Ggra9533.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9533.t1
Unique NameGgra9533.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length143
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000873_piloncontigtig00000873_pilon:707895..708323 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9533Ggra9533Gracilaria gracilis GNS1m malegenetig00000873_pilon 707895..708323 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9533.t1.start1Ggra9533.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000873_pilon 707895..707897 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9533.t1.CDS1Ggra9533.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000873_pilon 707895..708323 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9533.t1.exon1Ggra9533.t1.exon1Gracilaria gracilis GNS1m maleexontig00000873_pilon 707895..708323 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9533.t1.stop1Ggra9533.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000873_pilon 708321..708323 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9533.t1Ggra9533.t1Gracilaria gracilis GNS1m malepolypeptidetig00000873_pilon 707895..708323 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9533.t1 ID=Ggra9533.t1|Name=Ggra9533.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=143bp
MTDTVRCITDDDTANDASRWCGPVLDLETEEVIDNRVATDGVMSSFANLI
ASTGAGNGAECQDTPGTSPGCSRKDTPVPLLSPLRAMDEVRTWLHRLAYG
TRYAYLTTRDALADASPTYVGCATASNTRCAALALRQIGNSP*
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spliced messenger RNA

>Ggra9533.t1 ID=Ggra9533.t1|Name=Ggra9533.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=429bp|location=Sequence derived from alignment at tig00000873_pilon:707895..708323+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGACACCGTACGCTGCATAACTGACGACGACACCGCAAACGACGC
ATCTCGCTGGTGCGGCCCCGTGCTGGACCTCGAGACCGAGGAGGTCATAG
ATAACAGGGTCGCAACCGACGGGGTCATGTCCTCCTTCGCTAATTTAATA
GCCAGCACCGGTGCCGGCAATGGGGCCGAGTGCCAGGACACCCCGGGCAC
CAGCCCGGGATGCAGCCGCAAAGATACGCCCGTGCCCCTTCTGTCGCCAC
TACGGGCGATGGATGAGGTGCGCACGTGGCTCCATCGCCTGGCATATGGC
ACGCGCTACGCGTACCTGACCACACGCGATGCGCTCGCCGACGCGTCTCC
TACGTACGTGGGGTGCGCAACAGCATCGAATACGCGGTGCGCTGCATTGG
CCTTGCGACAGATTGGGAACAGTCCATGA
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protein sequence of Ggra9533.t1

>Ggra9533.t1 ID=Ggra9533.t1|Name=Ggra9533.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=143bp
MTDTVRCITDDDTANDASRWCGPVLDLETEEVIDNRVATDGVMSSFANLI
ASTGAGNGAECQDTPGTSPGCSRKDTPVPLLSPLRAMDEVRTWLHRLAYG
TRYAYLTTRDALADASPTYVGCATASNTRCAALALRQIGNSP*
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mRNA from alignment at tig00000873_pilon:707895..708323+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9533.t1 ID=Ggra9533.t1|Name=Ggra9533.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=429bp|location=Sequence derived from alignment at tig00000873_pilon:707895..708323+ (Gracilaria gracilis GNS1m male)
ATGACCGACACCGTACGCTGCATAACTGACGACGACACCGCAAACGACGC
ATCTCGCTGGTGCGGCCCCGTGCTGGACCTCGAGACCGAGGAGGTCATAG
ATAACAGGGTCGCAACCGACGGGGTCATGTCCTCCTTCGCTAATTTAATA
GCCAGCACCGGTGCCGGCAATGGGGCCGAGTGCCAGGACACCCCGGGCAC
CAGCCCGGGATGCAGCCGCAAAGATACGCCCGTGCCCCTTCTGTCGCCAC
TACGGGCGATGGATGAGGTGCGCACGTGGCTCCATCGCCTGGCATATGGC
ACGCGCTACGCGTACCTGACCACACGCGATGCGCTCGCCGACGCGTCTCC
TACGTACGTGGGGTGCGCAACAGCATCGAATACGCGGTGCGCTGCATTGG
CCTTGCGACAGATTGGGAACAGTCCATGA
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Coding sequence (CDS) from alignment at tig00000873_pilon:707895..708323+

>Ggra9533.t1 ID=Ggra9533.t1|Name=Ggra9533.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=429bp|location=Sequence derived from alignment at tig00000873_pilon:707895..708323+ (Gracilaria gracilis GNS1m male)
ATGACCGACACCGTACGCTGCATAACTGACGACGACACCGCAAACGACGC
ATCTCGCTGGTGCGGCCCCGTGCTGGACCTCGAGACCGAGGAGGTCATAG
ATAACAGGGTCGCAACCGACGGGGTCATGTCCTCCTTCGCTAATTTAATA
GCCAGCACCGGTGCCGGCAATGGGGCCGAGTGCCAGGACACCCCGGGCAC
CAGCCCGGGATGCAGCCGCAAAGATACGCCCGTGCCCCTTCTGTCGCCAC
TACGGGCGATGGATGAGGTGCGCACGTGGCTCCATCGCCTGGCATATGGC
ACGCGCTACGCGTACCTGACCACACGCGATGCGCTCGCCGACGCGTCTCC
TACGTACGTGGGGTGCGCAACAGCATCGAATACGCGGTGCGCTGCATTGG
CCTTGCGACAGATTGGGAACAGTCCATGA
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