Ggra9811.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9811.t1
Unique NameGgra9811.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length446
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000236_piloncontigtig00000236_pilon:63970..65580 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7994.ENSAMXP00000019092
Preferred nameRBBP7
PFAMsCAF1C_H4-bd,WD40
Max annot lvl33208|Metazoa
KEGG koko:K10752,ko:K11659
KEGG Pathwayko04218,map04218
GOsGO:0000003,GO:0000118,GO:0000122,GO:0000228,GO:0000785,GO:0000790,GO:0001558,GO:0001708,GO:0002244,GO:0002376,GO:0002520,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004407,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005829,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006336,GO:0006338,GO:0006355,GO:0006357,GO:0006464,GO:0006476,GO:0006807,GO:0006950,GO:0006996,GO:0007275,GO:0007548,GO:0008150,GO:0008152,GO:0008283,GO:0008406,GO:0009266,GO:0009408,GO:0009611,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009790,GO:0009792,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010286,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010629,GO:0010948,GO:0014070,GO:0016043,GO:0016569,GO:0016570,GO:0016575,GO:0016581,GO:0016787,GO:0016810,GO:0016811,GO:0017053,GO:0019213,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0022414,GO:0022607,GO:0030097,GO:0030154,GO:0030308,GO:0031055,GO:0031099,GO:0031101,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031497,GO:0031519,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0033558,GO:0033993,GO:0034080,GO:0034508,GO:0034605,GO:0034622,GO:0034708,GO:0034724,GO:0034728,GO:0035097,GO:0035098,GO:0035239,GO:0035295,GO:0035601,GO:0036211,GO:0040007,GO:0040008,GO:0040029,GO:0040035,GO:0042060,GO:0042221,GO:0042246,GO:0042826,GO:0043044,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043486,GO:0043687,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045137,GO:0045138,GO:0045165,GO:0045786,GO:0045814,GO:0045892,GO:0045926,GO:0045934,GO:0046661,GO:0048513,GO:0048519,GO:0048523,GO:0048534,GO:0048545,GO:0048546,GO:0048557,GO:0048562,GO:0048565,GO:0048566,GO:0048568,GO:0048589,GO:0048598,GO:0048608,GO:0048731,GO:0048806,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051716,GO:0051726,GO:0055123,GO:0060255,GO:0061458,GO:0061641,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070176,GO:0070316,GO:0070317,GO:0070370,GO:0070603,GO:0071103,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090545,GO:0090568,GO:0090571,GO:0090598,GO:0097159,GO:0098732,GO:0140096,GO:1901363,GO:1901564,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1904949,GO:1990234,GO:2000112,GO:2000113,GO:2001141
Evalue1.76e-138
EggNOG OGsKOG0264@1|root,KOG0264@2759|Eukaryota,38E9H@33154|Opisthokonta,3BC0N@33208|Metazoa,3CUFN@33213|Bilateria,47ZEP@7711|Chordata,49075@7742|Vertebrata,49XRI@7898|Actinopterygii
DescriptionRetinoblastoma binding protein 4, like
COG categoryB
BRITEko00000,ko00001,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9811Ggra9811Gracilaria gracilis GNS1m malegenetig00000236_pilon 63970..65580 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9811.t1Ggra9811.t1Gracilaria gracilis GNS1m malepolypeptidetig00000236_pilon 63970..65580 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9811.t1.stop1Ggra9811.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000236_pilon 63970..63972 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9811.t1.CDS1Ggra9811.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000236_pilon 63970..64881 -
Ggra9811.t1.CDS2Ggra9811.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000236_pilon 64976..65106 -
Ggra9811.t1.CDS3Ggra9811.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000236_pilon 65195..65354 -
Ggra9811.t1.CDS4Ggra9811.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000236_pilon 65446..65580 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9811.t1.exon1Ggra9811.t1.exon1Gracilaria gracilis GNS1m maleexontig00000236_pilon 63970..64881 -
Ggra9811.t1.exon2Ggra9811.t1.exon2Gracilaria gracilis GNS1m maleexontig00000236_pilon 64976..65106 -
Ggra9811.t1.exon3Ggra9811.t1.exon3Gracilaria gracilis GNS1m maleexontig00000236_pilon 65195..65354 -
Ggra9811.t1.exon4Ggra9811.t1.exon4Gracilaria gracilis GNS1m maleexontig00000236_pilon 65446..65580 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9811.t1.intron1Ggra9811.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000236_pilon 64882..64975 -
Ggra9811.t1.intron2Ggra9811.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000236_pilon 65107..65194 -
Ggra9811.t1.intron3Ggra9811.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000236_pilon 65355..65445 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9811.t1.start1Ggra9811.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000236_pilon 65578..65580 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9811.t1 ID=Ggra9811.t1|Name=Ggra9811.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=446bp
MDQMSNSDRLINEEYKIWKKNTPFLYDLVITKALEWPSLTCQWLPFKREK
TTGDYSVEKLVLGTHTSEGEQNHLMIAEARIPNDNAEIDGTKYSDRDGDE
QGGYRTGQHGKVEIIQKINHDGEVNRARYMPQNPFIIATKTIQSDLFVFD
TSKHQFKPPTDGKCNPQLRLRGHKKEGYGVSWNAKEAGRLVSGADDKLVC
TWNIDAPSMKSGGVLEANCVYEAHSDVVEDVAWHNFHTSIFASVGDDRKL
LVWDVREKDRRRPIHKVEAHKGEVNCVSFNPFSEFVLATGSADRTVALWD
MRNLSLKVHSFENHADDILQVEWHPFCEAVLASGSSDRRVSIWNLAKIGE
EQDAEDAEDGPPELLFIHGGHTNKVSDFSWNRNEPWVIASVAEDNIVQIW
CMAEHIYEDELGEAKEGNNKHKDDVAMTEVQHKLADKRVKDEELE*
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spliced messenger RNA

>Ggra9811.t1 ID=Ggra9811.t1|Name=Ggra9811.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1338bp|location=Sequence derived from alignment at tig00000236_pilon:63970..65580- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCAAATGTCAAACTCTGACCGCCTCATCAATGAGGAGTACAAGAT
TTGGAAGAAGAACACACCTTTTCTGTATGATCTTGTGATTACCAAGGCGC
TGGAATGGCCCTCTCTGACTTGCCAATGGCTGCCATTTAAGCGGGAGAAA
ACGACGGGCGATTACTCTGTGGAGAAGTTGGTACTGGGCACGCACACGTC
TGAGGGCGAGCAAAACCATCTCATGATTGCGGAGGCGCGAATCCCCAACG
ACAATGCCGAAATCGATGGTACCAAATACTCGGACCGCGACGGAGATGAG
CAAGGCGGCTATAGGACGGGTCAGCACGGCAAGGTGGAGATTATCCAGAA
AATCAACCATGACGGTGAAGTGAACAGAGCGCGTTACATGCCGCAAAACC
CGTTCATCATTGCCACAAAGACAATACAAAGCGATCTGTTTGTGTTTGAC
ACCTCAAAGCACCAATTCAAGCCGCCAACGGACGGCAAATGCAACCCACA
GCTGCGACTGAGGGGGCACAAGAAGGAGGGGTACGGCGTGTCATGGAACG
CAAAGGAAGCGGGCAGGCTGGTGTCCGGCGCCGACGACAAGCTGGTCTGC
ACGTGGAACATTGACGCGCCCAGCATGAAGAGCGGCGGCGTGCTGGAGGC
CAACTGCGTGTACGAGGCGCACAGCGACGTGGTGGAAGACGTGGCGTGGC
ACAACTTTCACACGTCCATCTTCGCGTCGGTGGGCGACGACCGCAAGCTG
CTGGTGTGGGACGTGCGCGAAAAGGACCGCAGGAGACCGATCCACAAGGT
GGAGGCGCACAAGGGCGAGGTGAACTGCGTGAGCTTCAACCCGTTCTCGG
AGTTTGTGCTGGCCACCGGCTCGGCGGACCGCACGGTGGCGCTGTGGGAC
ATGCGCAACCTGTCGCTCAAGGTGCACTCGTTTGAGAACCACGCGGACGA
CATTCTGCAGGTGGAGTGGCACCCGTTCTGCGAGGCGGTGCTGGCGTCGG
GCAGCAGCGACCGGCGCGTGAGTATTTGGAACCTGGCCAAGATTGGCGAG
GAACAGGACGCGGAGGACGCGGAGGACGGGCCGCCGGAATTGCTGTTTAT
TCACGGCGGGCACACGAACAAGGTGTCGGACTTTTCGTGGAACCGCAACG
AACCGTGGGTGATTGCGTCGGTGGCGGAGGACAACATTGTGCAGATCTGG
TGCATGGCGGAGCACATTTATGAAGACGAGCTGGGCGAGGCCAAGGAAGG
CAACAACAAGCACAAGGATGATGTGGCGATGACAGAGGTGCAACACAAAC
TGGCGGACAAGCGCGTGAAGGACGAGGAGCTAGAATAG
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protein sequence of Ggra9811.t1

>Ggra9811.t1 ID=Ggra9811.t1|Name=Ggra9811.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=446bp
MDQMSNSDRLINEEYKIWKKNTPFLYDLVITKALEWPSLTCQWLPFKREK
TTGDYSVEKLVLGTHTSEGEQNHLMIAEARIPNDNAEIDGTKYSDRDGDE
QGGYRTGQHGKVEIIQKINHDGEVNRARYMPQNPFIIATKTIQSDLFVFD
TSKHQFKPPTDGKCNPQLRLRGHKKEGYGVSWNAKEAGRLVSGADDKLVC
TWNIDAPSMKSGGVLEANCVYEAHSDVVEDVAWHNFHTSIFASVGDDRKL
LVWDVREKDRRRPIHKVEAHKGEVNCVSFNPFSEFVLATGSADRTVALWD
MRNLSLKVHSFENHADDILQVEWHPFCEAVLASGSSDRRVSIWNLAKIGE
EQDAEDAEDGPPELLFIHGGHTNKVSDFSWNRNEPWVIASVAEDNIVQIW
CMAEHIYEDELGEAKEGNNKHKDDVAMTEVQHKLADKRVKDEELE*
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mRNA from alignment at tig00000236_pilon:63970..65580-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9811.t1 ID=Ggra9811.t1|Name=Ggra9811.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1611bp|location=Sequence derived from alignment at tig00000236_pilon:63970..65580- (Gracilaria gracilis GNS1m male)
ATGGATCAAATGTCAAACTCTGACCGCCTCATCAATGAGGAGTACAAGAT
TTGGAAGAAGAACACACCTTTTCTGTATGATCTTGTGATTACCAAGGCGC
TGGAATGGCCCTCTCTGACTTGCCAATGGCTGCCAGTACGTACCGAACCC
ACTCGATTGCGAATGCGTCACACAACTTTTTGGTGGTCGCCAAAACTAAC
TTGCGAGTTGCCTTTTTGTTATTCAGTTTAAGCGGGAGAAAACGACGGGC
GATTACTCTGTGGAGAAGTTGGTACTGGGCACGCACACGTCTGAGGGCGA
GCAAAACCATCTCATGATTGCGGAGGCGCGAATCCCCAACGACAATGCCG
AAATCGATGGTACCAAATACTCGGACCGCGACGGAGGTATGTATACTAGC
AAATCAAATGAGCTCAAAAGTGGCACATGTAACTAACTGCGCTGTTTGCG
TGCGTTTTTTGTTGCTTGACAAAGATGAGCAAGGCGGCTATAGGACGGGT
CAGCACGGCAAGGTGGAGATTATCCAGAAAATCAACCATGACGGTGAAGT
GAACAGAGCGCGTTACATGCCGCAAAACCCGTTCATCATTGCCACAAAGA
CAATAGTATGTTTTGAAAGCTGTCCGTTTGTTTCTTTTCTTTGTTAACAA
TTGACTAACTAGAGCTGTGTGTTGCGCGCGATTGCGAACGACGGCGCAGC
AAAGCGATCTGTTTGTGTTTGACACCTCAAAGCACCAATTCAAGCCGCCA
ACGGACGGCAAATGCAACCCACAGCTGCGACTGAGGGGGCACAAGAAGGA
GGGGTACGGCGTGTCATGGAACGCAAAGGAAGCGGGCAGGCTGGTGTCCG
GCGCCGACGACAAGCTGGTCTGCACGTGGAACATTGACGCGCCCAGCATG
AAGAGCGGCGGCGTGCTGGAGGCCAACTGCGTGTACGAGGCGCACAGCGA
CGTGGTGGAAGACGTGGCGTGGCACAACTTTCACACGTCCATCTTCGCGT
CGGTGGGCGACGACCGCAAGCTGCTGGTGTGGGACGTGCGCGAAAAGGAC
CGCAGGAGACCGATCCACAAGGTGGAGGCGCACAAGGGCGAGGTGAACTG
CGTGAGCTTCAACCCGTTCTCGGAGTTTGTGCTGGCCACCGGCTCGGCGG
ACCGCACGGTGGCGCTGTGGGACATGCGCAACCTGTCGCTCAAGGTGCAC
TCGTTTGAGAACCACGCGGACGACATTCTGCAGGTGGAGTGGCACCCGTT
CTGCGAGGCGGTGCTGGCGTCGGGCAGCAGCGACCGGCGCGTGAGTATTT
GGAACCTGGCCAAGATTGGCGAGGAACAGGACGCGGAGGACGCGGAGGAC
GGGCCGCCGGAATTGCTGTTTATTCACGGCGGGCACACGAACAAGGTGTC
GGACTTTTCGTGGAACCGCAACGAACCGTGGGTGATTGCGTCGGTGGCGG
AGGACAACATTGTGCAGATCTGGTGCATGGCGGAGCACATTTATGAAGAC
GAGCTGGGCGAGGCCAAGGAAGGCAACAACAAGCACAAGGATGATGTGGC
GATGACAGAGGTGCAACACAAACTGGCGGACAAGCGCGTGAAGGACGAGG
AGCTAGAATAG
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Coding sequence (CDS) from alignment at tig00000236_pilon:63970..65580-

>Ggra9811.t1 ID=Ggra9811.t1|Name=Ggra9811.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1338bp|location=Sequence derived from alignment at tig00000236_pilon:63970..65580- (Gracilaria gracilis GNS1m male)
ATGGATCAAATGTCAAACTCTGACCGCCTCATCAATGAGGAGTACAAGAT
TTGGAAGAAGAACACACCTTTTCTGTATGATCTTGTGATTACCAAGGCGC
TGGAATGGCCCTCTCTGACTTGCCAATGGCTGCCATTTAAGCGGGAGAAA
ACGACGGGCGATTACTCTGTGGAGAAGTTGGTACTGGGCACGCACACGTC
TGAGGGCGAGCAAAACCATCTCATGATTGCGGAGGCGCGAATCCCCAACG
ACAATGCCGAAATCGATGGTACCAAATACTCGGACCGCGACGGAGATGAG
CAAGGCGGCTATAGGACGGGTCAGCACGGCAAGGTGGAGATTATCCAGAA
AATCAACCATGACGGTGAAGTGAACAGAGCGCGTTACATGCCGCAAAACC
CGTTCATCATTGCCACAAAGACAATACAAAGCGATCTGTTTGTGTTTGAC
ACCTCAAAGCACCAATTCAAGCCGCCAACGGACGGCAAATGCAACCCACA
GCTGCGACTGAGGGGGCACAAGAAGGAGGGGTACGGCGTGTCATGGAACG
CAAAGGAAGCGGGCAGGCTGGTGTCCGGCGCCGACGACAAGCTGGTCTGC
ACGTGGAACATTGACGCGCCCAGCATGAAGAGCGGCGGCGTGCTGGAGGC
CAACTGCGTGTACGAGGCGCACAGCGACGTGGTGGAAGACGTGGCGTGGC
ACAACTTTCACACGTCCATCTTCGCGTCGGTGGGCGACGACCGCAAGCTG
CTGGTGTGGGACGTGCGCGAAAAGGACCGCAGGAGACCGATCCACAAGGT
GGAGGCGCACAAGGGCGAGGTGAACTGCGTGAGCTTCAACCCGTTCTCGG
AGTTTGTGCTGGCCACCGGCTCGGCGGACCGCACGGTGGCGCTGTGGGAC
ATGCGCAACCTGTCGCTCAAGGTGCACTCGTTTGAGAACCACGCGGACGA
CATTCTGCAGGTGGAGTGGCACCCGTTCTGCGAGGCGGTGCTGGCGTCGG
GCAGCAGCGACCGGCGCGTGAGTATTTGGAACCTGGCCAAGATTGGCGAG
GAACAGGACGCGGAGGACGCGGAGGACGGGCCGCCGGAATTGCTGTTTAT
TCACGGCGGGCACACGAACAAGGTGTCGGACTTTTCGTGGAACCGCAACG
AACCGTGGGTGATTGCGTCGGTGGCGGAGGACAACATTGTGCAGATCTGG
TGCATGGCGGAGCACATTTATGAAGACGAGCTGGGCGAGGCCAAGGAAGG
CAACAACAAGCACAAGGATGATGTGGCGATGACAGAGGTGCAACACAAAC
TGGCGGACAAGCGCGTGAAGGACGAGGAGCTAGAATAG
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