Ggra982.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra982.t1
Unique NameGgra982.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length345
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000027_piloncontigtig00000027_pilon:54791..55825 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog192875.XP_004344973.1
Preferred nameLDHB
PFAMsLdh_1_C,Ldh_1_N
Max annot lvl33154|Opisthokonta
KEGG rclassRC00031,RC00044
KEGG koko:K00016
KEGG ReactionR00703,R01000,R03104
KEGG Pathwayko00010,ko00270,ko00620,ko00640,ko01100,ko01110,ko01120,ko01130,ko04922,map00010,map00270,map00620,map00640,map01100,map01110,map01120,map01130,map04922
GOsGO:0000166,GO:0000302,GO:0000768,GO:0001666,GO:0003674,GO:0003824,GO:0004457,GO:0004459,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0005929,GO:0005975,GO:0005996,GO:0006006,GO:0006007,GO:0006082,GO:0006089,GO:0006090,GO:0006091,GO:0006096,GO:0006113,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0006928,GO:0006949,GO:0006950,GO:0006979,GO:0007154,GO:0007275,GO:0007520,GO:0007525,GO:0007584,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009605,GO:0009628,GO:0009636,GO:0009653,GO:0009743,GO:0009746,GO:0009749,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010243,GO:0010941,GO:0010942,GO:0014070,GO:0014074,GO:0014902,GO:0015980,GO:0016020,GO:0016052,GO:0016053,GO:0016310,GO:0016491,GO:0016614,GO:0016616,GO:0017144,GO:0018130,GO:0019244,GO:0019249,GO:0019318,GO:0019320,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019516,GO:0019637,GO:0019659,GO:0019660,GO:0019661,GO:0019666,GO:0019674,GO:0019693,GO:0019752,GO:0019899,GO:0019900,GO:0030154,GO:0030317,GO:0031514,GO:0031667,GO:0031668,GO:0031974,GO:0032501,GO:0032502,GO:0032787,GO:0034284,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035686,GO:0036094,GO:0036126,GO:0036293,GO:0040011,GO:0042221,GO:0042493,GO:0042542,GO:0042692,GO:0042802,GO:0042866,GO:0042981,GO:0042995,GO:0043065,GO:0043067,GO:0043068,GO:0043209,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043627,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0045121,GO:0046031,GO:0046034,GO:0046365,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046677,GO:0046683,GO:0046700,GO:0046939,GO:0048037,GO:0048513,GO:0048518,GO:0048522,GO:0048569,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0050662,GO:0050789,GO:0050794,GO:0050896,GO:0051146,GO:0051179,GO:0051186,GO:0051188,GO:0051287,GO:0051591,GO:0051674,GO:0051716,GO:0055086,GO:0055114,GO:0061061,GO:0065007,GO:0070013,GO:0070482,GO:0070887,GO:0071496,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:0097159,GO:0097223,GO:0097237,GO:0097722,GO:0097729,GO:0098589,GO:0098754,GO:0098805,GO:0098857,GO:0120025,GO:0120038,GO:1901135,GO:1901137,GO:1901265,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901615,GO:1901617,GO:1901698,GO:1901700,GO:1990748
Evalue1.06e-62
EggNOG OGsCOG0039@1|root,KOG1495@2759|Eukaryota,38G9C@33154|Opisthokonta
EC1.1.1.27
DescriptionBelongs to the LDH MDH superfamily
COG categoryC
BRITEko00000,ko00001,ko01000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra982Ggra982Gracilaria gracilis GNS1m malegenetig00000027_pilon 54791..55825 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra982.t1.stop1Ggra982.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000027_pilon 54791..54793 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra982.t1.CDS1Ggra982.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000027_pilon 54791..55825 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra982.t1.exon1Ggra982.t1.exon1Gracilaria gracilis GNS1m maleexontig00000027_pilon 54791..55825 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra982.t1.start1Ggra982.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000027_pilon 55823..55825 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra982.t1Ggra982.t1Gracilaria gracilis GNS1m malepolypeptidetig00000027_pilon 54791..55825 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra982.t1 ID=Ggra982.t1|Name=Ggra982.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=345bp
MEATAAQAKAMGASAMKATRRISVVGMGRVGAAIAGALARGALATHLVLM
DVVAARAESEALDLRDAMAVRHALSIEHCSDVAATAHSDVVFITAGARQR
DGESRLQLLKRNVAILGSFVPQLVALSPTAIVVVVSNPVDVLTYVTARLA
GDGDAAARVIGSGTNLDSARLTSALARRARVAAREVHAFVIGEHGDSSLA
PWSIASVGGLPLRALSTDLEAAAARDELLAEVRGAAADIIRHKGYTATAV
GESCADLARCVLSPRVSVRAVSTRVAAGTFAAVPHDVFLSLPVRLGVGAV
GRPLVPQLDDDELELLRRSAAVLLDAQRDADVHLAPFLNHHTPA*
back to top

spliced messenger RNA

>Ggra982.t1 ID=Ggra982.t1|Name=Ggra982.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1035bp|location=Sequence derived from alignment at tig00000027_pilon:54791..55825- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGCGACCGCAGCGCAAGCCAAGGCGATGGGCGCCAGCGCCATGAA
GGCGACGCGGCGCATCTCGGTGGTGGGCATGGGCCGCGTGGGCGCGGCCA
TCGCGGGCGCGCTGGCGCGGGGCGCGCTGGCCACGCACCTGGTGCTGATG
GACGTGGTGGCGGCGCGCGCCGAGTCGGAGGCGCTGGATCTGCGCGACGC
CATGGCGGTGCGCCACGCGCTGTCCATCGAGCACTGCAGCGACGTGGCGG
CGACGGCGCACTCGGACGTGGTGTTCATCACGGCGGGCGCGCGGCAGCGC
GACGGCGAGTCTCGACTGCAGCTGCTGAAGCGCAACGTGGCCATCCTGGG
TTCGTTCGTGCCGCAGCTGGTGGCGCTGTCGCCCACCGCCATCGTGGTGG
TGGTGTCCAACCCGGTGGACGTGCTGACGTACGTGACGGCGCGTCTGGCG
GGCGACGGCGACGCAGCAGCGCGCGTGATCGGGTCGGGCACCAACCTAGA
CTCGGCGCGACTGACCAGCGCGCTGGCGCGACGCGCGCGCGTGGCGGCGC
GCGAAGTACACGCCTTCGTGATCGGCGAGCACGGCGACTCGTCGCTGGCG
CCGTGGTCCATCGCCAGCGTGGGCGGGCTGCCGCTGCGCGCGCTGTCCAC
CGACCTGGAGGCGGCGGCCGCGCGCGACGAGCTACTGGCGGAGGTGCGCG
GCGCCGCGGCCGACATCATCCGCCACAAGGGCTACACCGCCACCGCCGTG
GGCGAGTCGTGCGCCGACCTGGCGCGCTGCGTGCTGTCGCCGCGCGTCAG
CGTGCGCGCCGTCTCCACGCGCGTGGCCGCCGGCACCTTTGCGGCCGTGC
CGCACGACGTGTTCCTGTCGCTGCCCGTGCGCCTGGGCGTTGGCGCCGTC
GGCCGCCCGCTCGTGCCGCAGCTCGACGACGACGAGCTCGAGCTACTTCG
CCGCTCCGCCGCCGTGCTGCTCGACGCGCAGCGCGACGCCGACGTGCATC
TCGCGCCCTTTCTCAACCACCATACGCCCGCGTAG
back to top

protein sequence of Ggra982.t1

>Ggra982.t1 ID=Ggra982.t1|Name=Ggra982.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=345bp
MEATAAQAKAMGASAMKATRRISVVGMGRVGAAIAGALARGALATHLVLM
DVVAARAESEALDLRDAMAVRHALSIEHCSDVAATAHSDVVFITAGARQR
DGESRLQLLKRNVAILGSFVPQLVALSPTAIVVVVSNPVDVLTYVTARLA
GDGDAAARVIGSGTNLDSARLTSALARRARVAAREVHAFVIGEHGDSSLA
PWSIASVGGLPLRALSTDLEAAAARDELLAEVRGAAADIIRHKGYTATAV
GESCADLARCVLSPRVSVRAVSTRVAAGTFAAVPHDVFLSLPVRLGVGAV
GRPLVPQLDDDELELLRRSAAVLLDAQRDADVHLAPFLNHHTPA*
back to top

mRNA from alignment at tig00000027_pilon:54791..55825-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra982.t1 ID=Ggra982.t1|Name=Ggra982.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1035bp|location=Sequence derived from alignment at tig00000027_pilon:54791..55825- (Gracilaria gracilis GNS1m male)
ATGGAAGCGACCGCAGCGCAAGCCAAGGCGATGGGCGCCAGCGCCATGAA
GGCGACGCGGCGCATCTCGGTGGTGGGCATGGGCCGCGTGGGCGCGGCCA
TCGCGGGCGCGCTGGCGCGGGGCGCGCTGGCCACGCACCTGGTGCTGATG
GACGTGGTGGCGGCGCGCGCCGAGTCGGAGGCGCTGGATCTGCGCGACGC
CATGGCGGTGCGCCACGCGCTGTCCATCGAGCACTGCAGCGACGTGGCGG
CGACGGCGCACTCGGACGTGGTGTTCATCACGGCGGGCGCGCGGCAGCGC
GACGGCGAGTCTCGACTGCAGCTGCTGAAGCGCAACGTGGCCATCCTGGG
TTCGTTCGTGCCGCAGCTGGTGGCGCTGTCGCCCACCGCCATCGTGGTGG
TGGTGTCCAACCCGGTGGACGTGCTGACGTACGTGACGGCGCGTCTGGCG
GGCGACGGCGACGCAGCAGCGCGCGTGATCGGGTCGGGCACCAACCTAGA
CTCGGCGCGACTGACCAGCGCGCTGGCGCGACGCGCGCGCGTGGCGGCGC
GCGAAGTACACGCCTTCGTGATCGGCGAGCACGGCGACTCGTCGCTGGCG
CCGTGGTCCATCGCCAGCGTGGGCGGGCTGCCGCTGCGCGCGCTGTCCAC
CGACCTGGAGGCGGCGGCCGCGCGCGACGAGCTACTGGCGGAGGTGCGCG
GCGCCGCGGCCGACATCATCCGCCACAAGGGCTACACCGCCACCGCCGTG
GGCGAGTCGTGCGCCGACCTGGCGCGCTGCGTGCTGTCGCCGCGCGTCAG
CGTGCGCGCCGTCTCCACGCGCGTGGCCGCCGGCACCTTTGCGGCCGTGC
CGCACGACGTGTTCCTGTCGCTGCCCGTGCGCCTGGGCGTTGGCGCCGTC
GGCCGCCCGCTCGTGCCGCAGCTCGACGACGACGAGCTCGAGCTACTTCG
CCGCTCCGCCGCCGTGCTGCTCGACGCGCAGCGCGACGCCGACGTGCATC
TCGCGCCCTTTCTCAACCACCATACGCCCGCGTAG
back to top

Coding sequence (CDS) from alignment at tig00000027_pilon:54791..55825-

>Ggra982.t1 ID=Ggra982.t1|Name=Ggra982.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1035bp|location=Sequence derived from alignment at tig00000027_pilon:54791..55825- (Gracilaria gracilis GNS1m male)
ATGGAAGCGACCGCAGCGCAAGCCAAGGCGATGGGCGCCAGCGCCATGAA
GGCGACGCGGCGCATCTCGGTGGTGGGCATGGGCCGCGTGGGCGCGGCCA
TCGCGGGCGCGCTGGCGCGGGGCGCGCTGGCCACGCACCTGGTGCTGATG
GACGTGGTGGCGGCGCGCGCCGAGTCGGAGGCGCTGGATCTGCGCGACGC
CATGGCGGTGCGCCACGCGCTGTCCATCGAGCACTGCAGCGACGTGGCGG
CGACGGCGCACTCGGACGTGGTGTTCATCACGGCGGGCGCGCGGCAGCGC
GACGGCGAGTCTCGACTGCAGCTGCTGAAGCGCAACGTGGCCATCCTGGG
TTCGTTCGTGCCGCAGCTGGTGGCGCTGTCGCCCACCGCCATCGTGGTGG
TGGTGTCCAACCCGGTGGACGTGCTGACGTACGTGACGGCGCGTCTGGCG
GGCGACGGCGACGCAGCAGCGCGCGTGATCGGGTCGGGCACCAACCTAGA
CTCGGCGCGACTGACCAGCGCGCTGGCGCGACGCGCGCGCGTGGCGGCGC
GCGAAGTACACGCCTTCGTGATCGGCGAGCACGGCGACTCGTCGCTGGCG
CCGTGGTCCATCGCCAGCGTGGGCGGGCTGCCGCTGCGCGCGCTGTCCAC
CGACCTGGAGGCGGCGGCCGCGCGCGACGAGCTACTGGCGGAGGTGCGCG
GCGCCGCGGCCGACATCATCCGCCACAAGGGCTACACCGCCACCGCCGTG
GGCGAGTCGTGCGCCGACCTGGCGCGCTGCGTGCTGTCGCCGCGCGTCAG
CGTGCGCGCCGTCTCCACGCGCGTGGCCGCCGGCACCTTTGCGGCCGTGC
CGCACGACGTGTTCCTGTCGCTGCCCGTGCGCCTGGGCGTTGGCGCCGTC
GGCCGCCCGCTCGTGCCGCAGCTCGACGACGACGAGCTCGAGCTACTTCG
CCGCTCCGCCGCCGTGCTGCTCGACGCGCAGCGCGACGCCGACGTGCATC
TCGCGCCCTTTCTCAACCACCATACGCCCGCGTAG
back to top