Ggra9824.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9824.t1
Unique NameGgra9824.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length401
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000160_piloncontigtig00000160_pilon:53346..54548 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9824Ggra9824Gracilaria gracilis GNS1m malegenetig00000160_pilon 53346..54548 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9824.t1.stop1Ggra9824.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000160_pilon 53346..53348 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9824.t1.CDS1Ggra9824.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000160_pilon 53346..54548 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9824.t1.exon1Ggra9824.t1.exon1Gracilaria gracilis GNS1m maleexontig00000160_pilon 53346..54548 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9824.t1.start1Ggra9824.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000160_pilon 54546..54548 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9824.t1Ggra9824.t1Gracilaria gracilis GNS1m malepolypeptidetig00000160_pilon 53346..54548 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9824.t1 ID=Ggra9824.t1|Name=Ggra9824.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=401bp
MPHPPVYASNGVVIRAHSSSLRAAAYDSHHRRLATVATYPLLLPNHGRIL
TTVASAPSPRLPPPSPFRCLRLSTLAPTTVTANVYIVSLQPPLPPPPSFY
RRFNHRCRHRLSNVSPIIIAAELPSPLPPLSHRRLATVPSTPNSYRPRST
ATLHLHCRNRCTTAPPLPCYRRNTATASPTLQYCRTIAATAQLHWHYCRT
IFMTIATAALLIRPPHLRITATAQLHWHCCRTISKTIATAALLIRPLYLR
ITATAATPLSPPSLHHRHTKGTTAVPLHYHHNLSTVVSVRPPVTPGKGQR
PTTARPLQSHRHRRASITAEHPSPPSIRHCRASVTAEHLSPPRLHQLYNP
ATAPSPPQHRHNTATAEMPLTWPTATAEPLPLNHDHKAAVTTKRAQTLRE
*
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spliced messenger RNA

>Ggra9824.t1 ID=Ggra9824.t1|Name=Ggra9824.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1203bp|location=Sequence derived from alignment at tig00000160_pilon:53346..54548- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTCACCCACCTGTCTACGCATCCAATGGTGTGGTAATTCGAGCGCA
CTCGTCGTCGCTGCGAGCGGCCGCTTATGACAGCCACCATCGCCGCTTAG
CCACCGTAGCGACCTATCCACTGCTGTTGCCTAACCACGGCCGCATCCTA
ACTACCGTTGCATCCGCCCCCTCTCCACGATTACCGCCGCCGAGCCCCTT
TCGTTGCCTCCGTTTATCTACCCTTGCTCCGACCACCGTCACGGCCAACG
TCTATATAGTGTCGCTCCAGCCACCGTTGCCGCCGCCACCGTCTTTTTAC
CGTCGCTTCAACCACCGTTGCCGCCACCGCCTATCAAACGTCTCTCCGAT
TATCATCGCCGCCGAGCTACCGTCGCCGCTACCACCACTCAGCCACCGCC
GTCTAGCCACCGTCCCATCAACTCCAAACTCCTATCGCCCTCGCTCCACG
GCCACACTACACCTCCATTGCCGAAACCGCTGTACTACCGCCCCGCCACT
GCCATGCTACCGCCGCAACACTGCCACCGCCTCGCCAACTCTACAATACT
GTCGCACTATCGCCGCCACCGCCCAATTACATTGGCACTACTGCCGCACT
ATTTTCATGACCATCGCCACTGCCGCACTACTAATACGACCGCCCCACCT
CCGCATTACCGCCACCGCCCAATTACATTGGCACTGCTGCCGCACTATTT
CCAAGACCATCGCCACTGCCGCACTACTAATACGCCCGCTCTACCTCCGC
ATTACCGCCACCGCCGCAACACCTCTATCCCCGCCATCGCTGCACCACCG
CCACACCAAAGGCACGACAGCAGTACCTCTGCACTACCATCACAACCTCA
GCACCGTCGTCTCCGTCAGGCCTCCGGTAACGCCTGGTAAAGGCCAACGC
CCAACCACCGCCAGGCCACTACAAAGTCACCGTCACCGCCGAGCATCCAT
CACCGCCGAGCACCCGTCACCGCCGAGCATCCGTCACTGCCGAGCATCCG
TCACCGCCGAGCATCTCTCACCGCCGAGACTCCACCAACTTTACAACCCC
GCCACAGCTCCATCGCCGCCACAACACCGCCACAACACCGCCACCGCCGA
AATGCCGTTAACGTGGCCCACCGCTACTGCCGAACCGCTGCCACTGAACC
ACGACCACAAAGCCGCCGTCACCACCAAACGTGCTCAAACGCTTCGGGAG
TGA
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protein sequence of Ggra9824.t1

>Ggra9824.t1 ID=Ggra9824.t1|Name=Ggra9824.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=401bp
MPHPPVYASNGVVIRAHSSSLRAAAYDSHHRRLATVATYPLLLPNHGRIL
TTVASAPSPRLPPPSPFRCLRLSTLAPTTVTANVYIVSLQPPLPPPPSFY
RRFNHRCRHRLSNVSPIIIAAELPSPLPPLSHRRLATVPSTPNSYRPRST
ATLHLHCRNRCTTAPPLPCYRRNTATASPTLQYCRTIAATAQLHWHYCRT
IFMTIATAALLIRPPHLRITATAQLHWHCCRTISKTIATAALLIRPLYLR
ITATAATPLSPPSLHHRHTKGTTAVPLHYHHNLSTVVSVRPPVTPGKGQR
PTTARPLQSHRHRRASITAEHPSPPSIRHCRASVTAEHLSPPRLHQLYNP
ATAPSPPQHRHNTATAEMPLTWPTATAEPLPLNHDHKAAVTTKRAQTLRE
*
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mRNA from alignment at tig00000160_pilon:53346..54548-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9824.t1 ID=Ggra9824.t1|Name=Ggra9824.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1203bp|location=Sequence derived from alignment at tig00000160_pilon:53346..54548- (Gracilaria gracilis GNS1m male)
ATGCCTCACCCACCTGTCTACGCATCCAATGGTGTGGTAATTCGAGCGCA
CTCGTCGTCGCTGCGAGCGGCCGCTTATGACAGCCACCATCGCCGCTTAG
CCACCGTAGCGACCTATCCACTGCTGTTGCCTAACCACGGCCGCATCCTA
ACTACCGTTGCATCCGCCCCCTCTCCACGATTACCGCCGCCGAGCCCCTT
TCGTTGCCTCCGTTTATCTACCCTTGCTCCGACCACCGTCACGGCCAACG
TCTATATAGTGTCGCTCCAGCCACCGTTGCCGCCGCCACCGTCTTTTTAC
CGTCGCTTCAACCACCGTTGCCGCCACCGCCTATCAAACGTCTCTCCGAT
TATCATCGCCGCCGAGCTACCGTCGCCGCTACCACCACTCAGCCACCGCC
GTCTAGCCACCGTCCCATCAACTCCAAACTCCTATCGCCCTCGCTCCACG
GCCACACTACACCTCCATTGCCGAAACCGCTGTACTACCGCCCCGCCACT
GCCATGCTACCGCCGCAACACTGCCACCGCCTCGCCAACTCTACAATACT
GTCGCACTATCGCCGCCACCGCCCAATTACATTGGCACTACTGCCGCACT
ATTTTCATGACCATCGCCACTGCCGCACTACTAATACGACCGCCCCACCT
CCGCATTACCGCCACCGCCCAATTACATTGGCACTGCTGCCGCACTATTT
CCAAGACCATCGCCACTGCCGCACTACTAATACGCCCGCTCTACCTCCGC
ATTACCGCCACCGCCGCAACACCTCTATCCCCGCCATCGCTGCACCACCG
CCACACCAAAGGCACGACAGCAGTACCTCTGCACTACCATCACAACCTCA
GCACCGTCGTCTCCGTCAGGCCTCCGGTAACGCCTGGTAAAGGCCAACGC
CCAACCACCGCCAGGCCACTACAAAGTCACCGTCACCGCCGAGCATCCAT
CACCGCCGAGCACCCGTCACCGCCGAGCATCCGTCACTGCCGAGCATCCG
TCACCGCCGAGCATCTCTCACCGCCGAGACTCCACCAACTTTACAACCCC
GCCACAGCTCCATCGCCGCCACAACACCGCCACAACACCGCCACCGCCGA
AATGCCGTTAACGTGGCCCACCGCTACTGCCGAACCGCTGCCACTGAACC
ACGACCACAAAGCCGCCGTCACCACCAAACGTGCTCAAACGCTTCGGGAG
TGA
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Coding sequence (CDS) from alignment at tig00000160_pilon:53346..54548-

>Ggra9824.t1 ID=Ggra9824.t1|Name=Ggra9824.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1203bp|location=Sequence derived from alignment at tig00000160_pilon:53346..54548- (Gracilaria gracilis GNS1m male)
ATGCCTCACCCACCTGTCTACGCATCCAATGGTGTGGTAATTCGAGCGCA
CTCGTCGTCGCTGCGAGCGGCCGCTTATGACAGCCACCATCGCCGCTTAG
CCACCGTAGCGACCTATCCACTGCTGTTGCCTAACCACGGCCGCATCCTA
ACTACCGTTGCATCCGCCCCCTCTCCACGATTACCGCCGCCGAGCCCCTT
TCGTTGCCTCCGTTTATCTACCCTTGCTCCGACCACCGTCACGGCCAACG
TCTATATAGTGTCGCTCCAGCCACCGTTGCCGCCGCCACCGTCTTTTTAC
CGTCGCTTCAACCACCGTTGCCGCCACCGCCTATCAAACGTCTCTCCGAT
TATCATCGCCGCCGAGCTACCGTCGCCGCTACCACCACTCAGCCACCGCC
GTCTAGCCACCGTCCCATCAACTCCAAACTCCTATCGCCCTCGCTCCACG
GCCACACTACACCTCCATTGCCGAAACCGCTGTACTACCGCCCCGCCACT
GCCATGCTACCGCCGCAACACTGCCACCGCCTCGCCAACTCTACAATACT
GTCGCACTATCGCCGCCACCGCCCAATTACATTGGCACTACTGCCGCACT
ATTTTCATGACCATCGCCACTGCCGCACTACTAATACGACCGCCCCACCT
CCGCATTACCGCCACCGCCCAATTACATTGGCACTGCTGCCGCACTATTT
CCAAGACCATCGCCACTGCCGCACTACTAATACGCCCGCTCTACCTCCGC
ATTACCGCCACCGCCGCAACACCTCTATCCCCGCCATCGCTGCACCACCG
CCACACCAAAGGCACGACAGCAGTACCTCTGCACTACCATCACAACCTCA
GCACCGTCGTCTCCGTCAGGCCTCCGGTAACGCCTGGTAAAGGCCAACGC
CCAACCACCGCCAGGCCACTACAAAGTCACCGTCACCGCCGAGCATCCAT
CACCGCCGAGCACCCGTCACCGCCGAGCATCCGTCACTGCCGAGCATCCG
TCACCGCCGAGCATCTCTCACCGCCGAGACTCCACCAACTTTACAACCCC
GCCACAGCTCCATCGCCGCCACAACACCGCCACAACACCGCCACCGCCGA
AATGCCGTTAACGTGGCCCACCGCTACTGCCGAACCGCTGCCACTGAACC
ACGACCACAAAGCCGCCGTCACCACCAAACGTGCTCAAACGCTTCGGGAG
TGA
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