Ggra9543.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9543.t1
Unique Name	Ggra9543.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	565

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000150_pilon	contig	tig00000150_pilon:16746..18440 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9543	Ggra9543	Gracilaria gracilis GNS1m male	gene	tig00000150_pilon 16746..18440 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9543.t1.start1	Ggra9543.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000150_pilon 16746..16748 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9543.t1.CDS1	Ggra9543.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000150_pilon 16746..18440 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9543.t1.exon1	Ggra9543.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000150_pilon 16746..18440 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9543.t1.stop1	Ggra9543.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000150_pilon 18438..18440 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9543.t1	Ggra9543.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000150_pilon 16746..18440 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000150_pilon:16746..18440+
coding sequence from alignment at tig00000150_pilon:16746..18440+

mRNA sequence

>Ggra9543.t1 ID=Ggra9543.t1|Name=Ggra9543.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=565bp
MSPSPYLLSLSDDALAVHDQSLRVVEPSDLHSDAVAAFSSSSNAVAIASS
PSWNASHVTVFTHSGRRQLETAASRVTKLALCPNTTFVALADADNTVQLL
NVHSHQSGQFSLSSRVLSLSFDSQSTLLSVCTSKTIILISLPTLRQISEI
TPTSATRSFPRASTLRTCLTSAAISPLHSLLASSDDTGCVTVYDISVPST
PHTHARFTSALRTPATTMCFSSTGILAVAGFDKHIRLYDSHLKTLLFSIA
ITARPTALAFRENVIAVATTNSTISLIEADVNENSFVYNARTETSESHTT
ALLLCPPSVSLSTVPTSADHSPKQDVDPLSQTFSDVESFLSRLPPLPPDK
QSKQAQSSKRLHQRRSLPLLSKQESDMHCEQVRAAQLPPHLSASFLTDEQ
GSPPSSAGTASPVSRSVSRKHSQNRQDDTDSFVERDCSPEGSPLLRSVSG
QGASVDRRRRSEEFFNIGAPVLRRAGVGKVPEGEQENEVMNLFRNVLRQE
MDVIRTDLHNDIVSIHSELVLLASAQSRELKEVVKERDEKVMRLETEVRR
LKADNLRLRKKYGL*

spliced messenger RNA

>Ggra9543.t1 ID=Ggra9543.t1|Name=Ggra9543.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1695bp|location=Sequence derived from alignment at tig00000150_pilon:16746..18440+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCCCTCTCCTTACCTTCTTTCTCTGTCGGACGATGCGCTTGCCGT
TCATGACCAGTCGCTGCGAGTCGTTGAGCCGTCCGACTTGCATAGCGATG
CTGTGGCCGCGTTTTCTTCCAGCTCGAATGCGGTCGCCATTGCGTCGTCG
CCTTCGTGGAACGCTAGTCATGTCACTGTTTTTACCCACAGTGGCCGCCG
TCAACTTGAAACCGCTGCGTCGCGCGTCACCAAGCTTGCGCTATGCCCTA
ACACTACGTTCGTAGCGCTTGCGGACGCCGATAACACCGTGCAACTGCTC
AATGTTCACTCGCATCAAAGCGGCCAGTTCTCGCTTTCCTCGCGTGTCCT
CTCTCTATCTTTCGATTCGCAAAGCACATTGTTAAGCGTGTGTACATCGA
AAACAATCATCTTGATATCTCTTCCAACACTGCGACAAATCTCAGAGATA
ACGCCCACCTCCGCCACACGCTCATTCCCACGCGCCTCAACGCTTCGAAC
ATGTTTAACGAGCGCTGCCATCTCTCCATTACATTCTCTGCTAGCAAGCA
GTGACGACACCGGCTGCGTCACCGTGTACGACATAAGCGTCCCATCAACA
CCACACACGCACGCCCGATTCACCAGCGCGCTGCGAACGCCCGCAACCAC
AATGTGCTTCTCCTCTACCGGCATACTAGCCGTCGCCGGCTTCGACAAAC
ACATTCGTCTATACGATTCGCACCTCAAAACGCTCTTGTTTTCAATCGCC
ATTACTGCGCGTCCCACTGCGCTTGCCTTTCGCGAAAACGTCATTGCGGT
CGCTACCACCAACTCTACCATTTCGCTCATCGAAGCGGACGTCAACGAAA
ACTCCTTCGTGTACAACGCGCGTACCGAAACGTCCGAATCTCACACCACA
GCGCTGTTGCTGTGCCCACCAAGCGTGTCTCTTTCAACCGTGCCCACATC
TGCGGACCATTCACCAAAACAAGACGTCGATCCGCTGTCACAAACGTTTT
CAGACGTAGAGAGTTTTCTGTCGAGACTACCACCGCTCCCGCCTGACAAA
CAATCAAAACAGGCACAATCATCGAAGCGGTTGCATCAACGTCGATCGTT
ACCGCTGCTTTCAAAGCAGGAGAGCGATATGCATTGCGAGCAAGTGAGAG
CGGCGCAGCTGCCGCCTCACCTGAGCGCGAGCTTTCTGACGGATGAGCAA
GGATCCCCGCCCTCGTCAGCGGGGACTGCTTCTCCTGTGTCACGCTCCGT
CTCGCGGAAACATTCACAGAACCGGCAGGATGATACGGACAGTTTTGTAG
AGAGAGATTGCTCGCCAGAAGGCTCACCGTTGCTGAGATCGGTTTCTGGA
CAGGGTGCGTCTGTAGACAGAAGAAGAAGATCTGAAGAATTTTTCAATAT
CGGAGCACCTGTTTTAAGAAGAGCCGGTGTGGGAAAGGTTCCTGAAGGGG
AGCAGGAAAATGAGGTGATGAACTTGTTTAGAAATGTATTGCGACAAGAG
ATGGATGTGATTCGTACCGATCTGCACAATGACATTGTTAGTATTCATTC
CGAACTTGTTCTGCTTGCCTCGGCACAGTCGAGAGAACTAAAAGAGGTTG
TGAAAGAACGAGATGAGAAAGTGATGCGACTGGAGACAGAGGTGAGACGG
TTGAAGGCGGACAACTTGAGGCTGCGAAAGAAATACGGTCTGTGA

protein sequence of Ggra9543.t1

>Ggra9543.t1 ID=Ggra9543.t1|Name=Ggra9543.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=565bp
MSPSPYLLSLSDDALAVHDQSLRVVEPSDLHSDAVAAFSSSSNAVAIASS
PSWNASHVTVFTHSGRRQLETAASRVTKLALCPNTTFVALADADNTVQLL
NVHSHQSGQFSLSSRVLSLSFDSQSTLLSVCTSKTIILISLPTLRQISEI
TPTSATRSFPRASTLRTCLTSAAISPLHSLLASSDDTGCVTVYDISVPST
PHTHARFTSALRTPATTMCFSSTGILAVAGFDKHIRLYDSHLKTLLFSIA
ITARPTALAFRENVIAVATTNSTISLIEADVNENSFVYNARTETSESHTT
ALLLCPPSVSLSTVPTSADHSPKQDVDPLSQTFSDVESFLSRLPPLPPDK
QSKQAQSSKRLHQRRSLPLLSKQESDMHCEQVRAAQLPPHLSASFLTDEQ
GSPPSSAGTASPVSRSVSRKHSQNRQDDTDSFVERDCSPEGSPLLRSVSG
QGASVDRRRRSEEFFNIGAPVLRRAGVGKVPEGEQENEVMNLFRNVLRQE
MDVIRTDLHNDIVSIHSELVLLASAQSRELKEVVKERDEKVMRLETEVRR
LKADNLRLRKKYGL*

mRNA from alignment at tig00000150_pilon:16746..18440+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9543.t1 ID=Ggra9543.t1|Name=Ggra9543.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1695bp|location=Sequence derived from alignment at tig00000150_pilon:16746..18440+ (Gracilaria gracilis GNS1m male)
ATGTCGCCCTCTCCTTACCTTCTTTCTCTGTCGGACGATGCGCTTGCCGT
TCATGACCAGTCGCTGCGAGTCGTTGAGCCGTCCGACTTGCATAGCGATG
CTGTGGCCGCGTTTTCTTCCAGCTCGAATGCGGTCGCCATTGCGTCGTCG
CCTTCGTGGAACGCTAGTCATGTCACTGTTTTTACCCACAGTGGCCGCCG
TCAACTTGAAACCGCTGCGTCGCGCGTCACCAAGCTTGCGCTATGCCCTA
ACACTACGTTCGTAGCGCTTGCGGACGCCGATAACACCGTGCAACTGCTC
AATGTTCACTCGCATCAAAGCGGCCAGTTCTCGCTTTCCTCGCGTGTCCT
CTCTCTATCTTTCGATTCGCAAAGCACATTGTTAAGCGTGTGTACATCGA
AAACAATCATCTTGATATCTCTTCCAACACTGCGACAAATCTCAGAGATA
ACGCCCACCTCCGCCACACGCTCATTCCCACGCGCCTCAACGCTTCGAAC
ATGTTTAACGAGCGCTGCCATCTCTCCATTACATTCTCTGCTAGCAAGCA
GTGACGACACCGGCTGCGTCACCGTGTACGACATAAGCGTCCCATCAACA
CCACACACGCACGCCCGATTCACCAGCGCGCTGCGAACGCCCGCAACCAC
AATGTGCTTCTCCTCTACCGGCATACTAGCCGTCGCCGGCTTCGACAAAC
ACATTCGTCTATACGATTCGCACCTCAAAACGCTCTTGTTTTCAATCGCC
ATTACTGCGCGTCCCACTGCGCTTGCCTTTCGCGAAAACGTCATTGCGGT
CGCTACCACCAACTCTACCATTTCGCTCATCGAAGCGGACGTCAACGAAA
ACTCCTTCGTGTACAACGCGCGTACCGAAACGTCCGAATCTCACACCACA
GCGCTGTTGCTGTGCCCACCAAGCGTGTCTCTTTCAACCGTGCCCACATC
TGCGGACCATTCACCAAAACAAGACGTCGATCCGCTGTCACAAACGTTTT
CAGACGTAGAGAGTTTTCTGTCGAGACTACCACCGCTCCCGCCTGACAAA
CAATCAAAACAGGCACAATCATCGAAGCGGTTGCATCAACGTCGATCGTT
ACCGCTGCTTTCAAAGCAGGAGAGCGATATGCATTGCGAGCAAGTGAGAG
CGGCGCAGCTGCCGCCTCACCTGAGCGCGAGCTTTCTGACGGATGAGCAA
GGATCCCCGCCCTCGTCAGCGGGGACTGCTTCTCCTGTGTCACGCTCCGT
CTCGCGGAAACATTCACAGAACCGGCAGGATGATACGGACAGTTTTGTAG
AGAGAGATTGCTCGCCAGAAGGCTCACCGTTGCTGAGATCGGTTTCTGGA
CAGGGTGCGTCTGTAGACAGAAGAAGAAGATCTGAAGAATTTTTCAATAT
CGGAGCACCTGTTTTAAGAAGAGCCGGTGTGGGAAAGGTTCCTGAAGGGG
AGCAGGAAAATGAGGTGATGAACTTGTTTAGAAATGTATTGCGACAAGAG
ATGGATGTGATTCGTACCGATCTGCACAATGACATTGTTAGTATTCATTC
CGAACTTGTTCTGCTTGCCTCGGCACAGTCGAGAGAACTAAAAGAGGTTG
TGAAAGAACGAGATGAGAAAGTGATGCGACTGGAGACAGAGGTGAGACGG
TTGAAGGCGGACAACTTGAGGCTGCGAAAGAAATACGGTCTGTGA

Coding sequence (CDS) from alignment at tig00000150_pilon:16746..18440+

>Ggra9543.t1 ID=Ggra9543.t1|Name=Ggra9543.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1695bp|location=Sequence derived from alignment at tig00000150_pilon:16746..18440+ (Gracilaria gracilis GNS1m male)
ATGTCGCCCTCTCCTTACCTTCTTTCTCTGTCGGACGATGCGCTTGCCGT
TCATGACCAGTCGCTGCGAGTCGTTGAGCCGTCCGACTTGCATAGCGATG
CTGTGGCCGCGTTTTCTTCCAGCTCGAATGCGGTCGCCATTGCGTCGTCG
CCTTCGTGGAACGCTAGTCATGTCACTGTTTTTACCCACAGTGGCCGCCG
TCAACTTGAAACCGCTGCGTCGCGCGTCACCAAGCTTGCGCTATGCCCTA
ACACTACGTTCGTAGCGCTTGCGGACGCCGATAACACCGTGCAACTGCTC
AATGTTCACTCGCATCAAAGCGGCCAGTTCTCGCTTTCCTCGCGTGTCCT
CTCTCTATCTTTCGATTCGCAAAGCACATTGTTAAGCGTGTGTACATCGA
AAACAATCATCTTGATATCTCTTCCAACACTGCGACAAATCTCAGAGATA
ACGCCCACCTCCGCCACACGCTCATTCCCACGCGCCTCAACGCTTCGAAC
ATGTTTAACGAGCGCTGCCATCTCTCCATTACATTCTCTGCTAGCAAGCA
GTGACGACACCGGCTGCGTCACCGTGTACGACATAAGCGTCCCATCAACA
CCACACACGCACGCCCGATTCACCAGCGCGCTGCGAACGCCCGCAACCAC
AATGTGCTTCTCCTCTACCGGCATACTAGCCGTCGCCGGCTTCGACAAAC
ACATTCGTCTATACGATTCGCACCTCAAAACGCTCTTGTTTTCAATCGCC
ATTACTGCGCGTCCCACTGCGCTTGCCTTTCGCGAAAACGTCATTGCGGT
CGCTACCACCAACTCTACCATTTCGCTCATCGAAGCGGACGTCAACGAAA
ACTCCTTCGTGTACAACGCGCGTACCGAAACGTCCGAATCTCACACCACA
GCGCTGTTGCTGTGCCCACCAAGCGTGTCTCTTTCAACCGTGCCCACATC
TGCGGACCATTCACCAAAACAAGACGTCGATCCGCTGTCACAAACGTTTT
CAGACGTAGAGAGTTTTCTGTCGAGACTACCACCGCTCCCGCCTGACAAA
CAATCAAAACAGGCACAATCATCGAAGCGGTTGCATCAACGTCGATCGTT
ACCGCTGCTTTCAAAGCAGGAGAGCGATATGCATTGCGAGCAAGTGAGAG
CGGCGCAGCTGCCGCCTCACCTGAGCGCGAGCTTTCTGACGGATGAGCAA
GGATCCCCGCCCTCGTCAGCGGGGACTGCTTCTCCTGTGTCACGCTCCGT
CTCGCGGAAACATTCACAGAACCGGCAGGATGATACGGACAGTTTTGTAG
AGAGAGATTGCTCGCCAGAAGGCTCACCGTTGCTGAGATCGGTTTCTGGA
CAGGGTGCGTCTGTAGACAGAAGAAGAAGATCTGAAGAATTTTTCAATAT
CGGAGCACCTGTTTTAAGAAGAGCCGGTGTGGGAAAGGTTCCTGAAGGGG
AGCAGGAAAATGAGGTGATGAACTTGTTTAGAAATGTATTGCGACAAGAG
ATGGATGTGATTCGTACCGATCTGCACAATGACATTGTTAGTATTCATTC
CGAACTTGTTCTGCTTGCCTCGGCACAGTCGAGAGAACTAAAAGAGGTTG
TGAAAGAACGAGATGAGAAAGTGATGCGACTGGAGACAGAGGTGAGACGG
TTGAAGGCGGACAACTTGAGGCTGCGAAAGAAATACGGTCTGTGA