Ggra9806.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9806.t1
Unique NameGgra9806.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length179
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000236_piloncontigtig00000236_pilon:42849..43385 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9806Ggra9806Gracilaria gracilis GNS1m malegenetig00000236_pilon 42849..43385 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9806.t1.start1Ggra9806.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000236_pilon 42849..42851 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9806.t1.CDS1Ggra9806.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000236_pilon 42849..43385 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9806.t1.exon1Ggra9806.t1.exon1Gracilaria gracilis GNS1m maleexontig00000236_pilon 42849..43385 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9806.t1.stop1Ggra9806.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000236_pilon 43383..43385 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9806.t1Ggra9806.t1Gracilaria gracilis GNS1m malepolypeptidetig00000236_pilon 42849..43385 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9806.t1 ID=Ggra9806.t1|Name=Ggra9806.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=179bp
MSGSGTKSVLLSRLGSKKGTSFPRTLQLKQLLEEQGLDVSESNGRNRAPN
WTKEESARLCHVIADSRNATVPARMYQRITTRAELDGPRHDPFVEEFRHL
FNDSEFKPEPPELHDGVTMDVLLSIDPSIRRNVRDGQALKQKWRKLRSVY
IVACKNFQASGQGDPDAFTSFTQGDDIV*
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spliced messenger RNA

>Ggra9806.t1 ID=Ggra9806.t1|Name=Ggra9806.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=537bp|location=Sequence derived from alignment at tig00000236_pilon:42849..43385+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGGGTCCGGTACGAAAAGTGTGTTACTCTCGCGCCTTGGTAGCAA
AAAAGGAACATCGTTTCCGAGGACTTTGCAGCTCAAACAACTACTTGAGG
AGCAAGGCCTCGATGTATCCGAAAGTAACGGTCGAAATCGTGCGCCGAAC
TGGACGAAGGAGGAGAGCGCCCGGCTTTGCCACGTCATAGCCGATTCGAG
AAACGCTACCGTGCCGGCACGAATGTATCAACGTATAACGACCAGAGCTG
AGCTTGATGGGCCACGCCATGACCCATTCGTCGAAGAATTTCGCCACTTG
TTCAACGACTCTGAATTCAAACCGGAACCACCGGAGCTTCATGATGGGGT
AACGATGGACGTCCTTCTCAGCATTGACCCATCTATAAGGAGAAATGTTC
GCGACGGCCAAGCGTTAAAACAAAAATGGAGAAAGCTTCGTTCTGTGTAC
ATCGTTGCTTGTAAGAATTTCCAAGCGTCCGGGCAGGGAGATCCAGATGC
TTTTACTTCCTTCACCCAAGGCGATGACATAGTATGA
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protein sequence of Ggra9806.t1

>Ggra9806.t1 ID=Ggra9806.t1|Name=Ggra9806.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=179bp
MSGSGTKSVLLSRLGSKKGTSFPRTLQLKQLLEEQGLDVSESNGRNRAPN
WTKEESARLCHVIADSRNATVPARMYQRITTRAELDGPRHDPFVEEFRHL
FNDSEFKPEPPELHDGVTMDVLLSIDPSIRRNVRDGQALKQKWRKLRSVY
IVACKNFQASGQGDPDAFTSFTQGDDIV*
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mRNA from alignment at tig00000236_pilon:42849..43385+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9806.t1 ID=Ggra9806.t1|Name=Ggra9806.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=537bp|location=Sequence derived from alignment at tig00000236_pilon:42849..43385+ (Gracilaria gracilis GNS1m male)
ATGTCTGGGTCCGGTACGAAAAGTGTGTTACTCTCGCGCCTTGGTAGCAA
AAAAGGAACATCGTTTCCGAGGACTTTGCAGCTCAAACAACTACTTGAGG
AGCAAGGCCTCGATGTATCCGAAAGTAACGGTCGAAATCGTGCGCCGAAC
TGGACGAAGGAGGAGAGCGCCCGGCTTTGCCACGTCATAGCCGATTCGAG
AAACGCTACCGTGCCGGCACGAATGTATCAACGTATAACGACCAGAGCTG
AGCTTGATGGGCCACGCCATGACCCATTCGTCGAAGAATTTCGCCACTTG
TTCAACGACTCTGAATTCAAACCGGAACCACCGGAGCTTCATGATGGGGT
AACGATGGACGTCCTTCTCAGCATTGACCCATCTATAAGGAGAAATGTTC
GCGACGGCCAAGCGTTAAAACAAAAATGGAGAAAGCTTCGTTCTGTGTAC
ATCGTTGCTTGTAAGAATTTCCAAGCGTCCGGGCAGGGAGATCCAGATGC
TTTTACTTCCTTCACCCAAGGCGATGACATAGTATGA
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Coding sequence (CDS) from alignment at tig00000236_pilon:42849..43385+

>Ggra9806.t1 ID=Ggra9806.t1|Name=Ggra9806.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=537bp|location=Sequence derived from alignment at tig00000236_pilon:42849..43385+ (Gracilaria gracilis GNS1m male)
ATGTCTGGGTCCGGTACGAAAAGTGTGTTACTCTCGCGCCTTGGTAGCAA
AAAAGGAACATCGTTTCCGAGGACTTTGCAGCTCAAACAACTACTTGAGG
AGCAAGGCCTCGATGTATCCGAAAGTAACGGTCGAAATCGTGCGCCGAAC
TGGACGAAGGAGGAGAGCGCCCGGCTTTGCCACGTCATAGCCGATTCGAG
AAACGCTACCGTGCCGGCACGAATGTATCAACGTATAACGACCAGAGCTG
AGCTTGATGGGCCACGCCATGACCCATTCGTCGAAGAATTTCGCCACTTG
TTCAACGACTCTGAATTCAAACCGGAACCACCGGAGCTTCATGATGGGGT
AACGATGGACGTCCTTCTCAGCATTGACCCATCTATAAGGAGAAATGTTC
GCGACGGCCAAGCGTTAAAACAAAAATGGAGAAAGCTTCGTTCTGTGTAC
ATCGTTGCTTGTAAGAATTTCCAAGCGTCCGGGCAGGGAGATCCAGATGC
TTTTACTTCCTTCACCCAAGGCGATGACATAGTATGA
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