Ggra9651.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9651.t1
Unique NameGgra9651.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length311
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000266_piloncontigtig00000266_pilon:42497..43429 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3649.evm.model.supercontig_182.23
PFAMsCarb_anhydrase
Max annot lvl35493|Streptophyta
KEGG rclassRC02807
KEGG koko:K01674
KEGG ReactionR00132,R10092
KEGG Pathwayko00910,map00910
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0016020,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
Evalue2.99e-31
EggNOG OGsCOG3338@1|root,KOG0382@2759|Eukaryota,37Q68@33090|Viridiplantae,3GGWD@35493|Streptophyta,3HN8R@3699|Brassicales
EC4.2.1.1
DescriptionAlpha carbonic anhydrase
COG categoryP
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9651Ggra9651Gracilaria gracilis GNS1m malegenetig00000266_pilon 42497..43429 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9651.t1.start1Ggra9651.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000266_pilon 42497..42499 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9651.t1.CDS1Ggra9651.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000266_pilon 42497..43429 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9651.t1.exon1Ggra9651.t1.exon1Gracilaria gracilis GNS1m maleexontig00000266_pilon 42497..43429 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9651.t1.stop1Ggra9651.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000266_pilon 43427..43429 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9651.t1Ggra9651.t1Gracilaria gracilis GNS1m malepolypeptidetig00000266_pilon 42497..43429 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9651.t1 ID=Ggra9651.t1|Name=Ggra9651.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=311bp
MMSTLLPIALLLVLCLTSDAAASASATTVRQEESPASFSYDQSAPNGPPM
WHTLDDSYTVCGTGRAQSPINFPCPAGVADHQVLQHGPQVSTTNAHLHME
GTTHNFELACEQKGSCGMTTFDGVKYDLVNVHFHSPSEHHVGGVAYPLEA
HMVHASSDGALLVLSVMFSYGADGDCITTAPFPSGSHGTLTSILTRARVG
ITDLVVNTGSFLAADTSFSMYSGSLTTPPCTEGVTWLLANRRQTISPRQV
QQFLSMTDSAQFGNARNVHQRNGRPLSFAPTDSGRSPLLASLPRSLAGLP
RSLADLALFS*
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spliced messenger RNA

>Ggra9651.t1 ID=Ggra9651.t1|Name=Ggra9651.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=933bp|location=Sequence derived from alignment at tig00000266_pilon:42497..43429+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGTCGACCCTGCTGCCGATCGCGTTGCTTCTCGTGCTGTGCCTCAC
ATCGGACGCCGCAGCGAGCGCAAGCGCGACGACCGTGCGACAAGAAGAGT
CACCGGCTTCTTTTTCCTACGACCAATCGGCGCCTAATGGGCCTCCCATG
TGGCATACTCTAGACGACAGTTACACCGTCTGCGGCACCGGCCGTGCGCA
AAGTCCCATCAACTTCCCGTGCCCCGCCGGCGTCGCGGACCACCAAGTGT
TGCAGCACGGCCCGCAAGTGTCCACCACCAACGCACATCTGCACATGGAG
GGCACCACGCACAATTTTGAGCTCGCTTGTGAACAGAAGGGAAGCTGCGG
CATGACAACGTTCGACGGCGTCAAGTACGACTTGGTGAACGTTCACTTCC
ACTCGCCGAGCGAACACCATGTGGGAGGGGTTGCGTACCCTCTGGAAGCA
CATATGGTGCACGCCTCATCTGACGGCGCGCTTCTGGTTCTTTCAGTCAT
GTTCTCGTACGGTGCAGACGGTGACTGTATCACAACGGCGCCGTTTCCGA
GTGGAAGCCATGGCACGCTGACGTCCATTCTGACGCGGGCCAGAGTGGGC
ATTACGGATCTCGTGGTGAACACCGGGTCGTTCTTGGCAGCTGATACGTC
ATTCAGTATGTATTCTGGCTCACTCACCACACCGCCTTGCACAGAGGGGG
TGACATGGCTGCTGGCAAACAGAAGGCAGACCATATCGCCTCGCCAGGTG
CAACAGTTCCTTTCCATGACCGACAGTGCGCAGTTTGGAAATGCCAGGAA
TGTTCACCAAAGGAATGGGCGCCCGCTTTCTTTCGCGCCAACGGACAGTG
GAAGGTCGCCACTACTGGCGAGTCTTCCCAGATCTCTGGCGGGTCTTCCC
AGATCTCTGGCCGATCTGGCTCTATTTTCGTGA
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protein sequence of Ggra9651.t1

>Ggra9651.t1 ID=Ggra9651.t1|Name=Ggra9651.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=311bp
MMSTLLPIALLLVLCLTSDAAASASATTVRQEESPASFSYDQSAPNGPPM
WHTLDDSYTVCGTGRAQSPINFPCPAGVADHQVLQHGPQVSTTNAHLHME
GTTHNFELACEQKGSCGMTTFDGVKYDLVNVHFHSPSEHHVGGVAYPLEA
HMVHASSDGALLVLSVMFSYGADGDCITTAPFPSGSHGTLTSILTRARVG
ITDLVVNTGSFLAADTSFSMYSGSLTTPPCTEGVTWLLANRRQTISPRQV
QQFLSMTDSAQFGNARNVHQRNGRPLSFAPTDSGRSPLLASLPRSLAGLP
RSLADLALFS*
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mRNA from alignment at tig00000266_pilon:42497..43429+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9651.t1 ID=Ggra9651.t1|Name=Ggra9651.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=933bp|location=Sequence derived from alignment at tig00000266_pilon:42497..43429+ (Gracilaria gracilis GNS1m male)
ATGATGTCGACCCTGCTGCCGATCGCGTTGCTTCTCGTGCTGTGCCTCAC
ATCGGACGCCGCAGCGAGCGCAAGCGCGACGACCGTGCGACAAGAAGAGT
CACCGGCTTCTTTTTCCTACGACCAATCGGCGCCTAATGGGCCTCCCATG
TGGCATACTCTAGACGACAGTTACACCGTCTGCGGCACCGGCCGTGCGCA
AAGTCCCATCAACTTCCCGTGCCCCGCCGGCGTCGCGGACCACCAAGTGT
TGCAGCACGGCCCGCAAGTGTCCACCACCAACGCACATCTGCACATGGAG
GGCACCACGCACAATTTTGAGCTCGCTTGTGAACAGAAGGGAAGCTGCGG
CATGACAACGTTCGACGGCGTCAAGTACGACTTGGTGAACGTTCACTTCC
ACTCGCCGAGCGAACACCATGTGGGAGGGGTTGCGTACCCTCTGGAAGCA
CATATGGTGCACGCCTCATCTGACGGCGCGCTTCTGGTTCTTTCAGTCAT
GTTCTCGTACGGTGCAGACGGTGACTGTATCACAACGGCGCCGTTTCCGA
GTGGAAGCCATGGCACGCTGACGTCCATTCTGACGCGGGCCAGAGTGGGC
ATTACGGATCTCGTGGTGAACACCGGGTCGTTCTTGGCAGCTGATACGTC
ATTCAGTATGTATTCTGGCTCACTCACCACACCGCCTTGCACAGAGGGGG
TGACATGGCTGCTGGCAAACAGAAGGCAGACCATATCGCCTCGCCAGGTG
CAACAGTTCCTTTCCATGACCGACAGTGCGCAGTTTGGAAATGCCAGGAA
TGTTCACCAAAGGAATGGGCGCCCGCTTTCTTTCGCGCCAACGGACAGTG
GAAGGTCGCCACTACTGGCGAGTCTTCCCAGATCTCTGGCGGGTCTTCCC
AGATCTCTGGCCGATCTGGCTCTATTTTCGTGA
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Coding sequence (CDS) from alignment at tig00000266_pilon:42497..43429+

>Ggra9651.t1 ID=Ggra9651.t1|Name=Ggra9651.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=933bp|location=Sequence derived from alignment at tig00000266_pilon:42497..43429+ (Gracilaria gracilis GNS1m male)
ATGATGTCGACCCTGCTGCCGATCGCGTTGCTTCTCGTGCTGTGCCTCAC
ATCGGACGCCGCAGCGAGCGCAAGCGCGACGACCGTGCGACAAGAAGAGT
CACCGGCTTCTTTTTCCTACGACCAATCGGCGCCTAATGGGCCTCCCATG
TGGCATACTCTAGACGACAGTTACACCGTCTGCGGCACCGGCCGTGCGCA
AAGTCCCATCAACTTCCCGTGCCCCGCCGGCGTCGCGGACCACCAAGTGT
TGCAGCACGGCCCGCAAGTGTCCACCACCAACGCACATCTGCACATGGAG
GGCACCACGCACAATTTTGAGCTCGCTTGTGAACAGAAGGGAAGCTGCGG
CATGACAACGTTCGACGGCGTCAAGTACGACTTGGTGAACGTTCACTTCC
ACTCGCCGAGCGAACACCATGTGGGAGGGGTTGCGTACCCTCTGGAAGCA
CATATGGTGCACGCCTCATCTGACGGCGCGCTTCTGGTTCTTTCAGTCAT
GTTCTCGTACGGTGCAGACGGTGACTGTATCACAACGGCGCCGTTTCCGA
GTGGAAGCCATGGCACGCTGACGTCCATTCTGACGCGGGCCAGAGTGGGC
ATTACGGATCTCGTGGTGAACACCGGGTCGTTCTTGGCAGCTGATACGTC
ATTCAGTATGTATTCTGGCTCACTCACCACACCGCCTTGCACAGAGGGGG
TGACATGGCTGCTGGCAAACAGAAGGCAGACCATATCGCCTCGCCAGGTG
CAACAGTTCCTTTCCATGACCGACAGTGCGCAGTTTGGAAATGCCAGGAA
TGTTCACCAAAGGAATGGGCGCCCGCTTTCTTTCGCGCCAACGGACAGTG
GAAGGTCGCCACTACTGGCGAGTCTTCCCAGATCTCTGGCGGGTCTTCCC
AGATCTCTGGCCGATCTGGCTCTATTTTCGTGA
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