Ggra983.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra983.t1
Unique NameGgra983.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length366
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000027_piloncontigtig00000027_pilon:56100..57197 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7994.ENSAMXP00000018196
Preferred nameLDHB
PFAMsLdh_1_C,Ldh_1_N
Max annot lvl33208|Metazoa
KEGG rclassRC00031,RC00044
KEGG koko:K00016
KEGG ReactionR00703,R01000,R03104
KEGG Pathwayko00010,ko00270,ko00620,ko00640,ko01100,ko01110,ko01120,ko01130,ko04922,map00010,map00270,map00620,map00640,map01100,map01110,map01120,map01130,map04922
GOsGO:0000166,GO:0000768,GO:0003674,GO:0003824,GO:0004457,GO:0004459,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006089,GO:0006090,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006949,GO:0007520,GO:0007525,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009653,GO:0009987,GO:0014902,GO:0016020,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019244,GO:0019249,GO:0019362,GO:0019637,GO:0019674,GO:0019752,GO:0019899,GO:0019900,GO:0030154,GO:0032502,GO:0032787,GO:0034641,GO:0036094,GO:0042692,GO:0042802,GO:0043209,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0045121,GO:0046394,GO:0046483,GO:0046496,GO:0048037,GO:0048646,GO:0048856,GO:0048869,GO:0050662,GO:0051146,GO:0051186,GO:0051287,GO:0055086,GO:0055114,GO:0061061,GO:0071704,GO:0072330,GO:0072524,GO:0097159,GO:0098589,GO:0098805,GO:0098857,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901576,GO:1901615,GO:1901617
Evalue9.87e-35
EggNOG OGsCOG0039@1|root,KOG1495@2759|Eukaryota,38G9C@33154|Opisthokonta,3BGT7@33208|Metazoa,3CW73@33213|Bilateria,484IM@7711|Chordata,493KD@7742|Vertebrata,4A1M6@7898|Actinopterygii
EC1.1.1.27
DescriptionBelongs to the LDH MDH superfamily
COG categoryC
BRITEko00000,ko00001,ko01000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra983Ggra983Gracilaria gracilis GNS1m malegenetig00000027_pilon 56100..57197 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra983.t1.start1Ggra983.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000027_pilon 56100..56102 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra983.t1.CDS1Ggra983.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000027_pilon 56100..57197 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra983.t1.exon1Ggra983.t1.exon1Gracilaria gracilis GNS1m maleexontig00000027_pilon 56100..57197 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra983.t1.stop1Ggra983.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000027_pilon 57195..57197 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra983.t1Ggra983.t1Gracilaria gracilis GNS1m malepolypeptidetig00000027_pilon 56100..57197 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra983.t1 ID=Ggra983.t1|Name=Ggra983.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=366bp
MSVFPAAARAAADSTQRRVSLIGLSEIGRAFALSLVARNCATHLTLVDKH
YHRAKGEALDLQDALPFLPDIHLSHSSDIRATAHSDVIVIAVGRAFGKGF
SSRLELIAHNTHRVAQAAFAAAAASPAAVLLVGTDPVEVMTYVAAKAAAL
ARPQLPEGYRVLGVGTALDVARMRVAIARRADVHAADVEVNIVGGHGDQL
VPLWRYCRVRGMALAHVCAELSQRAERDALTEEVRQASFRITEGKPEGSS
GGTGECLADLTQSLLTGVGNVRTVCTRVTTQQIAALPRPVYMSVPCKIDA
GGVAGIFPFEVDAEERQRLLDAASELADAQRRADAQLAELQPYHGVVSVA
LPNASLRSMGSLPMT*
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spliced messenger RNA

>Ggra983.t1 ID=Ggra983.t1|Name=Ggra983.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1098bp|location=Sequence derived from alignment at tig00000027_pilon:56100..57197+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGTGTTCCccgccgccgcgcgcgccgccgcggacagcacgcagcg
ccgcGTGTCACTGATCGGGCTGTCCGAGATAGGGCGCGCCTTCGCGCTGT
CGCTGGTGGCGCGAAACTGCGCCACGCACCTCACGCTGGTAGACAAGCAC
TACCACCGCGCAAAGGGCGAGGCGCTAGACCTGCAAGACGCGCTACCCTT
CCTGCCGGACATCCACCTGTCGCACTCGTCCGACATCCGCGCCACCGCGC
ACTCGGACGTGATCGTCATCGCCGTGGGCCGCGCCTTTGGTAAGGGGTTC
AGCTCGCGCCTGGAGCTCATCGCGCACAACACGCACCGCGTGGCGCAGGC
GGCGTTCGCCGCGGCGGCCGCGTCGCCCGCCGCCGTGCTGCTGGTCGGCA
CGGACCCGGTGGAGGTGATGACGTACGTGGCGGCCAAGGCGGCGGCGCTG
GCGCGCCCGCAGCTACCCGAGGGCTACCGCGTGCTGGGCGTGGGCACGgc
gctggacgttgcgcgcatgcgcgtggcgattgcgcgccgcgcCGACGTGC
ACGCCGCGGACGTGGAGGTGAACATTGTGGGCGGGCACGGCGACCAGCTG
GTGCCGCTGTGGCGCTACTGCCGCGTGCGCGGCATGGCGCTGGCGCACGT
TTGCGCCGAGCTGTCGCAGCGCGCCGAGCGCGACGCGCTCACGGAGGAGG
TGCGACAGGCGTCGTTCCGCATCACGGAGGGCAAGCCGGAGGGCTCCAGC
GGCGGCACCGGCGAGTGTCTGGCCGACCTCACGCAGTCGCTGCTCACCGG
CGTCGGCAACGTGCGCACCGTGTGTACGCGCGTCACTACGCAGCAAATCG
CCGCGCTGCCGCGGCCGGTGTACATGTCCGTGCCGTGCAAGATCGACGCG
GGCGGCGTGGCGGGCATCTTCCCGTTCGAGGTGGACGCCGAGGAGCGACA
GCGCCTCTTGGACGCCGCAAGCGAGCTGGCGGACGCGCAGCGGCGCGCAG
ACGCGCAGCTGGCGGAGCTGCAGCCATACCACGGCGTGGTGTCGGTGGCG
TTGCCCAACGCTTCGCTGCGCAGCATGGGCTCGTTGCCCATGACGTGA
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protein sequence of Ggra983.t1

>Ggra983.t1 ID=Ggra983.t1|Name=Ggra983.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=366bp
MSVFPAAARAAADSTQRRVSLIGLSEIGRAFALSLVARNCATHLTLVDKH
YHRAKGEALDLQDALPFLPDIHLSHSSDIRATAHSDVIVIAVGRAFGKGF
SSRLELIAHNTHRVAQAAFAAAAASPAAVLLVGTDPVEVMTYVAAKAAAL
ARPQLPEGYRVLGVGTALDVARMRVAIARRADVHAADVEVNIVGGHGDQL
VPLWRYCRVRGMALAHVCAELSQRAERDALTEEVRQASFRITEGKPEGSS
GGTGECLADLTQSLLTGVGNVRTVCTRVTTQQIAALPRPVYMSVPCKIDA
GGVAGIFPFEVDAEERQRLLDAASELADAQRRADAQLAELQPYHGVVSVA
LPNASLRSMGSLPMT*
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mRNA from alignment at tig00000027_pilon:56100..57197+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra983.t1 ID=Ggra983.t1|Name=Ggra983.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1098bp|location=Sequence derived from alignment at tig00000027_pilon:56100..57197+ (Gracilaria gracilis GNS1m male)
ATGTCCGTGTTCCccgccgccgcgcgcgccgccgcggacagcacgcagcg
ccgcGTGTCACTGATCGGGCTGTCCGAGATAGGGCGCGCCTTCGCGCTGT
CGCTGGTGGCGCGAAACTGCGCCACGCACCTCACGCTGGTAGACAAGCAC
TACCACCGCGCAAAGGGCGAGGCGCTAGACCTGCAAGACGCGCTACCCTT
CCTGCCGGACATCCACCTGTCGCACTCGTCCGACATCCGCGCCACCGCGC
ACTCGGACGTGATCGTCATCGCCGTGGGCCGCGCCTTTGGTAAGGGGTTC
AGCTCGCGCCTGGAGCTCATCGCGCACAACACGCACCGCGTGGCGCAGGC
GGCGTTCGCCGCGGCGGCCGCGTCGCCCGCCGCCGTGCTGCTGGTCGGCA
CGGACCCGGTGGAGGTGATGACGTACGTGGCGGCCAAGGCGGCGGCGCTG
GCGCGCCCGCAGCTACCCGAGGGCTACCGCGTGCTGGGCGTGGGCACGgc
gctggacgttgcgcgcatgcgcgtggcgattgcgcgccgcgcCGACGTGC
ACGCCGCGGACGTGGAGGTGAACATTGTGGGCGGGCACGGCGACCAGCTG
GTGCCGCTGTGGCGCTACTGCCGCGTGCGCGGCATGGCGCTGGCGCACGT
TTGCGCCGAGCTGTCGCAGCGCGCCGAGCGCGACGCGCTCACGGAGGAGG
TGCGACAGGCGTCGTTCCGCATCACGGAGGGCAAGCCGGAGGGCTCCAGC
GGCGGCACCGGCGAGTGTCTGGCCGACCTCACGCAGTCGCTGCTCACCGG
CGTCGGCAACGTGCGCACCGTGTGTACGCGCGTCACTACGCAGCAAATCG
CCGCGCTGCCGCGGCCGGTGTACATGTCCGTGCCGTGCAAGATCGACGCG
GGCGGCGTGGCGGGCATCTTCCCGTTCGAGGTGGACGCCGAGGAGCGACA
GCGCCTCTTGGACGCCGCAAGCGAGCTGGCGGACGCGCAGCGGCGCGCAG
ACGCGCAGCTGGCGGAGCTGCAGCCATACCACGGCGTGGTGTCGGTGGCG
TTGCCCAACGCTTCGCTGCGCAGCATGGGCTCGTTGCCCATGACGTGA
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Coding sequence (CDS) from alignment at tig00000027_pilon:56100..57197+

>Ggra983.t1 ID=Ggra983.t1|Name=Ggra983.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1098bp|location=Sequence derived from alignment at tig00000027_pilon:56100..57197+ (Gracilaria gracilis GNS1m male)
ATGTCCGTGTTCCccgccgccgcgcgcgccgccgcggacagcacgcagcg
ccgcGTGTCACTGATCGGGCTGTCCGAGATAGGGCGCGCCTTCGCGCTGT
CGCTGGTGGCGCGAAACTGCGCCACGCACCTCACGCTGGTAGACAAGCAC
TACCACCGCGCAAAGGGCGAGGCGCTAGACCTGCAAGACGCGCTACCCTT
CCTGCCGGACATCCACCTGTCGCACTCGTCCGACATCCGCGCCACCGCGC
ACTCGGACGTGATCGTCATCGCCGTGGGCCGCGCCTTTGGTAAGGGGTTC
AGCTCGCGCCTGGAGCTCATCGCGCACAACACGCACCGCGTGGCGCAGGC
GGCGTTCGCCGCGGCGGCCGCGTCGCCCGCCGCCGTGCTGCTGGTCGGCA
CGGACCCGGTGGAGGTGATGACGTACGTGGCGGCCAAGGCGGCGGCGCTG
GCGCGCCCGCAGCTACCCGAGGGCTACCGCGTGCTGGGCGTGGGCACGgc
gctggacgttgcgcgcatgcgcgtggcgattgcgcgccgcgcCGACGTGC
ACGCCGCGGACGTGGAGGTGAACATTGTGGGCGGGCACGGCGACCAGCTG
GTGCCGCTGTGGCGCTACTGCCGCGTGCGCGGCATGGCGCTGGCGCACGT
TTGCGCCGAGCTGTCGCAGCGCGCCGAGCGCGACGCGCTCACGGAGGAGG
TGCGACAGGCGTCGTTCCGCATCACGGAGGGCAAGCCGGAGGGCTCCAGC
GGCGGCACCGGCGAGTGTCTGGCCGACCTCACGCAGTCGCTGCTCACCGG
CGTCGGCAACGTGCGCACCGTGTGTACGCGCGTCACTACGCAGCAAATCG
CCGCGCTGCCGCGGCCGGTGTACATGTCCGTGCCGTGCAAGATCGACGCG
GGCGGCGTGGCGGGCATCTTCCCGTTCGAGGTGGACGCCGAGGAGCGACA
GCGCCTCTTGGACGCCGCAAGCGAGCTGGCGGACGCGCAGCGGCGCGCAG
ACGCGCAGCTGGCGGAGCTGCAGCCATACCACGGCGTGGTGTCGGTGGCG
TTGCCCAACGCTTCGCTGCGCAGCATGGGCTCGTTGCCCATGACGTGA
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