Ggra9819.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9819.t1
Unique Name	Ggra9819.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	479

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000160_pilon	contig	tig00000160_pilon:26309..27745 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3983.cassava4.1_006049m
PFAMs	p450
Max annot lvl	35493\|Streptophyta
KEGG rclass	RC00046,RC00607,RC00660,RC00661,RC00704,RC00723,RC00724,RC00923,RC01184,RC01222,RC01444,RC01445,RC01710,RC01711,RC01723,RC01725,RC01727,RC01732,RC01733,RC02531
KEGG ko	ko:K00512,ko:K00517,ko:K07408,ko:K07418,ko:K13260,ko:K20623
KEGG Reaction	R02211,R02354,R02355,R03089,R03408,R03629,R03783,R04852,R04853,R06560,R06561,R06606,R06607,R07000,R07001,R07021,R07022,R07042,R07043,R07044,R07045,R07046,R07048,R07050,R07051,R07052,R07055,R07056,R07079,R07080,R07081,R07085,R07087,R07098,R07099,R07371,R07470,R07474,R07746,R08390,R08392,R08517,R08518,R09418,R09423,R09442
KEGG Pathway	ko00140,ko00380,ko00590,ko00591,ko00830,ko00905,ko00943,ko00980,ko01100,ko01110,ko04212,ko04726,ko04750,ko04913,ko04917,ko04927,ko04934,ko05204,map00140,map00380,map00590,map00591,map00830,map00905,map00943,map00980,map01100,map01110,map04212,map04726,map04750,map04913,map04917,map04927,map04934,map05204
KEGG Module	M00109,M00110
GOs	GO:0001666,GO:0002213,GO:0002376,GO:0003674,GO:0003824,GO:0004497,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006082,GO:0006725,GO:0006790,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0008150,GO:0008152,GO:0009058,GO:0009605,GO:0009607,GO:0009617,GO:0009620,GO:0009628,GO:0009682,GO:0009759,GO:0009987,GO:0012505,GO:0016020,GO:0016043,GO:0016143,GO:0016144,GO:0016491,GO:0016705,GO:0016709,GO:0018130,GO:0019438,GO:0019748,GO:0019757,GO:0019758,GO:0019760,GO:0019761,GO:0033036,GO:0033037,GO:0033554,GO:0034641,GO:0036293,GO:0036294,GO:0042221,GO:0042343,GO:0042430,GO:0042435,GO:0042545,GO:0042742,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0044550,GO:0045087,GO:0045229,GO:0046483,GO:0050832,GO:0050896,GO:0051179,GO:0051641,GO:0051704,GO:0051707,GO:0051716,GO:0052386,GO:0052482,GO:0052542,GO:0052543,GO:0052544,GO:0052545,GO:0055114,GO:0070482,GO:0070727,GO:0070887,GO:0071453,GO:0071456,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0098542,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659
Evalue	4.58e-11
EggNOG OGs	COG2124@1\|root,KOG0156@2759\|Eukaryota,37HKM@33090\|Viridiplantae,3G7FU@35493\|Streptophyta,4JISP@91835\|fabids
EC	1.14.13.53,1.14.13.89,1.14.14.1,1.14.14.19,1.14.14.32
Description	Belongs to the cytochrome P450 family
COG category	Q
BRITE	ko00000,ko00001,ko00002,ko00199,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9819	Ggra9819	Gracilaria gracilis GNS1m male	gene	tig00000160_pilon 26309..27745 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9819.t1.start1	Ggra9819.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000160_pilon 26309..26311 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9819.t1.CDS1	Ggra9819.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000160_pilon 26309..27745 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9819.t1.exon1	Ggra9819.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000160_pilon 26309..27745 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9819.t1.stop1	Ggra9819.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000160_pilon 27743..27745 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9819.t1	Ggra9819.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000160_pilon 26309..27745 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000160_pilon:26309..27745+
coding sequence from alignment at tig00000160_pilon:26309..27745+

mRNA sequence

>Ggra9819.t1 ID=Ggra9819.t1|Name=Ggra9819.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=479bp
MFAQSPRRRANGSPAAFSFGDITFAVKLLKHMASASGPDISGATIKRFIT
AKQGNKERFGGLVGSFAVDPYVLQHVVHGVEGDYGNLSETTFVPRDFDLF
LRCSTELGHRGDFVPVLFDRVSPGSALNATPERYGGCPFGDWDVYKEQEP
HVMSKDRYPEQIPTMERIIDDHMAQYVGKTEEIGKILRLLAWNLYTFTSY
GVEPSETTARMLQVFEEHSPEFDYVVRMTVNEIPYEWSPTLKAQVKEMAD
WSLAVTDERAKNIGACTHMNDVWTDTVINHADVDLKKSEGALRGVYIGGM
NNLHSAVTGAMIVNAQNDDEVYNYLMSDPDTNIENIFREALRLYTSIPTS
RVVRDEDNFMVDGKKLSTGTSVILSTYAIDTDPRSWDEPLKFDPSRFENT
EEIGFLCQKGFAPLGVSANIGGRPCGARYLAAHIMRVLMMKLLRDYKFTA
KRGGYFDFKQNAGTSVYAGKCYTKVEKR*

spliced messenger RNA

>Ggra9819.t1 ID=Ggra9819.t1|Name=Ggra9819.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1437bp|location=Sequence derived from alignment at tig00000160_pilon:26309..27745+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCGCTCAAAGCCCGCGTCGCAGAGCCAATGGATCACCGGCTGCGTT
CTCGTTTGGGGATATCACGTTCGCTGTCAAGCTTCTGAAACACATGGCTA
GCGCCTCCGGCCCTGACATCTCTGGTGCCACCATCAAGCGCTTCATTACA
GCCAAACAAGGAAACAAGGAGCGATTCGGTGGTTTAGTTGGTTCCTTCGC
TGTCGATCCGTACGTCTTGCAGCATGTCGTGCACGGAGTCGAAGGTGATT
ATGGAAACCTCAGTGAAACCACGTTTGTACCGCGCGATTTTGACTTGTTC
CTCCGATGCTCCACGGAGTTGGGCCATCGTGGCGATTTCGTACCCGTCTT
GTTTGATCGCGTTTCACCAGGCTCCGCCCTCAACGCAACCCCGGAACGCT
ATGGAGGGTGCCCATTTGGAGACTGGGATGTTTACAAGGAGCAGGAACCG
CACGTCATGTCTAAAGACAGGTACCCCGAGCAGATACCAACCATGGAACG
CATAATCGATGATCATATGGCGCAGTATGTCGGCAAGACTGAGGAGATCG
GTAAGATTCTTCGTTTATTGGCATGGAACTTGTACACGTTCACCAGCTAC
GGTGTAGAACCGAGCGAAACAACCGCTCGTATGCTCCAAGTTTTCGAGGA
GCATTCCCCGGAGTTTGACTATGTCGTACGAATGACCGTCAACGAAATTC
CGTACGAATGGTCTCCGACGCTAAAGGCGCAGGTCAAAGAGATGGCCGAT
TGGAGCTTAGCTGTTACCGACGAGCGTGCCAAGAACATTGGCGCTTGTAC
GCACATGAACGATGTATGGACAGATACCGTCATCAATCACGCGGACGTGG
ATCTGAAGAAGTCGGAGGGAGCTCTTCGTGGAGTCTACATCGGCGGCATG
AACAATCTACACAGTGCTGTCACTGGAGCCATGATTGTCAATGCTCAAAA
TGACGACGAAGTGTACAACTATCTCATGAGCGATCCAGATACGAACATTG
AAAACATCTTCCGTGAAGCACTTCGCTTGTACACGTCGATCCCCACCTCG
CGTGTCGTCCGGGATGAGGATAATTTTATGGTTGATGGCAAGAAGTTGAG
CACCGGAACCAGTGTGATTTTGTCAACCTACGCTATTGACACTGACCCTC
GCTCTTGGGATGAACCGTTGAAGTTTGACCCTTCACGATTCGAGAACACG
GAGGAGATTGGCTTTCTGTGCCAGAAGGGTTTTGCTCCACTGGGTGTGTC
AGCCAATATTGGTGGTCGACCTTGTGGCGCTCGTTACCTGGCCGCTCATA
TTATGCGTGTGCTCATGATGAAGCTTCTAAGGGACTATAAATTCACGGCG
AAGAGGGGAGGCTACTTTGACTTCAAGCAGAACGCCGGGACAAGTGTATA
CGCCGGAAAGTGCTATACGAAAGTGGAAAAGCGATGA

protein sequence of Ggra9819.t1

>Ggra9819.t1 ID=Ggra9819.t1|Name=Ggra9819.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=479bp
MFAQSPRRRANGSPAAFSFGDITFAVKLLKHMASASGPDISGATIKRFIT
AKQGNKERFGGLVGSFAVDPYVLQHVVHGVEGDYGNLSETTFVPRDFDLF
LRCSTELGHRGDFVPVLFDRVSPGSALNATPERYGGCPFGDWDVYKEQEP
HVMSKDRYPEQIPTMERIIDDHMAQYVGKTEEIGKILRLLAWNLYTFTSY
GVEPSETTARMLQVFEEHSPEFDYVVRMTVNEIPYEWSPTLKAQVKEMAD
WSLAVTDERAKNIGACTHMNDVWTDTVINHADVDLKKSEGALRGVYIGGM
NNLHSAVTGAMIVNAQNDDEVYNYLMSDPDTNIENIFREALRLYTSIPTS
RVVRDEDNFMVDGKKLSTGTSVILSTYAIDTDPRSWDEPLKFDPSRFENT
EEIGFLCQKGFAPLGVSANIGGRPCGARYLAAHIMRVLMMKLLRDYKFTA
KRGGYFDFKQNAGTSVYAGKCYTKVEKR*

mRNA from alignment at tig00000160_pilon:26309..27745+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9819.t1 ID=Ggra9819.t1|Name=Ggra9819.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1437bp|location=Sequence derived from alignment at tig00000160_pilon:26309..27745+ (Gracilaria gracilis GNS1m male)
ATGTTCGCTCAAAGCCCGCGTCGCAGAGCCAATGGATCACCGGCTGCGTT
CTCGTTTGGGGATATCACGTTCGCTGTCAAGCTTCTGAAACACATGGCTA
GCGCCTCCGGCCCTGACATCTCTGGTGCCACCATCAAGCGCTTCATTACA
GCCAAACAAGGAAACAAGGAGCGATTCGGTGGTTTAGTTGGTTCCTTCGC
TGTCGATCCGTACGTCTTGCAGCATGTCGTGCACGGAGTCGAAGGTGATT
ATGGAAACCTCAGTGAAACCACGTTTGTACCGCGCGATTTTGACTTGTTC
CTCCGATGCTCCACGGAGTTGGGCCATCGTGGCGATTTCGTACCCGTCTT
GTTTGATCGCGTTTCACCAGGCTCCGCCCTCAACGCAACCCCGGAACGCT
ATGGAGGGTGCCCATTTGGAGACTGGGATGTTTACAAGGAGCAGGAACCG
CACGTCATGTCTAAAGACAGGTACCCCGAGCAGATACCAACCATGGAACG
CATAATCGATGATCATATGGCGCAGTATGTCGGCAAGACTGAGGAGATCG
GTAAGATTCTTCGTTTATTGGCATGGAACTTGTACACGTTCACCAGCTAC
GGTGTAGAACCGAGCGAAACAACCGCTCGTATGCTCCAAGTTTTCGAGGA
GCATTCCCCGGAGTTTGACTATGTCGTACGAATGACCGTCAACGAAATTC
CGTACGAATGGTCTCCGACGCTAAAGGCGCAGGTCAAAGAGATGGCCGAT
TGGAGCTTAGCTGTTACCGACGAGCGTGCCAAGAACATTGGCGCTTGTAC
GCACATGAACGATGTATGGACAGATACCGTCATCAATCACGCGGACGTGG
ATCTGAAGAAGTCGGAGGGAGCTCTTCGTGGAGTCTACATCGGCGGCATG
AACAATCTACACAGTGCTGTCACTGGAGCCATGATTGTCAATGCTCAAAA
TGACGACGAAGTGTACAACTATCTCATGAGCGATCCAGATACGAACATTG
AAAACATCTTCCGTGAAGCACTTCGCTTGTACACGTCGATCCCCACCTCG
CGTGTCGTCCGGGATGAGGATAATTTTATGGTTGATGGCAAGAAGTTGAG
CACCGGAACCAGTGTGATTTTGTCAACCTACGCTATTGACACTGACCCTC
GCTCTTGGGATGAACCGTTGAAGTTTGACCCTTCACGATTCGAGAACACG
GAGGAGATTGGCTTTCTGTGCCAGAAGGGTTTTGCTCCACTGGGTGTGTC
AGCCAATATTGGTGGTCGACCTTGTGGCGCTCGTTACCTGGCCGCTCATA
TTATGCGTGTGCTCATGATGAAGCTTCTAAGGGACTATAAATTCACGGCG
AAGAGGGGAGGCTACTTTGACTTCAAGCAGAACGCCGGGACAAGTGTATA
CGCCGGAAAGTGCTATACGAAAGTGGAAAAGCGATGA

Coding sequence (CDS) from alignment at tig00000160_pilon:26309..27745+

>Ggra9819.t1 ID=Ggra9819.t1|Name=Ggra9819.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1437bp|location=Sequence derived from alignment at tig00000160_pilon:26309..27745+ (Gracilaria gracilis GNS1m male)
ATGTTCGCTCAAAGCCCGCGTCGCAGAGCCAATGGATCACCGGCTGCGTT
CTCGTTTGGGGATATCACGTTCGCTGTCAAGCTTCTGAAACACATGGCTA
GCGCCTCCGGCCCTGACATCTCTGGTGCCACCATCAAGCGCTTCATTACA
GCCAAACAAGGAAACAAGGAGCGATTCGGTGGTTTAGTTGGTTCCTTCGC
TGTCGATCCGTACGTCTTGCAGCATGTCGTGCACGGAGTCGAAGGTGATT
ATGGAAACCTCAGTGAAACCACGTTTGTACCGCGCGATTTTGACTTGTTC
CTCCGATGCTCCACGGAGTTGGGCCATCGTGGCGATTTCGTACCCGTCTT
GTTTGATCGCGTTTCACCAGGCTCCGCCCTCAACGCAACCCCGGAACGCT
ATGGAGGGTGCCCATTTGGAGACTGGGATGTTTACAAGGAGCAGGAACCG
CACGTCATGTCTAAAGACAGGTACCCCGAGCAGATACCAACCATGGAACG
CATAATCGATGATCATATGGCGCAGTATGTCGGCAAGACTGAGGAGATCG
GTAAGATTCTTCGTTTATTGGCATGGAACTTGTACACGTTCACCAGCTAC
GGTGTAGAACCGAGCGAAACAACCGCTCGTATGCTCCAAGTTTTCGAGGA
GCATTCCCCGGAGTTTGACTATGTCGTACGAATGACCGTCAACGAAATTC
CGTACGAATGGTCTCCGACGCTAAAGGCGCAGGTCAAAGAGATGGCCGAT
TGGAGCTTAGCTGTTACCGACGAGCGTGCCAAGAACATTGGCGCTTGTAC
GCACATGAACGATGTATGGACAGATACCGTCATCAATCACGCGGACGTGG
ATCTGAAGAAGTCGGAGGGAGCTCTTCGTGGAGTCTACATCGGCGGCATG
AACAATCTACACAGTGCTGTCACTGGAGCCATGATTGTCAATGCTCAAAA
TGACGACGAAGTGTACAACTATCTCATGAGCGATCCAGATACGAACATTG
AAAACATCTTCCGTGAAGCACTTCGCTTGTACACGTCGATCCCCACCTCG
CGTGTCGTCCGGGATGAGGATAATTTTATGGTTGATGGCAAGAAGTTGAG
CACCGGAACCAGTGTGATTTTGTCAACCTACGCTATTGACACTGACCCTC
GCTCTTGGGATGAACCGTTGAAGTTTGACCCTTCACGATTCGAGAACACG
GAGGAGATTGGCTTTCTGTGCCAGAAGGGTTTTGCTCCACTGGGTGTGTC
AGCCAATATTGGTGGTCGACCTTGTGGCGCTCGTTACCTGGCCGCTCATA
TTATGCGTGTGCTCATGATGAAGCTTCTAAGGGACTATAAATTCACGGCG
AAGAGGGGAGGCTACTTTGACTTCAAGCAGAACGCCGGGACAAGTGTATA
CGCCGGAAAGTGCTATACGAAAGTGGAAAAGCGATGA