Ggra9683.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9683.t1
Unique NameGgra9683.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length315
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000248_piloncontigtig00000248_pilon:69264..70208 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog710696.Intca_0193
Max annot lvl201174|Actinobacteria
Evalue6.54e-23
EggNOG OGsCOG3391@1|root,COG3391@2|Bacteria,2I3GE@201174|Actinobacteria,4FFTN@85021|Intrasporangiaceae
Descriptionamine dehydrogenase activity
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9683Ggra9683Gracilaria gracilis GNS1m malegenetig00000248_pilon 69264..70208 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9683.t1.stop1Ggra9683.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000248_pilon 69264..69266 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9683.t1.CDS1Ggra9683.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000248_pilon 69264..70208 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9683.t1.exon1Ggra9683.t1.exon1Gracilaria gracilis GNS1m maleexontig00000248_pilon 69264..70208 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9683.t1.start1Ggra9683.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000248_pilon 70206..70208 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9683.t1Ggra9683.t1Gracilaria gracilis GNS1m malepolypeptidetig00000248_pilon 69264..70208 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9683.t1 ID=Ggra9683.t1|Name=Ggra9683.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=315bp
MSTIAVFLFAVLRVALSQKIRLPQNTQAEGVAHAAGSLFFAGDFRRGGVL
LVDFATGFTTTVVPNVPDRLATGLAARNGRLFAAGGGTFGALTSVPRMFV
YDIVSGDTIAACDAPVGALVNDVFADDDFAYYTDSFLGNVYVLRLASLPR
CELSVLELPRESFALGPPSFAANGIVLFASGLIVSNTNSGSLFFVDLRTN
STQRILPDDSVVGAGGLEIRADRSGGGATLFVAQSTASRISIWRLWKKGA
EVSARFVQNITSPDFDTPGTIAVGGGRLVVGDPRFSTLPPTRVLPDGARS
LLFGFRIRRERHSK*
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spliced messenger RNA

>Ggra9683.t1 ID=Ggra9683.t1|Name=Ggra9683.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=945bp|location=Sequence derived from alignment at tig00000248_pilon:69264..70208- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTACCATTGCCGTGTTCCTCTTCGCCGTTCTCCGCGTCGCGCTCTC
GCAGAAGATACGCCTCCCGCAAAACACCCAAGCAGAGGGCGTCGCACATG
CGGCAGGCTCCCTCTTTTTCGCGGGCGATTTCCGTCGCGGCGGCGTTCTG
CTCGTGGATTTCGCAACAGGTTTCACAACCACAGTAGTACCAAACGTACC
CGACCGCCTGGCTACTGGTCTCGCCGCTCGAAATGGGCGCCTTTTCGCCG
CCGGCGGAGGTACTTTCGGGGCACTGACAAGTGTACCTCGTATGTTTGTG
TACGACATTGTGTCCGGGGATACCATTGCTGCCTGCGATGCCCCAGTTGG
GGCGCTTGTGAATGATGTGTTTGCTGATGACGACTTTGCGTATTATACGG
ACTCGTTCCTGGGCAATGTGTATGTGCTGCGGTTGGCTTCGCTGCCTCGA
TGTGAGCTGAGCGTGCTTGAATTGCCGCGCGAGTCTTTTGCTCTTGGGCC
TCCGTCTTTCGCTGCCAACGGAATTGTACTGTTTGCATCTGGATTGATAG
TGAGCAACACCAACTCGGGAAGCCTGTTCTTCGTTGATCTGCGTACCAAC
TCTACCCAACGAATCCTACCAGATGATAGCGTTGTAGGCGCGGGTGGCCT
GGAGATCCGCGCAGACAGAAGCGGTGGCGGAGCCACGCTTTTCGTCGCAC
AGAGCACGGCGAGTCGCATTTCAATCTGGCGTCTGTGGAAGAAAGGCGCG
GAGGTGAGTGCGCGCTTCGTGCAGAACATCACGTCGCCAGACTTCGACAC
GCCGGGAACGATCGCTGTCGGAGGTGGCCGATTGGTGGTGGGTGACCCGC
GCTTCAGCACACTGCCGCCCACCCGAGTGTTACCGGATGGGGCGCGGTCT
TTGCTGTTTGGTTTCAGAATTCGTCGAGAGCGCCATTCCAAATGA
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protein sequence of Ggra9683.t1

>Ggra9683.t1 ID=Ggra9683.t1|Name=Ggra9683.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=315bp
MSTIAVFLFAVLRVALSQKIRLPQNTQAEGVAHAAGSLFFAGDFRRGGVL
LVDFATGFTTTVVPNVPDRLATGLAARNGRLFAAGGGTFGALTSVPRMFV
YDIVSGDTIAACDAPVGALVNDVFADDDFAYYTDSFLGNVYVLRLASLPR
CELSVLELPRESFALGPPSFAANGIVLFASGLIVSNTNSGSLFFVDLRTN
STQRILPDDSVVGAGGLEIRADRSGGGATLFVAQSTASRISIWRLWKKGA
EVSARFVQNITSPDFDTPGTIAVGGGRLVVGDPRFSTLPPTRVLPDGARS
LLFGFRIRRERHSK*
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mRNA from alignment at tig00000248_pilon:69264..70208-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9683.t1 ID=Ggra9683.t1|Name=Ggra9683.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=945bp|location=Sequence derived from alignment at tig00000248_pilon:69264..70208- (Gracilaria gracilis GNS1m male)
ATGAGTACCATTGCCGTGTTCCTCTTCGCCGTTCTCCGCGTCGCGCTCTC
GCAGAAGATACGCCTCCCGCAAAACACCCAAGCAGAGGGCGTCGCACATG
CGGCAGGCTCCCTCTTTTTCGCGGGCGATTTCCGTCGCGGCGGCGTTCTG
CTCGTGGATTTCGCAACAGGTTTCACAACCACAGTAGTACCAAACGTACC
CGACCGCCTGGCTACTGGTCTCGCCGCTCGAAATGGGCGCCTTTTCGCCG
CCGGCGGAGGTACTTTCGGGGCACTGACAAGTGTACCTCGTATGTTTGTG
TACGACATTGTGTCCGGGGATACCATTGCTGCCTGCGATGCCCCAGTTGG
GGCGCTTGTGAATGATGTGTTTGCTGATGACGACTTTGCGTATTATACGG
ACTCGTTCCTGGGCAATGTGTATGTGCTGCGGTTGGCTTCGCTGCCTCGA
TGTGAGCTGAGCGTGCTTGAATTGCCGCGCGAGTCTTTTGCTCTTGGGCC
TCCGTCTTTCGCTGCCAACGGAATTGTACTGTTTGCATCTGGATTGATAG
TGAGCAACACCAACTCGGGAAGCCTGTTCTTCGTTGATCTGCGTACCAAC
TCTACCCAACGAATCCTACCAGATGATAGCGTTGTAGGCGCGGGTGGCCT
GGAGATCCGCGCAGACAGAAGCGGTGGCGGAGCCACGCTTTTCGTCGCAC
AGAGCACGGCGAGTCGCATTTCAATCTGGCGTCTGTGGAAGAAAGGCGCG
GAGGTGAGTGCGCGCTTCGTGCAGAACATCACGTCGCCAGACTTCGACAC
GCCGGGAACGATCGCTGTCGGAGGTGGCCGATTGGTGGTGGGTGACCCGC
GCTTCAGCACACTGCCGCCCACCCGAGTGTTACCGGATGGGGCGCGGTCT
TTGCTGTTTGGTTTCAGAATTCGTCGAGAGCGCCATTCCAAATGA
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Coding sequence (CDS) from alignment at tig00000248_pilon:69264..70208-

>Ggra9683.t1 ID=Ggra9683.t1|Name=Ggra9683.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=945bp|location=Sequence derived from alignment at tig00000248_pilon:69264..70208- (Gracilaria gracilis GNS1m male)
ATGAGTACCATTGCCGTGTTCCTCTTCGCCGTTCTCCGCGTCGCGCTCTC
GCAGAAGATACGCCTCCCGCAAAACACCCAAGCAGAGGGCGTCGCACATG
CGGCAGGCTCCCTCTTTTTCGCGGGCGATTTCCGTCGCGGCGGCGTTCTG
CTCGTGGATTTCGCAACAGGTTTCACAACCACAGTAGTACCAAACGTACC
CGACCGCCTGGCTACTGGTCTCGCCGCTCGAAATGGGCGCCTTTTCGCCG
CCGGCGGAGGTACTTTCGGGGCACTGACAAGTGTACCTCGTATGTTTGTG
TACGACATTGTGTCCGGGGATACCATTGCTGCCTGCGATGCCCCAGTTGG
GGCGCTTGTGAATGATGTGTTTGCTGATGACGACTTTGCGTATTATACGG
ACTCGTTCCTGGGCAATGTGTATGTGCTGCGGTTGGCTTCGCTGCCTCGA
TGTGAGCTGAGCGTGCTTGAATTGCCGCGCGAGTCTTTTGCTCTTGGGCC
TCCGTCTTTCGCTGCCAACGGAATTGTACTGTTTGCATCTGGATTGATAG
TGAGCAACACCAACTCGGGAAGCCTGTTCTTCGTTGATCTGCGTACCAAC
TCTACCCAACGAATCCTACCAGATGATAGCGTTGTAGGCGCGGGTGGCCT
GGAGATCCGCGCAGACAGAAGCGGTGGCGGAGCCACGCTTTTCGTCGCAC
AGAGCACGGCGAGTCGCATTTCAATCTGGCGTCTGTGGAAGAAAGGCGCG
GAGGTGAGTGCGCGCTTCGTGCAGAACATCACGTCGCCAGACTTCGACAC
GCCGGGAACGATCGCTGTCGGAGGTGGCCGATTGGTGGTGGGTGACCCGC
GCTTCAGCACACTGCCGCCCACCCGAGTGTTACCGGATGGGGCGCGGTCT
TTGCTGTTTGGTTTCAGAATTCGTCGAGAGCGCCATTCCAAATGA
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