Ggra9542.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9542.t1
Unique NameGgra9542.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length736
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000150_piloncontigtig00000150_pilon:13278..15560 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707295.1
Preferred nameTK
PFAMsTransket_pyr,Transketolase_C,Transketolase_N
Max annot lvl2759|Eukaryota
KEGG rclassRC00032,RC00226,RC00571,RC01560
KEGG koko:K00615,ko:K01662
KEGG ReactionR01067,R01641,R01830,R05636,R06590
KEGG Pathwayko00030,ko00710,ko00730,ko00900,ko01051,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map00730,map00900,map01051,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00004,M00007,M00096,M00165,M00167
GOsGO:0003674,GO:0003824,GO:0004802,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006950,GO:0006970,GO:0008150,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0009651,GO:0009941,GO:0010035,GO:0010038,GO:0016020,GO:0016740,GO:0016744,GO:0030145,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042221,GO:0042651,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046686,GO:0046872,GO:0046914,GO:0050896,GO:0050897,GO:0055035
Evalue1.73e-252
EggNOG OGsCOG0021@1|root,KOG0523@2759|Eukaryota
EC2.2.1.1,2.2.1.7
Descriptiontransketolase activity
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9542Ggra9542Gracilaria gracilis GNS1m malegenetig00000150_pilon 13278..15560 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9542.t1Ggra9542.t1Gracilaria gracilis GNS1m malepolypeptidetig00000150_pilon 13278..15560 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9542.t1.start1Ggra9542.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000150_pilon 13278..13280 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9542.t1.CDS1Ggra9542.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000150_pilon 13278..14811 +
Ggra9542.t1.CDS2Ggra9542.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000150_pilon 14887..15560 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9542.t1.exon1Ggra9542.t1.exon1Gracilaria gracilis GNS1m maleexontig00000150_pilon 13278..14811 +
Ggra9542.t1.exon2Ggra9542.t1.exon2Gracilaria gracilis GNS1m maleexontig00000150_pilon 14887..15560 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9542.t1.intron1Ggra9542.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000150_pilon 14812..14886 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9542.t1.stop1Ggra9542.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000150_pilon 15558..15560 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9542.t1 ID=Ggra9542.t1|Name=Ggra9542.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=736bp
MTHSTPDFTADIEEHSCFHQALLCNTSNVSLESVSPIEAAVRGSSSVSSD
EELIPYESVLSNYSTSEQLALANLCINSIRFLCVDAINHANSGHPGVCMG
MASAAFVLFDNHMKFNPSNPGWLNRDRFVLSAGHGSMLLYSLLHLYGYGA
VSLEDIKQFRKLNSTTPGHPECTETPGVEVCTGPLGQGISNAVGIAIAEA
HIASVYNRPGFPVVDNYTFCIVGDGCLMEGISSEACSLAGHLRLGKLIVL
YDDNHISIDGSTDLAFTEDVRQRFEAYGWQVLHVKQGTTDVRSINRAILS
AKQCTDKPTLIKVSTVIGYGAPNKQNTAKVHGAALGADETSAARKTLKYE
YEPFEIPPAVLEHLRRKVKAGASQESSWKTTLEEYETAYPELHKQFAEQV
GNSHQMPSVAIEALRKTALSLRQKSQATRKHSKAALDAIAPLVPNLIGGS
ADTSPSTLTDLDCSVDFTFGCRTGRNIRFGVREHAMGAISNGMGLAGYNL
FPFCSTFFVFTDYMRAAMRMASLSETGTLFIMTHDSIGLGEDGPSHQPIE
HLASFRAMPNHNVWRPADGVETAAAYANALVSRKCPSTIVLSRQSTNALP
ETDFDEAQKGGYVVYDSSNEKIDGVLIATGTEVAIAVSAAKKLEEDGFGV
RVVSLPCWEVFAQQGKRYRKMVINVARECCIAVEAGCQFGWERYADWFVC
VDEFGKSGKGSEVMKHMGICEENIIERFMQMIANC*
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spliced messenger RNA

>Ggra9542.t1 ID=Ggra9542.t1|Name=Ggra9542.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2208bp|location=Sequence derived from alignment at tig00000150_pilon:13278..15560+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACACATTCCACGCCGGACTTTACTGCAGACATTGAAGAACACAGCTG
TTTCCACCAGGCTTTGCTCTGCAACACTTCAAATGTATCACTGGAATCTG
TCTCCCCGATTGAAGCTGCGGTCAGGGGTTCATCTTCGGTCTCTTCTGAT
GAGGAGCTTATCCCGTACGAGTCTGTGCTGTCCAACTACTCAACATCGGA
ACAATTGGCGTTGGCGAACCTCTGCATCAATTCTATTCGTTTCCTTTGCG
TTGATGCCATTAATCATGCGAACAGTGGTCACCCAGGGGTATGCATGGGG
ATGGCATCAGCTGCGTTCGTGCTTTTTGACAATCATATGAAGTTCAACCC
CTCTAATCCTGGGTGGCTCAATAGAGACAGATTTGTTTTATCTGCAGGGC
ATGGTTCCATGCTATTGTATTCCTTACTACACCTCTACGGATACGGGGCT
GTTTCTCTTGAGGACATCAAACAGTTTCGGAAGCTCAACTCTACCACACC
GGGACACCCTGAATGTACTGAAACCCCTGGAGTTGAAGTTTGCACTGGCC
CCTTGGGACAGGGCATTTCCAATGCTGTGGGGATTGCTATTGCCGAAGCC
CATATCGCCTCTGTGTACAATCGACCCGGTTTCCCAGTGGTAGATAACTA
CACCTTCTGCATAGTTGGAGACGGATGTCTCATGGAGGGGATTTCTTCGG
AGGCATGTTCCTTGGCAGGTCATCTACGCCTGGGAAAGCTGATCGTTCTC
TACGACGACAATCATATTTCCATAGACGGATCAACAGATCTGGCCTTTAC
GGAAGACGTACGCCAGCGCTTTGAAGCGTATGGATGGCAAGTGCTTCACG
TCAAACAAGGAACTACAGATGTCAGGTCCATCAATAGAGCAATTCTGTCA
GCTAAGCAATGCACCGACAAGCCAACTCTCATCAAGGTCAGCACTGTCAT
TGGGTATGGTGCCCCCAACAAACAGAACACAGCAAAGGTTCACGGTGCAG
CCCTCGGGGCTGATGAAACAAGTGCTGCTCGAAAGACTCTGAAATATGAG
TACGAACCGTTTGAAATCCCCCCTGCTGTACTAGAACATCTCCGACGGAA
AGTGAAAGCTGGAGCTTCCCAAGAGTCTTCCTGGAAAACGACTCTTGAGG
AATACGAGACTGCATATCCCGAGCTTCATAAGCAATTCGCTGAACAGGTT
GGAAACTCTCATCAGATGCCATCAGTTGCTATTGAAGCCTTGCGAAAGAC
TGCACTTTCGCTTCGACAAAAGAGCCAAGCCACCAGAAAGCATTCGAAAG
CTGCGCTTGATGCGATCGCTCCGTTGGTACCGAATTTGATTGGTGGCAGC
GCTGACACGAGTCCGTCAACACTAACAGACTTGGACTGCTCTGTGGATTT
CACCTTTGGTTGCAGAACCGGAAGAAATATTCGTTTTGGCGTGCGAGAAC
ATGCCATGGGAGCGATAAGCAACGGTATGGGACTGGCTGGTTACAATTTG
TTTCCATTCTGTTCAACGTTTTTTGTCTTCACAGATTACATGCGAGCTGC
AATGAGAATGGCATCTCTCAGTGAAACAGGAACTCTCTTCATCATGACGC
ACGATTCAATCGGTCTCGGGGAAGATGGACCTTCTCATCAGCCAATTGAA
CATCTCGCATCTTTCCGAGCTATGCCGAACCACAACGTATGGCGTCCGGC
TGATGGCGTGGAAACAGCAGCTGCGTATGCCAATGCGCTCGTCTCACGTA
AATGTCCCAGTACAATCGTACTATCAAGGCAGTCGACAAACGCGTTGCCA
GAAACAGATTTCGACGAGGCCCAGAAAGGAGGCTATGTCGTTTACGACTC
CTCAAACGAAAAAATCGATGGGGTGTTGATCGCAACTGGAACGGAGGTAG
CCATAGCTGTGTCTGCAGCAAAGAAGTTGGAAGAAGATGGGTTTGGAGTT
CGTGTCGTTTCTCTTCCATGTTGGGAAGTGTTTGCTCAGCAAGGAAAACG
ATATCGTAAGATGGTTATTAACGTTGCTCGAGAATGCTGTATTGCCGTGG
AAGCGGGTTGCCAGTTTGGTTGGGAGAGGTATGCAGACTGGTTTGTGTGT
GTGGATGAGTTTGGAAAGAGCGGAAAAGGATCAGAGGTGATGAAGCATAT
GGGAATTTGTGAAGAGAACATTATTGAGCGATTCATGCAAATGATTGCGA
ATTGTTAG
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protein sequence of Ggra9542.t1

>Ggra9542.t1 ID=Ggra9542.t1|Name=Ggra9542.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=736bp
MTHSTPDFTADIEEHSCFHQALLCNTSNVSLESVSPIEAAVRGSSSVSSD
EELIPYESVLSNYSTSEQLALANLCINSIRFLCVDAINHANSGHPGVCMG
MASAAFVLFDNHMKFNPSNPGWLNRDRFVLSAGHGSMLLYSLLHLYGYGA
VSLEDIKQFRKLNSTTPGHPECTETPGVEVCTGPLGQGISNAVGIAIAEA
HIASVYNRPGFPVVDNYTFCIVGDGCLMEGISSEACSLAGHLRLGKLIVL
YDDNHISIDGSTDLAFTEDVRQRFEAYGWQVLHVKQGTTDVRSINRAILS
AKQCTDKPTLIKVSTVIGYGAPNKQNTAKVHGAALGADETSAARKTLKYE
YEPFEIPPAVLEHLRRKVKAGASQESSWKTTLEEYETAYPELHKQFAEQV
GNSHQMPSVAIEALRKTALSLRQKSQATRKHSKAALDAIAPLVPNLIGGS
ADTSPSTLTDLDCSVDFTFGCRTGRNIRFGVREHAMGAISNGMGLAGYNL
FPFCSTFFVFTDYMRAAMRMASLSETGTLFIMTHDSIGLGEDGPSHQPIE
HLASFRAMPNHNVWRPADGVETAAAYANALVSRKCPSTIVLSRQSTNALP
ETDFDEAQKGGYVVYDSSNEKIDGVLIATGTEVAIAVSAAKKLEEDGFGV
RVVSLPCWEVFAQQGKRYRKMVINVARECCIAVEAGCQFGWERYADWFVC
VDEFGKSGKGSEVMKHMGICEENIIERFMQMIANC*
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mRNA from alignment at tig00000150_pilon:13278..15560+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9542.t1 ID=Ggra9542.t1|Name=Ggra9542.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2283bp|location=Sequence derived from alignment at tig00000150_pilon:13278..15560+ (Gracilaria gracilis GNS1m male)
ATGACACATTCCACGCCGGACTTTACTGCAGACATTGAAGAACACAGCTG
TTTCCACCAGGCTTTGCTCTGCAACACTTCAAATGTATCACTGGAATCTG
TCTCCCCGATTGAAGCTGCGGTCAGGGGTTCATCTTCGGTCTCTTCTGAT
GAGGAGCTTATCCCGTACGAGTCTGTGCTGTCCAACTACTCAACATCGGA
ACAATTGGCGTTGGCGAACCTCTGCATCAATTCTATTCGTTTCCTTTGCG
TTGATGCCATTAATCATGCGAACAGTGGTCACCCAGGGGTATGCATGGGG
ATGGCATCAGCTGCGTTCGTGCTTTTTGACAATCATATGAAGTTCAACCC
CTCTAATCCTGGGTGGCTCAATAGAGACAGATTTGTTTTATCTGCAGGGC
ATGGTTCCATGCTATTGTATTCCTTACTACACCTCTACGGATACGGGGCT
GTTTCTCTTGAGGACATCAAACAGTTTCGGAAGCTCAACTCTACCACACC
GGGACACCCTGAATGTACTGAAACCCCTGGAGTTGAAGTTTGCACTGGCC
CCTTGGGACAGGGCATTTCCAATGCTGTGGGGATTGCTATTGCCGAAGCC
CATATCGCCTCTGTGTACAATCGACCCGGTTTCCCAGTGGTAGATAACTA
CACCTTCTGCATAGTTGGAGACGGATGTCTCATGGAGGGGATTTCTTCGG
AGGCATGTTCCTTGGCAGGTCATCTACGCCTGGGAAAGCTGATCGTTCTC
TACGACGACAATCATATTTCCATAGACGGATCAACAGATCTGGCCTTTAC
GGAAGACGTACGCCAGCGCTTTGAAGCGTATGGATGGCAAGTGCTTCACG
TCAAACAAGGAACTACAGATGTCAGGTCCATCAATAGAGCAATTCTGTCA
GCTAAGCAATGCACCGACAAGCCAACTCTCATCAAGGTCAGCACTGTCAT
TGGGTATGGTGCCCCCAACAAACAGAACACAGCAAAGGTTCACGGTGCAG
CCCTCGGGGCTGATGAAACAAGTGCTGCTCGAAAGACTCTGAAATATGAG
TACGAACCGTTTGAAATCCCCCCTGCTGTACTAGAACATCTCCGACGGAA
AGTGAAAGCTGGAGCTTCCCAAGAGTCTTCCTGGAAAACGACTCTTGAGG
AATACGAGACTGCATATCCCGAGCTTCATAAGCAATTCGCTGAACAGGTT
GGAAACTCTCATCAGATGCCATCAGTTGCTATTGAAGCCTTGCGAAAGAC
TGCACTTTCGCTTCGACAAAAGAGCCAAGCCACCAGAAAGCATTCGAAAG
CTGCGCTTGATGCGATCGCTCCGTTGGTACCGAATTTGATTGGTGGCAGC
GCTGACACGAGTCCGTCAACACTAACAGACTTGGACTGCTCTGTGGATTT
CACCTTTGGTTGCAGAACCGGAAGAAATATTCGTTTTGGCGTGCGAGAAC
ATGCCATGGGAGCGATAAGCAACGGTATGGGACTGGCTGGTTACAATTTG
TTTCCATTCTGTTCAACGTTTTTTGTCTTCACAGGTATGTCGGCATTTCA
ATTTCGTTTTCTCATCGCCATCGACCACATCAAAAAACAAATGCTAACAT
GATGCACAGATTACATGCGAGCTGCAATGAGAATGGCATCTCTCAGTGAA
ACAGGAACTCTCTTCATCATGACGCACGATTCAATCGGTCTCGGGGAAGA
TGGACCTTCTCATCAGCCAATTGAACATCTCGCATCTTTCCGAGCTATGC
CGAACCACAACGTATGGCGTCCGGCTGATGGCGTGGAAACAGCAGCTGCG
TATGCCAATGCGCTCGTCTCACGTAAATGTCCCAGTACAATCGTACTATC
AAGGCAGTCGACAAACGCGTTGCCAGAAACAGATTTCGACGAGGCCCAGA
AAGGAGGCTATGTCGTTTACGACTCCTCAAACGAAAAAATCGATGGGGTG
TTGATCGCAACTGGAACGGAGGTAGCCATAGCTGTGTCTGCAGCAAAGAA
GTTGGAAGAAGATGGGTTTGGAGTTCGTGTCGTTTCTCTTCCATGTTGGG
AAGTGTTTGCTCAGCAAGGAAAACGATATCGTAAGATGGTTATTAACGTT
GCTCGAGAATGCTGTATTGCCGTGGAAGCGGGTTGCCAGTTTGGTTGGGA
GAGGTATGCAGACTGGTTTGTGTGTGTGGATGAGTTTGGAAAGAGCGGAA
AAGGATCAGAGGTGATGAAGCATATGGGAATTTGTGAAGAGAACATTATT
GAGCGATTCATGCAAATGATTGCGAATTGTTAG
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Coding sequence (CDS) from alignment at tig00000150_pilon:13278..15560+

>Ggra9542.t1 ID=Ggra9542.t1|Name=Ggra9542.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2208bp|location=Sequence derived from alignment at tig00000150_pilon:13278..15560+ (Gracilaria gracilis GNS1m male)
ATGACACATTCCACGCCGGACTTTACTGCAGACATTGAAGAACACAGCTG
TTTCCACCAGGCTTTGCTCTGCAACACTTCAAATGTATCACTGGAATCTG
TCTCCCCGATTGAAGCTGCGGTCAGGGGTTCATCTTCGGTCTCTTCTGAT
GAGGAGCTTATCCCGTACGAGTCTGTGCTGTCCAACTACTCAACATCGGA
ACAATTGGCGTTGGCGAACCTCTGCATCAATTCTATTCGTTTCCTTTGCG
TTGATGCCATTAATCATGCGAACAGTGGTCACCCAGGGGTATGCATGGGG
ATGGCATCAGCTGCGTTCGTGCTTTTTGACAATCATATGAAGTTCAACCC
CTCTAATCCTGGGTGGCTCAATAGAGACAGATTTGTTTTATCTGCAGGGC
ATGGTTCCATGCTATTGTATTCCTTACTACACCTCTACGGATACGGGGCT
GTTTCTCTTGAGGACATCAAACAGTTTCGGAAGCTCAACTCTACCACACC
GGGACACCCTGAATGTACTGAAACCCCTGGAGTTGAAGTTTGCACTGGCC
CCTTGGGACAGGGCATTTCCAATGCTGTGGGGATTGCTATTGCCGAAGCC
CATATCGCCTCTGTGTACAATCGACCCGGTTTCCCAGTGGTAGATAACTA
CACCTTCTGCATAGTTGGAGACGGATGTCTCATGGAGGGGATTTCTTCGG
AGGCATGTTCCTTGGCAGGTCATCTACGCCTGGGAAAGCTGATCGTTCTC
TACGACGACAATCATATTTCCATAGACGGATCAACAGATCTGGCCTTTAC
GGAAGACGTACGCCAGCGCTTTGAAGCGTATGGATGGCAAGTGCTTCACG
TCAAACAAGGAACTACAGATGTCAGGTCCATCAATAGAGCAATTCTGTCA
GCTAAGCAATGCACCGACAAGCCAACTCTCATCAAGGTCAGCACTGTCAT
TGGGTATGGTGCCCCCAACAAACAGAACACAGCAAAGGTTCACGGTGCAG
CCCTCGGGGCTGATGAAACAAGTGCTGCTCGAAAGACTCTGAAATATGAG
TACGAACCGTTTGAAATCCCCCCTGCTGTACTAGAACATCTCCGACGGAA
AGTGAAAGCTGGAGCTTCCCAAGAGTCTTCCTGGAAAACGACTCTTGAGG
AATACGAGACTGCATATCCCGAGCTTCATAAGCAATTCGCTGAACAGGTT
GGAAACTCTCATCAGATGCCATCAGTTGCTATTGAAGCCTTGCGAAAGAC
TGCACTTTCGCTTCGACAAAAGAGCCAAGCCACCAGAAAGCATTCGAAAG
CTGCGCTTGATGCGATCGCTCCGTTGGTACCGAATTTGATTGGTGGCAGC
GCTGACACGAGTCCGTCAACACTAACAGACTTGGACTGCTCTGTGGATTT
CACCTTTGGTTGCAGAACCGGAAGAAATATTCGTTTTGGCGTGCGAGAAC
ATGCCATGGGAGCGATAAGCAACGGTATGGGACTGGCTGGTTACAATTTG
TTTCCATTCTGTTCAACGTTTTTTGTCTTCACAGATTACATGCGAGCTGC
AATGAGAATGGCATCTCTCAGTGAAACAGGAACTCTCTTCATCATGACGC
ACGATTCAATCGGTCTCGGGGAAGATGGACCTTCTCATCAGCCAATTGAA
CATCTCGCATCTTTCCGAGCTATGCCGAACCACAACGTATGGCGTCCGGC
TGATGGCGTGGAAACAGCAGCTGCGTATGCCAATGCGCTCGTCTCACGTA
AATGTCCCAGTACAATCGTACTATCAAGGCAGTCGACAAACGCGTTGCCA
GAAACAGATTTCGACGAGGCCCAGAAAGGAGGCTATGTCGTTTACGACTC
CTCAAACGAAAAAATCGATGGGGTGTTGATCGCAACTGGAACGGAGGTAG
CCATAGCTGTGTCTGCAGCAAAGAAGTTGGAAGAAGATGGGTTTGGAGTT
CGTGTCGTTTCTCTTCCATGTTGGGAAGTGTTTGCTCAGCAAGGAAAACG
ATATCGTAAGATGGTTATTAACGTTGCTCGAGAATGCTGTATTGCCGTGG
AAGCGGGTTGCCAGTTTGGTTGGGAGAGGTATGCAGACTGGTTTGTGTGT
GTGGATGAGTTTGGAAAGAGCGGAAAAGGATCAGAGGTGATGAAGCATAT
GGGAATTTGTGAAGAGAACATTATTGAGCGATTCATGCAAATGATTGCGA
ATTGTTAG
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