Ggra9668.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9668.t1
Unique NameGgra9668.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length233
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000107_piloncontigtig00000107_pilon:32128..33047 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9668Ggra9668Gracilaria gracilis GNS1m malegenetig00000107_pilon 32128..33047 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9668.t1Ggra9668.t1Gracilaria gracilis GNS1m malepolypeptidetig00000107_pilon 32128..33047 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9668.t1.start1Ggra9668.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000107_pilon 32128..32130 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9668.t1.CDS1Ggra9668.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000107_pilon 32128..32320 +
Ggra9668.t1.CDS2Ggra9668.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000107_pilon 32399..32841 +
Ggra9668.t1.CDS3Ggra9668.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000107_pilon 32985..33047 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9668.t1.exon1Ggra9668.t1.exon1Gracilaria gracilis GNS1m maleexontig00000107_pilon 32128..32320 +
Ggra9668.t1.exon2Ggra9668.t1.exon2Gracilaria gracilis GNS1m maleexontig00000107_pilon 32399..32841 +
Ggra9668.t1.exon3Ggra9668.t1.exon3Gracilaria gracilis GNS1m maleexontig00000107_pilon 32985..33047 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9668.t1.intron1Ggra9668.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000107_pilon 32321..32398 +
Ggra9668.t1.intron2Ggra9668.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000107_pilon 32842..32984 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9668.t1.stop1Ggra9668.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000107_pilon 33045..33047 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9668.t1 ID=Ggra9668.t1|Name=Ggra9668.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=233bp
MVLSIPSSAPLPLFPTPPPPIDTTFRQKDSCVVPFVVGGRGAATGFDTIL
GDIPEESSVQDSDNASDVNEFQPPFDVDPGIDSNIQAEGVLTILDVPATC
VPLATTQTNSHYISCNPMEIIDGSMDVSGTGGIAVPMGGSEETLLPSPEG
TMGDTEAGTVIGGNGGIGGGGGSGGSGSANGILASGGIGGGGAAFSAFGA
LGSGGSGNAASGKDSELILLYGLLVSLTKIGS*
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spliced messenger RNA

>Ggra9668.t1 ID=Ggra9668.t1|Name=Ggra9668.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=699bp|location=Sequence derived from alignment at tig00000107_pilon:32128..33047+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTCTTTCAATACCGTCATCAGCCCCCCTACCTCTCTTCCCAACTCC
TCCACCGCCTATTGATACTACTTTTCGGCAAAAGGATTCATGTGTTGTTC
CCTTTGTTGTGGGTGGAAGAGGCGCCGCAACCGGTTTTGATACTATCCTT
GGAGATATTCCAGAAGAATCTTCAGTCCAAGACAGTGATAATGCTTCAGA
CGTGAATGAATTTCAACCGCCTTTCGATGTGGATCCTGGGATTGACAGCA
ATATCCAAGCGGAAGGAGTTCTGACAATTCTAGATGTTCCTGCTACCTGC
GTTCCTCTAGCAACTACGCAAACGAACAGCCACTACATTTCTTGTAATCC
TATGGAGATTATTGATGGTTCAATGGATGTTTCTGGCACAGGTGGGATCG
CTGTGCCGATGGGGGGTTCGGAAGAAACGCTGTTGCCGAGCCCCGAAGGA
ACAATGGGTGATACTGAGGCTGGGACAGTAATtggtggaaatggtggaat
tggtggaggtggtggaagtggtggaagtggtAGTGCAAATGGTATATTAG
CAAGTGGCGGAATTGGAGGTGGAGGTGCCGCATTTTCGGCATTTGGAGCT
CTTGGAAGTGGTGGAAGTGGTAATGCAGCAAGTGGTAAGGATTCGGAGCT
TATCCTGTTGTATGGCTTGCTCGTTTCACTGACTAAAATTGGTTCATGA
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protein sequence of Ggra9668.t1

>Ggra9668.t1 ID=Ggra9668.t1|Name=Ggra9668.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=233bp
MVLSIPSSAPLPLFPTPPPPIDTTFRQKDSCVVPFVVGGRGAATGFDTIL
GDIPEESSVQDSDNASDVNEFQPPFDVDPGIDSNIQAEGVLTILDVPATC
VPLATTQTNSHYISCNPMEIIDGSMDVSGTGGIAVPMGGSEETLLPSPEG
TMGDTEAGTVIGGNGGIGGGGGSGGSGSANGILASGGIGGGGAAFSAFGA
LGSGGSGNAASGKDSELILLYGLLVSLTKIGS*
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mRNA from alignment at tig00000107_pilon:32128..33047+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9668.t1 ID=Ggra9668.t1|Name=Ggra9668.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=920bp|location=Sequence derived from alignment at tig00000107_pilon:32128..33047+ (Gracilaria gracilis GNS1m male)
ATGGTTCTTTCAATACCGTCATCAGCCCCCCTACCTCTCTTCCCAACTCC
TCCACCGCCTATTGATACTACTTTTCGGCAAAAGGATTCATGTGTTGTTC
CCTTTGTTGTGGGTGGAAGAGGCGCCGCAACCGGTTTTGATACTATCCTT
GGAGATATTCCAGAAGAATCTTCAGTCCAAGACAGTGATAATGGTATCCT
CTTAACTTTGGGTTGTGTGGACGACATGTGCATATCGGAAGATCAAAAAC
CGTTCAATTAGGACATCTCAGCTTCAGACGTGAATGAATTTCAACCGCCT
TTCGATGTGGATCCTGGGATTGACAGCAATATCCAAGCGGAAGGAGTTCT
GACAATTCTAGATGTTCCTGCTACCTGCGTTCCTCTAGCAACTACGCAAA
CGAACAGCCACTACATTTCTTGTAATCCTATGGAGATTATTGATGGTTCA
ATGGATGTTTCTGGCACAGGTGGGATCGCTGTGCCGATGGGGGGTTCGGA
AGAAACGCTGTTGCCGAGCCCCGAAGGAACAATGGGTGATACTGAGGCTG
GGACAGTAATtggtggaaatggtggaattggtggaggtggtggaagtggt
ggaagtggtAGTGCAAATGGTATATTAGCAAGTGGCGGAATTGGAGGTGG
AGGTGCCGCATTTTCGGCATTTGGAGCTCTTGGAAGTGGTGGAAGTGGTA
ATGCAGCAAGTGGTGTAAGTGGTAGTGCAAATGGTATATTTGCCAATGCC
GGAATTGGAGGTGGAAGTGGAGGTGCCATATTTTCGGCAAGCCTTGGAGC
GGGCTTTGGAAGACAGTTTGGCACCTGCTGTCGTCCGTGTTCCTATCGGA
TCCACAGAAGGATTCGGAGCTTATCCTGTTGTATGGCTTGCTCGTTTCAC
TGACTAAAATTGGTTCATGA
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Coding sequence (CDS) from alignment at tig00000107_pilon:32128..33047+

>Ggra9668.t1 ID=Ggra9668.t1|Name=Ggra9668.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=699bp|location=Sequence derived from alignment at tig00000107_pilon:32128..33047+ (Gracilaria gracilis GNS1m male)
ATGGTTCTTTCAATACCGTCATCAGCCCCCCTACCTCTCTTCCCAACTCC
TCCACCGCCTATTGATACTACTTTTCGGCAAAAGGATTCATGTGTTGTTC
CCTTTGTTGTGGGTGGAAGAGGCGCCGCAACCGGTTTTGATACTATCCTT
GGAGATATTCCAGAAGAATCTTCAGTCCAAGACAGTGATAATGCTTCAGA
CGTGAATGAATTTCAACCGCCTTTCGATGTGGATCCTGGGATTGACAGCA
ATATCCAAGCGGAAGGAGTTCTGACAATTCTAGATGTTCCTGCTACCTGC
GTTCCTCTAGCAACTACGCAAACGAACAGCCACTACATTTCTTGTAATCC
TATGGAGATTATTGATGGTTCAATGGATGTTTCTGGCACAGGTGGGATCG
CTGTGCCGATGGGGGGTTCGGAAGAAACGCTGTTGCCGAGCCCCGAAGGA
ACAATGGGTGATACTGAGGCTGGGACAGTAATtggtggaaatggtggaat
tggtggaggtggtggaagtggtggaagtggtAGTGCAAATGGTATATTAG
CAAGTGGCGGAATTGGAGGTGGAGGTGCCGCATTTTCGGCATTTGGAGCT
CTTGGAAGTGGTGGAAGTGGTAATGCAGCAAGTGGTAAGGATTCGGAGCT
TATCCTGTTGTATGGCTTGCTCGTTTCACTGACTAAAATTGGTTCATGA
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