Ggra9769.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9769.t1
Unique NameGgra9769.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length195
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000067_piloncontigtig00000067_pilon:170295..170879 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9769Ggra9769Gracilaria gracilis GNS1m malegenetig00000067_pilon 170295..170879 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9769.t1.stop1Ggra9769.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000067_pilon 170295..170297 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9769.t1.CDS1Ggra9769.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000067_pilon 170295..170879 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9769.t1.exon1Ggra9769.t1.exon1Gracilaria gracilis GNS1m maleexontig00000067_pilon 170295..170879 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9769.t1.start1Ggra9769.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000067_pilon 170877..170879 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9769.t1Ggra9769.t1Gracilaria gracilis GNS1m malepolypeptidetig00000067_pilon 170295..170879 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9769.t1 ID=Ggra9769.t1|Name=Ggra9769.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=195bp
MSSHKTSSLLAVVLLCCVLFSSSDAQGRCIYEACNFNRQTTPANFHDLLV
FYCRRCCNDIWRLNRATNTVRGYPPSVGLSPALRDAAEEIREVFTTVFNN
RANRQTAAEELEFGKEELQEALESLEQGLEANVFDPLDTAVENAITTAAE
ATNLAGDLEGGWNLPAVIELMEAITAEAGYALEILEMIAAILLL*
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spliced messenger RNA

>Ggra9769.t1 ID=Ggra9769.t1|Name=Ggra9769.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=585bp|location=Sequence derived from alignment at tig00000067_pilon:170295..170879- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCTCTCACAAGACTTCTTCATTGTTAGCAGTGGTTCTGCTCTGCTG
CGTTTTGTTCTCTAGCTCCGATGCGCAAGGTCGATGCATCTACGAGGCTT
GTAACTTCAACCGACAAACTACGCCCGCGAACTTTCATGATCTGTTGGTT
TTTTACTGTCGCCGCTGTTGCAATGACATCTGGAGACTCAACCGTGCCAC
CAATACTGTGCGAGGCTATCCTCCTTCAGTTGGCTTAAGCCCAGCACTGC
GAGATGCGGCCGAAGAAATCCGCGAAGTGTTCACGACGGTGTTCAACAAT
AGAGCCAATCGCCAGACCGCGGCAGAAGAGTTGGAGTTTGGGAAGGAGGA
GCTGCAGGAGGCGTTGGAAAGCCTGGAACAAGGATTAGAGGCAAATGTTT
TTGATCCGCTGGACACTGCTGTAGAGAACGCCATCACCACTGCGGCTGAA
GCTACCAATCTTGCGGGGGATCTAGAAGGGGGATGGAACCTGCCTGCTGT
TATCGAGTTGATGGAAGCTATTACTGCTGAAGCCGGTTACGCGCTCGAAA
TTCTGGAGATGATTGCTGCGATTCTTTTGCTCTGA
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protein sequence of Ggra9769.t1

>Ggra9769.t1 ID=Ggra9769.t1|Name=Ggra9769.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=195bp
MSSHKTSSLLAVVLLCCVLFSSSDAQGRCIYEACNFNRQTTPANFHDLLV
FYCRRCCNDIWRLNRATNTVRGYPPSVGLSPALRDAAEEIREVFTTVFNN
RANRQTAAEELEFGKEELQEALESLEQGLEANVFDPLDTAVENAITTAAE
ATNLAGDLEGGWNLPAVIELMEAITAEAGYALEILEMIAAILLL*
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mRNA from alignment at tig00000067_pilon:170295..170879-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9769.t1 ID=Ggra9769.t1|Name=Ggra9769.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=585bp|location=Sequence derived from alignment at tig00000067_pilon:170295..170879- (Gracilaria gracilis GNS1m male)
ATGTCCTCTCACAAGACTTCTTCATTGTTAGCAGTGGTTCTGCTCTGCTG
CGTTTTGTTCTCTAGCTCCGATGCGCAAGGTCGATGCATCTACGAGGCTT
GTAACTTCAACCGACAAACTACGCCCGCGAACTTTCATGATCTGTTGGTT
TTTTACTGTCGCCGCTGTTGCAATGACATCTGGAGACTCAACCGTGCCAC
CAATACTGTGCGAGGCTATCCTCCTTCAGTTGGCTTAAGCCCAGCACTGC
GAGATGCGGCCGAAGAAATCCGCGAAGTGTTCACGACGGTGTTCAACAAT
AGAGCCAATCGCCAGACCGCGGCAGAAGAGTTGGAGTTTGGGAAGGAGGA
GCTGCAGGAGGCGTTGGAAAGCCTGGAACAAGGATTAGAGGCAAATGTTT
TTGATCCGCTGGACACTGCTGTAGAGAACGCCATCACCACTGCGGCTGAA
GCTACCAATCTTGCGGGGGATCTAGAAGGGGGATGGAACCTGCCTGCTGT
TATCGAGTTGATGGAAGCTATTACTGCTGAAGCCGGTTACGCGCTCGAAA
TTCTGGAGATGATTGCTGCGATTCTTTTGCTCTGA
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Coding sequence (CDS) from alignment at tig00000067_pilon:170295..170879-

>Ggra9769.t1 ID=Ggra9769.t1|Name=Ggra9769.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=585bp|location=Sequence derived from alignment at tig00000067_pilon:170295..170879- (Gracilaria gracilis GNS1m male)
ATGTCCTCTCACAAGACTTCTTCATTGTTAGCAGTGGTTCTGCTCTGCTG
CGTTTTGTTCTCTAGCTCCGATGCGCAAGGTCGATGCATCTACGAGGCTT
GTAACTTCAACCGACAAACTACGCCCGCGAACTTTCATGATCTGTTGGTT
TTTTACTGTCGCCGCTGTTGCAATGACATCTGGAGACTCAACCGTGCCAC
CAATACTGTGCGAGGCTATCCTCCTTCAGTTGGCTTAAGCCCAGCACTGC
GAGATGCGGCCGAAGAAATCCGCGAAGTGTTCACGACGGTGTTCAACAAT
AGAGCCAATCGCCAGACCGCGGCAGAAGAGTTGGAGTTTGGGAAGGAGGA
GCTGCAGGAGGCGTTGGAAAGCCTGGAACAAGGATTAGAGGCAAATGTTT
TTGATCCGCTGGACACTGCTGTAGAGAACGCCATCACCACTGCGGCTGAA
GCTACCAATCTTGCGGGGGATCTAGAAGGGGGATGGAACCTGCCTGCTGT
TATCGAGTTGATGGAAGCTATTACTGCTGAAGCCGGTTACGCGCTCGAAA
TTCTGGAGATGATTGCTGCGATTCTTTTGCTCTGA
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