS1m male)
ATGACACGCTACGGTTGTGCAATTGTACCCGCTGCCAGCCACGTCAACAG
CATGCTAGAAGTGGCGTTCGAGTTGCGCCGGCGAGGAAACGACATCGTGT
TCATCTCCATCCTGGATTTCAGCGAGAAAATAAAGGCCCTCGGCTTCGAC
GTGATCATCATCGGCGCACAACGCTTCGAACAAGGCTTTGTCGAAACGTT
CCACTCCGAGCTGGGCAGCTCACAGGGCCTGGCGTCAATAAACAAAGTCA
TCGACATGATCCAAACAACAAACGAGGTGTACTTTTGCGAGGCGCCCGAC
CTGCTACGCCGCGCCGCGATCGATCTACTGGTGATCGATCACGTGGTAAT
CTCAATGATCACCATCGCCGACTTTGTGCGCATCCCCTACGTGCTGGCGT
ACATCGCGCTGGGCGCACCATACGACCCGCTCGTGCCGCCCGTGTTCTCA
CAACGCATCCCGTCAGACAGCTACCTCTCCCGCTTCCTCACCTATCTCGA
GCACCTTCTACAAAACTTCATGACGCGCAGAATAGCCGCGCAAATCCACG
CGCAGCGCCGCGCCTGGAAGCTACCGCCCCTTTCCAACGCCATCGACGCG
CCCTCCGCGCGTGCGCACGTCATCCAGTTCCCGCGGTCTGTCGAGTTTGC
GCGCGAGCACCTGCCCGACAACGTGCACTACGTCGGGCGGCTGGCCGACC
CGTCCGGCGACGAGCCGCTGTTCGGGCAGGTGGACTTCCCGTTCGATCGG
CTGGACGGGCGGCCGCTCATCTACGCGTCGCTGGGCACGATTCAGACGCG
CGTGCTCGCGATGTACGACACGGTGATCGCGGCGTGCGCACCGCTGGCCG
CGCAGCTGGTGGTGTCGCTGGGCGACAGAGAGGCTGATATGAGCCGGTTC
GCGGGGGCGGCGGGCGCGGACGCGGTGGTGGTGCCCTTCGCGCCGCAGGA
GCGGTTGGTGCGGATGGCCAGCGTGGTGGTGACGCATGGCGGCAATAACA
CGGCGACGATGGCCATGTCGCACGGCGTCCCCATGGTGGTGATGCCCATC
GCGAGCGATCAGCCGGGCGTGGCGGCGCGCGTGGCGGCGGCTGGGCTGGG
GCAGCGCGTGTATGGGAGCGGGGTGAGCGTTGAGGGTGTGCGCGCGTGTG
TGAGGCAGGTGTTGGAGGATGGCTGGTATGGAGAAAAGTGTCGAAGTGTG
CAACGGGAAATCAGCGAGGCGGGCGGCGTGCGGACGGCGGCTGACGTGAT
TGAGAGCGCTCTAGCTAGATGCGACGGCGCCGGCGTGAATGAATGCGGGT
GA
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Coding sequence (CDS) from alignment at tig00000170_pilon:46399..47700+

>Ggra9838.t1 ID=Ggra9838.t1|Name=Ggra9838.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1302bp|location=Sequence derived from alignment at tig00000170_pilon:46399..47700+ (Gracilaria gracilis GNS1m male)
ATGACACGCTACGGTTGTGCAATTGTACCCGCTGCCAGCCACGTCAACAG
CATGCTAGAAGTGGCGTTCGAGTTGCGCCGGCGAGGAAACGACATCGTGT
TCATCTCCATCCTGGATTTCAGCGAGAAAATAAAGGCCCTCGGCTTCGAC
GTGATCATCATCGGCGCACAACGCTTCGAACAAGGCTTTGTCGAAACGTT
CCACTCCGAGCTGGGCAGCTCACAGGGCCTGGCGTCAATAAACAAAGTCA
TCGACATGATCCAAACAACAAACGAGGTGTACTTTTGCGAGGCGCCCGAC
CTGCTACGCCGCGCCGCGATCGATCTACTGGTGATCGATCACGTGGTAAT
CTCAATGATCACCATCGCCGACTTTGTGCGCATCCCCTACGTGCTGGCGT
ACATCGCGCTGGGCGCACCATACGACCCGCTCGTGCCGCCCGTGTTCTCA
CAACGCATCCCGTCAGACAGCTACCTCTCCCGCTTCCTCACCTATCTCGA
GCACCTTCTACAAAACTTCATGACGCGCAGAATAGCCGCGCAAATCCACG
CGCAGCGCCGCGCCTGGAAGCTACCGCCCCTTTCCAACGCCATCGACGCG
CCCTCCGCGCGTGCGCACGTCATCCAGTTCCCGCGGTCTGTCGAGTTTGC
GCGCGAGCACCTGCCCGACAACGTGCACTACGTCGGGCGGCTGGCCGACC
CGTCCGGCGACGAGCCGCTGTTCGGGCAGGTGGACTTCCCGTTCGATCGG
CTGGACGGGCGGCCGCTCATCTACGCGTCGCTGGGCACGATTCAGACGCG
CGTGCTCGCGATGTACGACACGGTGATCGCGGCGTGCGCACCGCTGGCCG
CGCAGCTGGTGGTGTCGCTGGGCGACAGAGAGGCTGATATGAGCCGGTTC
GCGGGGGCGGCGGGCGCGGACGCGGTGGTGGTGCCCTTCGCGCCGCAGGA
GCGGTTGGTGCGGATGGCCAGCGTGGTGGTGACGCATGGCGGCAATAACA
CGGCGACGATGGCCATGTCGCACGGCGTCCCCATGGTGGTGATGCCCATC
GCGAGCGATCAGCCGGGCGTGGCGGCGCGCGTGGCGGCGGCTGGGCTGGG
GCAGCGCGTGTATGGGAGCGGGGTGAGCGTTGAGGGTGTGCGCGCGTGTG
TGAGGCAGGTGTTGGAGGATGGCTGGTATGGAGAAAAGTGTCGAAGTGTG
CAACGGGAAATCAGCGAGGCGGGCGGCGTGCGGACGGCGGCTGACGTGAT
TGAGAGCGCTCTAGCTAGATGCGACGGCGCCGGCGTGAATGAATGCGGGT
GA
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