Ggra9537.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9537.t1
Unique Name	Ggra9537.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	537

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000873_pilon	contig	tig00000873_pilon:807132..808742 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9537	Ggra9537	Gracilaria gracilis GNS1m male	gene	tig00000873_pilon 807132..808742 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9537.t1.stop1	Ggra9537.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000873_pilon 807132..807134 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9537.t1.CDS1	Ggra9537.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000873_pilon 807132..808742 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9537.t1.exon1	Ggra9537.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000873_pilon 807132..808742 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9537.t1.start1	Ggra9537.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000873_pilon 808740..808742 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9537.t1	Ggra9537.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000873_pilon 807132..808742 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000873_pilon:807132..808742-
coding sequence from alignment at tig00000873_pilon:807132..808742-

mRNA sequence

>Ggra9537.t1 ID=Ggra9537.t1|Name=Ggra9537.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=537bp
MDYDSFKTLADIEPLEDDEMGISTSHMRGVKRGMTDRIEHGNLRPRKISK
TKSNMTPVEAVNETTDAKSASRRAHLAKANVDTEIQNAHGNAPRRGRFLR
TQRLWQQNLELINHTAPEFFSTSDSRLSRSSRTWREGKIYEGLNATRQNC
LALRKLHEVFWKPKERMSFADKEGFRRLSHTVSQFLRLCVARRLCSKLDP
YKTHVLFENAVKMNVVQRFIDFHIECYSPRTVERKTRHMKKLCMIAAGFV
RSIRGRERIAQVSKFLDIIINSRRSQIGPGHAEQHLKPILPSIFVRQCFQ
LALFDLNDMISKYHSKESGLEIIRNGEFLSRWSSAFVTFIAICSGGQNPE
TLASIEVPSDEDFKGMLDRAVQAGFVQLAALRHKRTQALGLPVVILPLCS
ITILRFQIKVVHPMITSLFSSGGSIGALRPLIVHSVTGKRMESWKIAYEF
KKYVSERCPIMRSINLRSLKESALHMFLAGFREKEILRGHSEGQFLDVAA
RYANTTSKQVKICVGARGSMAHEATAKELTKVFEKS*

spliced messenger RNA

>Ggra9537.t1 ID=Ggra9537.t1|Name=Ggra9537.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1611bp|location=Sequence derived from alignment at tig00000873_pilon:807132..808742- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACTACGACAGCTTTAAAACTCTTGCCGATATTGAGCCTTTGGAAGA
CGATGAAATGGGTATTTCCACAAGTCATATGCGAGGCGTTAAGAGAGGTA
TGACTGATCGTATCGAACATGGAAACTTGAGGCCTCGCAAAATCTCAAAA
ACGAAGTCAAACATGACTCCAGTTGAAGCTGTGAACGAGACGACTGACGC
AAAATCCGCCTCACGAAGGGCGCATCTGGCCAAAGCTAATGTTGATACCG
AAATTCAGAATGCGCACGGTAATGCTCCACGGAGAGGCAGGTTTCTTCGG
ACCCAGCGGCTTTGGCAACAGAATCTCGAGTTGATTAATCACACTGCACC
AGAGTTCTTTTCCACAAGTGATTCAAGGCTCTCACGGTCGTCTCGAACTT
GGAGAGAGGGAAAGATATACGAGGGTCTAAACGCGACGCGCCAAAACTGC
TTGGCTCTGAGAAAGTTACATGAGGTGTTTTGGAAACCCAAGGAACGAAT
GAGCTTCGCGGACAAAGAGGGATTTCGAAGATTATCGCACACTGTGTCCC
AGTTTCTGAGACTTTGTGTAGCTCGCAGACTGTGCTCCAAGCTTGATCCG
TACAAAACACACGTCTTGTTTGAGAATGCTGTTAAAATGAACGTCGTCCA
ACGCTTCATTGATTTTCACATAGAGTGCTACTCCCCGAGAACCGTAGAAC
GAAAGACACGTCACATGAAAAAGTTGTGTATGATTGCCGCTGGCTTTGTA
CGGTCTATCCGTGGACGAGAACGTATTGCACAGGTTTCGAAATTCTTGGA
CATTATTATCAACTCGAGAAGAAGCCAAATAGGGCCTGGACATGCGGAGC
AGCATTTGAAACCAATTCTACCTTCGATTTTTGTCAGGCAGTGTTTCCAA
TTAGCCCTGTTCGACCTCAATGATATGATATCTAAATACCACTCAAAGGA
GTCTGGACTTGAGATAATCCGTAATGGTGAATTCTTGAGCAGATGGTCAT
CAGCGTTTGTCACTTTCATTGCAATATGTTCTGGTGGACAGAATCCAGAA
ACGCTTGCGAGCATAGAGGTCCCAAGCGATGAGGATTTTAAGGGGATGCT
TGATCGGGCTGTCCAAGCTGGGTTTGTGCAACTCGCAGCGCTTCGGCACA
AAAGAACGCAGGCCCTTGGCCTCCCCGTTGTGATTCTACCGCTATGCTCA
ATCACAATCCTTCGATTTCAAATCAAAGTCGTGCACCCAATGATTACGTC
ACTGTTTAGCAGTGGGGGGTCTATAGGGGCTCTGAGACCATTGATAGTCC
ACTCGGTGACCGGGAAGCGTATGGAATCATGGAAAATTGCCTACGAGTTT
AAGAAATATGTCAGCGAGAGGTGCCCAATAATGCGCTCCATCAACCTGAG
GTCGTTGAAAGAGAGTGCACTACACATGTTTCTAGCAGGCTTTCGTGAGA
AGGAAATACTTCGAGGCCATTCGGAAGGTCAATTCCTCGATGTGGCTGCT
CGATACGCGAATACAACTTCGAAGCAGGTAAAGATATGCGTAGGCGCCCG
AGGTTCTATGGCACATGAAGCAACAGCTAAGGAGCTCACCAAGGTCTTTG
AGAAGTCGTAA

protein sequence of Ggra9537.t1

>Ggra9537.t1 ID=Ggra9537.t1|Name=Ggra9537.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=537bp
MDYDSFKTLADIEPLEDDEMGISTSHMRGVKRGMTDRIEHGNLRPRKISK
TKSNMTPVEAVNETTDAKSASRRAHLAKANVDTEIQNAHGNAPRRGRFLR
TQRLWQQNLELINHTAPEFFSTSDSRLSRSSRTWREGKIYEGLNATRQNC
LALRKLHEVFWKPKERMSFADKEGFRRLSHTVSQFLRLCVARRLCSKLDP
YKTHVLFENAVKMNVVQRFIDFHIECYSPRTVERKTRHMKKLCMIAAGFV
RSIRGRERIAQVSKFLDIIINSRRSQIGPGHAEQHLKPILPSIFVRQCFQ
LALFDLNDMISKYHSKESGLEIIRNGEFLSRWSSAFVTFIAICSGGQNPE
TLASIEVPSDEDFKGMLDRAVQAGFVQLAALRHKRTQALGLPVVILPLCS
ITILRFQIKVVHPMITSLFSSGGSIGALRPLIVHSVTGKRMESWKIAYEF
KKYVSERCPIMRSINLRSLKESALHMFLAGFREKEILRGHSEGQFLDVAA
RYANTTSKQVKICVGARGSMAHEATAKELTKVFEKS*

mRNA from alignment at tig00000873_pilon:807132..808742-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9537.t1 ID=Ggra9537.t1|Name=Ggra9537.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1611bp|location=Sequence derived from alignment at tig00000873_pilon:807132..808742- (Gracilaria gracilis GNS1m male)
ATGGACTACGACAGCTTTAAAACTCTTGCCGATATTGAGCCTTTGGAAGA
CGATGAAATGGGTATTTCCACAAGTCATATGCGAGGCGTTAAGAGAGGTA
TGACTGATCGTATCGAACATGGAAACTTGAGGCCTCGCAAAATCTCAAAA
ACGAAGTCAAACATGACTCCAGTTGAAGCTGTGAACGAGACGACTGACGC
AAAATCCGCCTCACGAAGGGCGCATCTGGCCAAAGCTAATGTTGATACCG
AAATTCAGAATGCGCACGGTAATGCTCCACGGAGAGGCAGGTTTCTTCGG
ACCCAGCGGCTTTGGCAACAGAATCTCGAGTTGATTAATCACACTGCACC
AGAGTTCTTTTCCACAAGTGATTCAAGGCTCTCACGGTCGTCTCGAACTT
GGAGAGAGGGAAAGATATACGAGGGTCTAAACGCGACGCGCCAAAACTGC
TTGGCTCTGAGAAAGTTACATGAGGTGTTTTGGAAACCCAAGGAACGAAT
GAGCTTCGCGGACAAAGAGGGATTTCGAAGATTATCGCACACTGTGTCCC
AGTTTCTGAGACTTTGTGTAGCTCGCAGACTGTGCTCCAAGCTTGATCCG
TACAAAACACACGTCTTGTTTGAGAATGCTGTTAAAATGAACGTCGTCCA
ACGCTTCATTGATTTTCACATAGAGTGCTACTCCCCGAGAACCGTAGAAC
GAAAGACACGTCACATGAAAAAGTTGTGTATGATTGCCGCTGGCTTTGTA
CGGTCTATCCGTGGACGAGAACGTATTGCACAGGTTTCGAAATTCTTGGA
CATTATTATCAACTCGAGAAGAAGCCAAATAGGGCCTGGACATGCGGAGC
AGCATTTGAAACCAATTCTACCTTCGATTTTTGTCAGGCAGTGTTTCCAA
TTAGCCCTGTTCGACCTCAATGATATGATATCTAAATACCACTCAAAGGA
GTCTGGACTTGAGATAATCCGTAATGGTGAATTCTTGAGCAGATGGTCAT
CAGCGTTTGTCACTTTCATTGCAATATGTTCTGGTGGACAGAATCCAGAA
ACGCTTGCGAGCATAGAGGTCCCAAGCGATGAGGATTTTAAGGGGATGCT
TGATCGGGCTGTCCAAGCTGGGTTTGTGCAACTCGCAGCGCTTCGGCACA
AAAGAACGCAGGCCCTTGGCCTCCCCGTTGTGATTCTACCGCTATGCTCA
ATCACAATCCTTCGATTTCAAATCAAAGTCGTGCACCCAATGATTACGTC
ACTGTTTAGCAGTGGGGGGTCTATAGGGGCTCTGAGACCATTGATAGTCC
ACTCGGTGACCGGGAAGCGTATGGAATCATGGAAAATTGCCTACGAGTTT
AAGAAATATGTCAGCGAGAGGTGCCCAATAATGCGCTCCATCAACCTGAG
GTCGTTGAAAGAGAGTGCACTACACATGTTTCTAGCAGGCTTTCGTGAGA
AGGAAATACTTCGAGGCCATTCGGAAGGTCAATTCCTCGATGTGGCTGCT
CGATACGCGAATACAACTTCGAAGCAGGTAAAGATATGCGTAGGCGCCCG
AGGTTCTATGGCACATGAAGCAACAGCTAAGGAGCTCACCAAGGTCTTTG
AGAAGTCGTAA

Coding sequence (CDS) from alignment at tig00000873_pilon:807132..808742-

>Ggra9537.t1 ID=Ggra9537.t1|Name=Ggra9537.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1611bp|location=Sequence derived from alignment at tig00000873_pilon:807132..808742- (Gracilaria gracilis GNS1m male)
ATGGACTACGACAGCTTTAAAACTCTTGCCGATATTGAGCCTTTGGAAGA
CGATGAAATGGGTATTTCCACAAGTCATATGCGAGGCGTTAAGAGAGGTA
TGACTGATCGTATCGAACATGGAAACTTGAGGCCTCGCAAAATCTCAAAA
ACGAAGTCAAACATGACTCCAGTTGAAGCTGTGAACGAGACGACTGACGC
AAAATCCGCCTCACGAAGGGCGCATCTGGCCAAAGCTAATGTTGATACCG
AAATTCAGAATGCGCACGGTAATGCTCCACGGAGAGGCAGGTTTCTTCGG
ACCCAGCGGCTTTGGCAACAGAATCTCGAGTTGATTAATCACACTGCACC
AGAGTTCTTTTCCACAAGTGATTCAAGGCTCTCACGGTCGTCTCGAACTT
GGAGAGAGGGAAAGATATACGAGGGTCTAAACGCGACGCGCCAAAACTGC
TTGGCTCTGAGAAAGTTACATGAGGTGTTTTGGAAACCCAAGGAACGAAT
GAGCTTCGCGGACAAAGAGGGATTTCGAAGATTATCGCACACTGTGTCCC
AGTTTCTGAGACTTTGTGTAGCTCGCAGACTGTGCTCCAAGCTTGATCCG
TACAAAACACACGTCTTGTTTGAGAATGCTGTTAAAATGAACGTCGTCCA
ACGCTTCATTGATTTTCACATAGAGTGCTACTCCCCGAGAACCGTAGAAC
GAAAGACACGTCACATGAAAAAGTTGTGTATGATTGCCGCTGGCTTTGTA
CGGTCTATCCGTGGACGAGAACGTATTGCACAGGTTTCGAAATTCTTGGA
CATTATTATCAACTCGAGAAGAAGCCAAATAGGGCCTGGACATGCGGAGC
AGCATTTGAAACCAATTCTACCTTCGATTTTTGTCAGGCAGTGTTTCCAA
TTAGCCCTGTTCGACCTCAATGATATGATATCTAAATACCACTCAAAGGA
GTCTGGACTTGAGATAATCCGTAATGGTGAATTCTTGAGCAGATGGTCAT
CAGCGTTTGTCACTTTCATTGCAATATGTTCTGGTGGACAGAATCCAGAA
ACGCTTGCGAGCATAGAGGTCCCAAGCGATGAGGATTTTAAGGGGATGCT
TGATCGGGCTGTCCAAGCTGGGTTTGTGCAACTCGCAGCGCTTCGGCACA
AAAGAACGCAGGCCCTTGGCCTCCCCGTTGTGATTCTACCGCTATGCTCA
ATCACAATCCTTCGATTTCAAATCAAAGTCGTGCACCCAATGATTACGTC
ACTGTTTAGCAGTGGGGGGTCTATAGGGGCTCTGAGACCATTGATAGTCC
ACTCGGTGACCGGGAAGCGTATGGAATCATGGAAAATTGCCTACGAGTTT
AAGAAATATGTCAGCGAGAGGTGCCCAATAATGCGCTCCATCAACCTGAG
GTCGTTGAAAGAGAGTGCACTACACATGTTTCTAGCAGGCTTTCGTGAGA
AGGAAATACTTCGAGGCCATTCGGAAGGTCAATTCCTCGATGTGGCTGCT
CGATACGCGAATACAACTTCGAAGCAGGTAAAGATATGCGTAGGCGCCCG
AGGTTCTATGGCACATGAAGCAACAGCTAAGGAGCTCACCAAGGTCTTTG
AGAAGTCGTAA