Ggra9535.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9535.t1
Unique NameGgra9535.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length134
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000873_piloncontigtig00000873_pilon:764157..764558 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9535Ggra9535Gracilaria gracilis GNS1m malegenetig00000873_pilon 764157..764558 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9535.t1.start1Ggra9535.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000873_pilon 764157..764159 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9535.t1.CDS1Ggra9535.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000873_pilon 764157..764558 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9535.t1.exon1Ggra9535.t1.exon1Gracilaria gracilis GNS1m maleexontig00000873_pilon 764157..764558 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9535.t1.stop1Ggra9535.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000873_pilon 764556..764558 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9535.t1Ggra9535.t1Gracilaria gracilis GNS1m malepolypeptidetig00000873_pilon 764157..764558 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9535.t1 ID=Ggra9535.t1|Name=Ggra9535.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=134bp
MDIDTLGNSIESKELRAEVGPSSSHDAEENPIHVKLPVRFEKFPENLYTP
IQKKRRSSGYKVEGSSQEIGNGDVQNPLREFINLVSADDDDCEKREDHAS
RLAGYEIEETGIEPPVKGMTTILRDNVDKVWNG*
back to top

spliced messenger RNA

>Ggra9535.t1 ID=Ggra9535.t1|Name=Ggra9535.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=402bp|location=Sequence derived from alignment at tig00000873_pilon:764157..764558+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
atggaTATTGATACTCTTGGAAACTCGATAGAGTCCAAGGAGCTGAGAGC
TGAGGTAGGACCTTCTTCCTCACATGATGCTGAAGAGAATCCTATACACG
TGAAGCTCCCTGTGAGGTTCGAGAAGTTCCCCGAGAACCTATATACGCCC
ATACAGAAAAAGCGTCGCTCTTCCGGTTACAAGGTTGAGGGAAGTTCTCA
AGAGATCGGCAATGGAGATGTTCAGAACCCTCTTCGGGAGTTCATAAACC
TCGTCAGCGCCGATGACGATGACTGTGAGAAACGAGAGGACCATGCCTCA
CGACTGGCGGGTTATGAAATCGAGGAGACTGGTATTGAACCGCCGGTGAA
GGGTATGACCACTATTCTCCGCGATAATGTGGACAAAGTGTGGAATGGGT
AA
back to top

protein sequence of Ggra9535.t1

>Ggra9535.t1 ID=Ggra9535.t1|Name=Ggra9535.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=134bp
MDIDTLGNSIESKELRAEVGPSSSHDAEENPIHVKLPVRFEKFPENLYTP
IQKKRRSSGYKVEGSSQEIGNGDVQNPLREFINLVSADDDDCEKREDHAS
RLAGYEIEETGIEPPVKGMTTILRDNVDKVWNG*
back to top

mRNA from alignment at tig00000873_pilon:764157..764558+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9535.t1 ID=Ggra9535.t1|Name=Ggra9535.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=402bp|location=Sequence derived from alignment at tig00000873_pilon:764157..764558+ (Gracilaria gracilis GNS1m male)
atggaTATTGATACTCTTGGAAACTCGATAGAGTCCAAGGAGCTGAGAGC
TGAGGTAGGACCTTCTTCCTCACATGATGCTGAAGAGAATCCTATACACG
TGAAGCTCCCTGTGAGGTTCGAGAAGTTCCCCGAGAACCTATATACGCCC
ATACAGAAAAAGCGTCGCTCTTCCGGTTACAAGGTTGAGGGAAGTTCTCA
AGAGATCGGCAATGGAGATGTTCAGAACCCTCTTCGGGAGTTCATAAACC
TCGTCAGCGCCGATGACGATGACTGTGAGAAACGAGAGGACCATGCCTCA
CGACTGGCGGGTTATGAAATCGAGGAGACTGGTATTGAACCGCCGGTGAA
GGGTATGACCACTATTCTCCGCGATAATGTGGACAAAGTGTGGAATGGGT
AA
back to top

Coding sequence (CDS) from alignment at tig00000873_pilon:764157..764558+

>Ggra9535.t1 ID=Ggra9535.t1|Name=Ggra9535.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=402bp|location=Sequence derived from alignment at tig00000873_pilon:764157..764558+ (Gracilaria gracilis GNS1m male)
atggaTATTGATACTCTTGGAAACTCGATAGAGTCCAAGGAGCTGAGAGC
TGAGGTAGGACCTTCTTCCTCACATGATGCTGAAGAGAATCCTATACACG
TGAAGCTCCCTGTGAGGTTCGAGAAGTTCCCCGAGAACCTATATACGCCC
ATACAGAAAAAGCGTCGCTCTTCCGGTTACAAGGTTGAGGGAAGTTCTCA
AGAGATCGGCAATGGAGATGTTCAGAACCCTCTTCGGGAGTTCATAAACC
TCGTCAGCGCCGATGACGATGACTGTGAGAAACGAGAGGACCATGCCTCA
CGACTGGCGGGTTATGAAATCGAGGAGACTGGTATTGAACCGCCGGTGAA
GGGTATGACCACTATTCTCCGCGATAATGTGGACAAAGTGTGGAATGGGT
AA
back to top