Ggra9672.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9672.t1
Unique NameGgra9672.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length314
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000107_piloncontigtig00000107_pilon:76051..76992 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog745277.GRAQ_01239
PFAMsSulfotransfer_2
Max annot lvl1236|Gammaproteobacteria
Evalue0.00012
EggNOG OGs2E8WJ@1|root,3336S@2|Bacteria,1N8M8@1224|Proteobacteria,1SH2S@1236|Gammaproteobacteria
DescriptionSulfotransferase family
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9672Ggra9672Gracilaria gracilis GNS1m malegenetig00000107_pilon 76051..76992 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9672.t1.stop1Ggra9672.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000107_pilon 76051..76053 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9672.t1.CDS1Ggra9672.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000107_pilon 76051..76992 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9672.t1.exon1Ggra9672.t1.exon1Gracilaria gracilis GNS1m maleexontig00000107_pilon 76051..76992 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9672.t1.start1Ggra9672.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000107_pilon 76990..76992 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9672.t1Ggra9672.t1Gracilaria gracilis GNS1m malepolypeptidetig00000107_pilon 76051..76992 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9672.t1 ID=Ggra9672.t1|Name=Ggra9672.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=314bp
MFNALVPSQAPGCKTYTILLMSALLLTVPLVTLMHIKTHPQLTELPTTRL
SPNVHELLTDDDLLDEICDSRNFAYFPVADLLVASIAKGGSTSVFQFLYE
GITGEKDHSHSRCGTNVQDLHSDCWESRAVYLQNFTNEERRRILTSPSTI
RMAIQRDPFDRILSAFNDKFACITKTFNVDLGYSFIVPYTRELAGLPASP
RKCMNISEYATALDLIRESLPVPLQQLDVHIRPQQLYFDYIPYDMVLDVS
ELSNSSLLHAIMDRLPFRDLVEDGIGHRHAVERAELMIPEDAARKLYRFA
MESHMGERRHLLS*
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spliced messenger RNA

>Ggra9672.t1 ID=Ggra9672.t1|Name=Ggra9672.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=942bp|location=Sequence derived from alignment at tig00000107_pilon:76051..76992- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTAACGCTCTCGTCCCCTCTCAAGCACCGGGCTGCAAAACATACAC
CATTCTCTTGATGTCTGCTCTTCTTCTCACAGTACCGCTCGTCACGCTCA
TGCACATCAAGACGCACCCGCAGTTGACCGAACTCCCCACCACGAGGCTT
TCTCCGAACGTTCACGAGTTGCTCACCGACGACGATCTGCTCGATGAAAT
CTGCGACAGCCGCAACTTTGCCTACTTTCCAGTCGCCGATCTTTTGGTCG
CCTCCATCGCAAAAGGAGGAAGTACTTCCGTTTTTCAGTTTCTCTACGAG
GGCATCACTGGGGAGAAGGACCATTCGCATAGTCGTTGTGGCACAAATGT
GCAGGACCTGCACTCAGACTGTTGGGAGTCGCGAGCAGTTTATCTGCAGA
ACTTTACCAATGAGGAACGCCGTCGAATTTTGACCTCCCCGTCTACGATA
CGCATGGCAATACAACGCGATCCGTTTGACCGAATCCTCTCGGCATTCAA
TGACAAATTCGCGTGCATCACCAAGACCTTTAACGTCGATTTGGGTTACA
GCTTCATCGTACCGTACACAAGAGAGCTCGCCGGCCTGCCAGCCTCGCCG
AGGAAGTGCATGAACATCAGCGAATACGCAACGGCTCTGGACCTCATACG
AGAAAGTCTGCCCGTCCCACTACAGCAGCTTGACGTTCACATTCGCCCGC
AGCAACTCTACTTCGATTACATTCCATACGACATGGTTCTGGATGTTTCA
GAGTTGTCCAACTCCAGCTTGCTTCATGCTATCATGGATCGCCTACCCTT
TCGAGATCTGGTGGAAGATGGAATTGGACATCGACACGCTGTAGAGCGGG
CTGAATTGATGATCCCCGAGGACGCTGCCAGGAAGTTGTATCGCTTTGCA
ATGGAGTCGCACATGGGCGAACGGCGGCATCTGTTGTCTTGA
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protein sequence of Ggra9672.t1

>Ggra9672.t1 ID=Ggra9672.t1|Name=Ggra9672.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=314bp
MFNALVPSQAPGCKTYTILLMSALLLTVPLVTLMHIKTHPQLTELPTTRL
SPNVHELLTDDDLLDEICDSRNFAYFPVADLLVASIAKGGSTSVFQFLYE
GITGEKDHSHSRCGTNVQDLHSDCWESRAVYLQNFTNEERRRILTSPSTI
RMAIQRDPFDRILSAFNDKFACITKTFNVDLGYSFIVPYTRELAGLPASP
RKCMNISEYATALDLIRESLPVPLQQLDVHIRPQQLYFDYIPYDMVLDVS
ELSNSSLLHAIMDRLPFRDLVEDGIGHRHAVERAELMIPEDAARKLYRFA
MESHMGERRHLLS*
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mRNA from alignment at tig00000107_pilon:76051..76992-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9672.t1 ID=Ggra9672.t1|Name=Ggra9672.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=942bp|location=Sequence derived from alignment at tig00000107_pilon:76051..76992- (Gracilaria gracilis GNS1m male)
ATGTTTAACGCTCTCGTCCCCTCTCAAGCACCGGGCTGCAAAACATACAC
CATTCTCTTGATGTCTGCTCTTCTTCTCACAGTACCGCTCGTCACGCTCA
TGCACATCAAGACGCACCCGCAGTTGACCGAACTCCCCACCACGAGGCTT
TCTCCGAACGTTCACGAGTTGCTCACCGACGACGATCTGCTCGATGAAAT
CTGCGACAGCCGCAACTTTGCCTACTTTCCAGTCGCCGATCTTTTGGTCG
CCTCCATCGCAAAAGGAGGAAGTACTTCCGTTTTTCAGTTTCTCTACGAG
GGCATCACTGGGGAGAAGGACCATTCGCATAGTCGTTGTGGCACAAATGT
GCAGGACCTGCACTCAGACTGTTGGGAGTCGCGAGCAGTTTATCTGCAGA
ACTTTACCAATGAGGAACGCCGTCGAATTTTGACCTCCCCGTCTACGATA
CGCATGGCAATACAACGCGATCCGTTTGACCGAATCCTCTCGGCATTCAA
TGACAAATTCGCGTGCATCACCAAGACCTTTAACGTCGATTTGGGTTACA
GCTTCATCGTACCGTACACAAGAGAGCTCGCCGGCCTGCCAGCCTCGCCG
AGGAAGTGCATGAACATCAGCGAATACGCAACGGCTCTGGACCTCATACG
AGAAAGTCTGCCCGTCCCACTACAGCAGCTTGACGTTCACATTCGCCCGC
AGCAACTCTACTTCGATTACATTCCATACGACATGGTTCTGGATGTTTCA
GAGTTGTCCAACTCCAGCTTGCTTCATGCTATCATGGATCGCCTACCCTT
TCGAGATCTGGTGGAAGATGGAATTGGACATCGACACGCTGTAGAGCGGG
CTGAATTGATGATCCCCGAGGACGCTGCCAGGAAGTTGTATCGCTTTGCA
ATGGAGTCGCACATGGGCGAACGGCGGCATCTGTTGTCTTGA
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Coding sequence (CDS) from alignment at tig00000107_pilon:76051..76992-

>Ggra9672.t1 ID=Ggra9672.t1|Name=Ggra9672.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=942bp|location=Sequence derived from alignment at tig00000107_pilon:76051..76992- (Gracilaria gracilis GNS1m male)
ATGTTTAACGCTCTCGTCCCCTCTCAAGCACCGGGCTGCAAAACATACAC
CATTCTCTTGATGTCTGCTCTTCTTCTCACAGTACCGCTCGTCACGCTCA
TGCACATCAAGACGCACCCGCAGTTGACCGAACTCCCCACCACGAGGCTT
TCTCCGAACGTTCACGAGTTGCTCACCGACGACGATCTGCTCGATGAAAT
CTGCGACAGCCGCAACTTTGCCTACTTTCCAGTCGCCGATCTTTTGGTCG
CCTCCATCGCAAAAGGAGGAAGTACTTCCGTTTTTCAGTTTCTCTACGAG
GGCATCACTGGGGAGAAGGACCATTCGCATAGTCGTTGTGGCACAAATGT
GCAGGACCTGCACTCAGACTGTTGGGAGTCGCGAGCAGTTTATCTGCAGA
ACTTTACCAATGAGGAACGCCGTCGAATTTTGACCTCCCCGTCTACGATA
CGCATGGCAATACAACGCGATCCGTTTGACCGAATCCTCTCGGCATTCAA
TGACAAATTCGCGTGCATCACCAAGACCTTTAACGTCGATTTGGGTTACA
GCTTCATCGTACCGTACACAAGAGAGCTCGCCGGCCTGCCAGCCTCGCCG
AGGAAGTGCATGAACATCAGCGAATACGCAACGGCTCTGGACCTCATACG
AGAAAGTCTGCCCGTCCCACTACAGCAGCTTGACGTTCACATTCGCCCGC
AGCAACTCTACTTCGATTACATTCCATACGACATGGTTCTGGATGTTTCA
GAGTTGTCCAACTCCAGCTTGCTTCATGCTATCATGGATCGCCTACCCTT
TCGAGATCTGGTGGAAGATGGAATTGGACATCGACACGCTGTAGAGCGGG
CTGAATTGATGATCCCCGAGGACGCTGCCAGGAAGTTGTATCGCTTTGCA
ATGGAGTCGCACATGGGCGAACGGCGGCATCTGTTGTCTTGA
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