Ggra9821.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9821.t1
Unique NameGgra9821.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length173
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000160_piloncontigtig00000160_pilon:30049..30567 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9821Ggra9821Gracilaria gracilis GNS1m malegenetig00000160_pilon 30049..30567 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9821.t1.stop1Ggra9821.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000160_pilon 30049..30051 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9821.t1.CDS1Ggra9821.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000160_pilon 30049..30567 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9821.t1.exon1Ggra9821.t1.exon1Gracilaria gracilis GNS1m maleexontig00000160_pilon 30049..30567 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9821.t1.start1Ggra9821.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000160_pilon 30565..30567 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9821.t1Ggra9821.t1Gracilaria gracilis GNS1m malepolypeptidetig00000160_pilon 30049..30567 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9821.t1 ID=Ggra9821.t1|Name=Ggra9821.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=173bp
MIFSLPFLTKPDVISLPQHDKNPEERRKEIEENRELYQWTHEAIADASMI
AGLPSKENPEFGWVEGLIKVILRVNANGIAIRVDQFQEDGAELRRQLFSR
VSSFATGIISKLLSGAFDRQAAKDSAVELEELVSMHVEGVGNSLNEYKDM
FKVFKPDIFATLDQFLRDDVFE*
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spliced messenger RNA

>Ggra9821.t1 ID=Ggra9821.t1|Name=Ggra9821.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=519bp|location=Sequence derived from alignment at tig00000160_pilon:30049..30567- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTTTCTCTCTCCCATTCCTCACCAAACCGGATGTCATATCCCTCCC
GCAACATGATAAGAACCCGGAAGAACGTCGAAAGGAAATCGAAGAGAATC
GCGAGCTTTACCAGTGGACGCACGAAGCCATTGCTGATGCCTCCATGATT
GCGGGTCTCCCCAGCAAGGAGAACCCGGAGTTTGGCTGGGTCGAAGGACT
TATCAAAGTCATCTTGCGTGTCAACGCCAATGGTATTGCCATCCGTGTCG
ATCAATTCCAGGAAGACGGTGCCGAGCTGCGCCGTCAGCTCTTCTCGCGC
GTGTCTTCCTTCGCCACCGGTATCATTTCCAAGCTTTTGTCAGGCGCGTT
TGATCGTCAAGCTGCCAAGGACTCAGCCGTAGAACTTGAAGAACTGGTCA
GCATGCACGTCGAGGGTGTTGGTAACTCTCTCAACGAGTACAAGGATATG
TTCAAGGTTTTCAAACCGGATATTTTTGCCACTCTGGACCAGTTCCTTCG
CGACGATGTGTTCGAATGA
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protein sequence of Ggra9821.t1

>Ggra9821.t1 ID=Ggra9821.t1|Name=Ggra9821.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=173bp
MIFSLPFLTKPDVISLPQHDKNPEERRKEIEENRELYQWTHEAIADASMI
AGLPSKENPEFGWVEGLIKVILRVNANGIAIRVDQFQEDGAELRRQLFSR
VSSFATGIISKLLSGAFDRQAAKDSAVELEELVSMHVEGVGNSLNEYKDM
FKVFKPDIFATLDQFLRDDVFE*
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mRNA from alignment at tig00000160_pilon:30049..30567-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9821.t1 ID=Ggra9821.t1|Name=Ggra9821.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=519bp|location=Sequence derived from alignment at tig00000160_pilon:30049..30567- (Gracilaria gracilis GNS1m male)
ATGATTTTCTCTCTCCCATTCCTCACCAAACCGGATGTCATATCCCTCCC
GCAACATGATAAGAACCCGGAAGAACGTCGAAAGGAAATCGAAGAGAATC
GCGAGCTTTACCAGTGGACGCACGAAGCCATTGCTGATGCCTCCATGATT
GCGGGTCTCCCCAGCAAGGAGAACCCGGAGTTTGGCTGGGTCGAAGGACT
TATCAAAGTCATCTTGCGTGTCAACGCCAATGGTATTGCCATCCGTGTCG
ATCAATTCCAGGAAGACGGTGCCGAGCTGCGCCGTCAGCTCTTCTCGCGC
GTGTCTTCCTTCGCCACCGGTATCATTTCCAAGCTTTTGTCAGGCGCGTT
TGATCGTCAAGCTGCCAAGGACTCAGCCGTAGAACTTGAAGAACTGGTCA
GCATGCACGTCGAGGGTGTTGGTAACTCTCTCAACGAGTACAAGGATATG
TTCAAGGTTTTCAAACCGGATATTTTTGCCACTCTGGACCAGTTCCTTCG
CGACGATGTGTTCGAATGA
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Coding sequence (CDS) from alignment at tig00000160_pilon:30049..30567-

>Ggra9821.t1 ID=Ggra9821.t1|Name=Ggra9821.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=519bp|location=Sequence derived from alignment at tig00000160_pilon:30049..30567- (Gracilaria gracilis GNS1m male)
ATGATTTTCTCTCTCCCATTCCTCACCAAACCGGATGTCATATCCCTCCC
GCAACATGATAAGAACCCGGAAGAACGTCGAAAGGAAATCGAAGAGAATC
GCGAGCTTTACCAGTGGACGCACGAAGCCATTGCTGATGCCTCCATGATT
GCGGGTCTCCCCAGCAAGGAGAACCCGGAGTTTGGCTGGGTCGAAGGACT
TATCAAAGTCATCTTGCGTGTCAACGCCAATGGTATTGCCATCCGTGTCG
ATCAATTCCAGGAAGACGGTGCCGAGCTGCGCCGTCAGCTCTTCTCGCGC
GTGTCTTCCTTCGCCACCGGTATCATTTCCAAGCTTTTGTCAGGCGCGTT
TGATCGTCAAGCTGCCAAGGACTCAGCCGTAGAACTTGAAGAACTGGTCA
GCATGCACGTCGAGGGTGTTGGTAACTCTCTCAACGAGTACAAGGATATG
TTCAAGGTTTTCAAACCGGATATTTTTGCCACTCTGGACCAGTTCCTTCG
CGACGATGTGTTCGAATGA
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