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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 10228.TriadP52362 |
| Preferred name | PTCHD3 |
| PFAMs | Patched |
| Max annot lvl | 33208|Metazoa |
| Evalue | 1.39e-07 |
| EggNOG OGs | KOG1933@1|root,KOG1933@2759|Eukaryota,39MRF@33154|Opisthokonta,3CPBC@33208|Metazoa |
| Description | Sterol-sensing domain of SREBP cleavage-activation |
| COG category | I |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra9531.t1.stop1 | Ggra9531.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000873_pilon 699098..699100 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra9531.t1.start1 | Ggra9531.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000873_pilon 705051..705053 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra9531.t1 ID=Ggra9531.t1|Name=Ggra9531.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=430bp MQPSSTPSQEDYLRKMQVQQKQQAQMNAFYYNVIVAFSKPKDDFKKHDHA FLYEALLYKFDKNDFDEYISSYIDDMFLPVTLAFDDVNLKAGRDEKPLRL RTALALSGPGFGITVTSFSHVVVFLLSAISRLSPLRFFALWAAVGILFAW VSAINLFAACLALDAGRRGAKRRDCCPCFPPVAEVREFNCVVIGWLGACF YGMTQLYLKFWFSLFSPSGSAPREFQDQVDGIEDGSFIEPSIFTTHVKQF LSGGGGLYSEDIILTKNTINICRFDVQYVYRERKNDEITALDSARSRLTL EQYGALPDEIGLSLGRTSLALPLVCFVLEGHPVVAIVCAVVVGLIVIDVF GLTFFSGVNLKAVSVITLMLSTAQWAPGVLRMVLPVSGHLVLAGASSYIF QVILCGFLFLILMGSIHGLVLGSIVLSLV* back to topspliced messenger RNA >Ggra9531.t1 ID=Ggra9531.t1|Name=Ggra9531.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1290bp|location=Sequence derived from alignment at tig00000873_pilon:699098..705053- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGCAGCCATCATCTACTCCGTCTCAAGAAGACTATCTGCGCAAGATGCA AGTGCAGCAAAAGCAGCAAGCACAAATGAATGCCTTCTATTACAATGTTA TTGTTGCCTTCTCTAAGCCAAAGGACGATTTCAAGAAACATGATCACGCT TTTTTGTATGAGGCACTTTTATACAAGTTCGATAAGAATGACTTCGATGA ATACATTTCGTCGTATATCGATGACATGTTTTTGCCAGTGACGCTTGCAT TCGACGACGTCAACTTGAAAGCCGGCAGGGATGAAAAGCCACTTCGACTC CGCACGGCTTTGGCGCTGAGTGGGCCCGGCTTTGGAATTACTGTCACATC GTTCTCTCACGTGGTGGTGTTTTTGTTGAGTGCTATCAGTCGTCTGTCTC CGCTTCGATTCTTTGCGTTGTGGGCTGCGGTCGGTATTTTATTTGCGTGG GTGTCTGCCATTAACTTATTCGCAGCGTGTCTTGCTCTAGATGCCGGAAG ACGGGGAGCGAAGCGTCGTGATTGCTGCCCTTGCTTCCCACCCGTGGCAG AAGTTAGAGAATTCAATTGTGTTGTTATTGGCTGGCTCGGTGCGTGCTTT TACGGTATGACGCAGCTGTACCTCAAGTTCTGGTTCTCTCTCTTTTCCCC GTCTGGCTCTGCTCCACGCGAGTTCCAGGACCAAGTGGACGGCATTGAAG ATGGCTCGTTCATCGAGCCCAGCATTTTCACCACTCATGTAAAGCAGTTC CTATCTGGCGGCGGCGGTCTCTACTCCGAGGACATTATCCTCACCAAAAA CACCATCAATATTTGTCGCTTCGATGTGCAGTATGTGTACCGCGAAAGAA AGAACGATGAAATCACCGCGTTGGACTCAGCGAGATCCAGGCTAACTCTG GAACAGTACGGTGCGTTGCCAGACGAGATCGGACTGTCGTTGGGTCGGAC TTCGCTGGCGCTGCCGCTGGTATGTTTCGTGTTGGAGGGTCATCCGGTGG TAGCAATTGTATGCGCGGTAGTGGTAGGCCTCATCGTCATCGACGTGTTC GGACTGACGTTTTTCTCTGGCGTGAATCTCAAAGCGGTGTCAGTTATCAC TTTGATGCTTTCCACAGCTCAATGGGCTCCCGGTGTTCTACGCATGGTTC TCCCCGTTTCTGGCCATCTTGTGTTGGCGGGCGCGAGCTCTTACATCTTT CAGGTGATTTTGTGCGGCTTCCTCTTCCTGATCCTGATGGGATCCATCCA CGGGCTGGTATTGGGTTCGATTGTTCTGTCGCTGGTATGA back to topprotein sequence of Ggra9531.t1 >Ggra9531.t1 ID=Ggra9531.t1|Name=Ggra9531.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=430bp
MQPSSTPSQEDYLRKMQVQQKQQAQMNAFYYNVIVAFSKPKDDFKKHDHA FLYEALLYKFDKNDFDEYISSYIDDMFLPVTLAFDDVNLKAGRDEKPLRL RTALALSGPGFGITVTSFSHVVVFLLSAISRLSPLRFFALWAAVGILFAW VSAINLFAACLALDAGRRGAKRRDCCPCFPPVAEVREFNCVVIGWLGACF YGMTQLYLKFWFSLFSPSGSAPREFQDQVDGIEDGSFIEPSIFTTHVKQF LSGGGGLYSEDIILTKNTINICRFDVQYVYRERKNDEITALDSARSRLTL EQYGALPDEIGLSLGRTSLALPLVCFVLEGHPVVAIVCAVVVGLIVIDVF GLTFFSGVNLKAVSVITLMLSTAQWAPGVLRMVLPVSGHLVLAGASSYIF QVILCGFLFLILMGSIHGLVLGSIVLSLV* back to topmRNA from alignment at tig00000873_pilon:699098..705053- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra9531.t1 ID=Ggra9531.t1|Name=Ggra9531.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=5956bp|location=Sequence derived from alignment at tig00000873_pilon:699098..705053- (Gracilaria gracilis GNS1m male) ATGCAGCCATCATCTACTCCGTCTCAAGAAGACTATCTGCGCAAGATGCA
AGTGCAGCAAAAGCAGCAAGCACAAATGAATGCCTTCTATTACAATGTTA
TTGTTGCCTTCTCTAAGCCAAAGGACGATTTCAAGAAACATGATCACGCT
TTTTTGTATGAGGCACTTTTATACAAGTTCGATAAGAATGACTTCGATGA
ATACATTTCGTCGTATATCGATGACATGTTTTTGCCAGTATTTAAGCAAG
TTATCCGCAACAGTATTGAATTCGTTATTAAGCATTACACCTCACCTGCC
GAACGGATCAGGGAGCTAAAAAAATTTTTTCCTGTTCCGCTGCTCCAGAT
AAGAATTGATTATTTATGGCAAGAAATTTACAGGCCGAACCCTCAGTTTA
TGAAGACGGTTAAGGAAAGTATTGGGTCAAAATTTCATGACTATCGAAAC
TTGAAAGAAATGTATGAGGCGTGTTTTAAATTTATTTATAGTGCAATTAA
CAGGAACTTGGATATATTTAATGGATTACTGCTCACAAGGTCGCGTTAAT
AAGCAATTGAAAATGTCTTTGATTATAAATTCTCGTAAAGTTTCTCATAA
AGTTTGTTGTTTTATCTGCGTTTGATTTTTTAGTATTAAATGAGTATGAT
ATTTGAAATATGGGGCCATTTGTTATTGCCACGGGTAATCATTGCCACGG
GTAGTCATTGCCATGGTTCGCAAGCTGATTGGCTTGTCAGTCGTGTTAAA
TATTAATTTATTGACTTGCTCTATTTAGTTCTATTTTCCAGTTTCTGGAT
GCGGTTTATATATTCTTTTTTCTTGTTTACGTTTAAGGTTAAGAATGTTC
TCATCTCCAGATGTAGATGCTTGCACTCCCAGTATTCACTAGGGAATTCA
TAGCATTTCATTGGCACACCTTTGGCGATCGTATCCCATTTTTTTCGAGC
GTTGATGGCGAAAATGCTTTTCCATTCATCACATCCCTCTTTTCCTTTCC
ACGTGCATTGGTTATCGGCCGTCTCAGCTGCCTCGCAATACCCTTTTGCA
ACCAGATTGGCTGCGGCTAAATTGTGAGGCAATCGAAACTGGCTGAAAAC
TTCCGTCACGGGCTTCTTGACTATTTCCAGTTTTTTCTTAAGAGGTCTCT
TGGCCTGTTTGCTGATCTGCTTCTTGATCCTGTCATTCTTTGGGAGCGTG
GTCTTTCCCTTTTGCAGCTTAATGGGACAAAAGGGATGGCTCAACGGGAG
AGGAAGCTGGTAGAGAGCGGTGGAGGGAGAAAAGGGAGAAAAGGGAGAAA
AGGGAGCAAGACGGTACAGGGAAGCGGTGAAGGTTGCACATCCCTTCATT
GTGATAATACTTGAGGTTGGGTGATAGCGCGCCACTGGCGAGGGAGTTTT
TATACCCCTTCTCTATGCCCATGCGTTACGGTTAGTGGTTAGAGATTGTT
CTCATAGGTTAAATCACCATGTTCTCTTTATTAGTCCTCGCGTGTTGACG
GGACTGCCCGTAGATTTGCTTCCTACTTGAACCATACTGACATCATGATC
AAAGGACCTGGCAAGATGGCGCAACAATAAACCTGCGCTTTTCACGGTAC
CCATAAATGGAATGCTCCAATATCAGTATTGCTCGATGGAAGTTGCCAGG
TACGAATGCAATTTTGACACCTACACGTGGCGAACGTGTCTATTCTGTAT
CACCAGGGTGAGCTCATAGGCTAAAAGTTTGGTTTACTTGACCTCGTAAT
TCACCGATATTTGTCAGAGATTTGCTCTTTACTTGAAACAAACTAATTTC
GTAGTAAAAGAAAATAAAAAGACCACGCCAAGTTCAAAAAGGGACTTTGA
CGATAACTCTAAATAAAATGTTCTTATGTCCTTTACTGTCAATAGACCTT
TCGAATCGCGAGCTAAATACTAGCCGTGACACGTGGGGAACCTGTTTCCT
GTGCATGGCCAGGTTCTTATCGTAGGTTACAGTACCAAATCGACGTTGCT
GCATTACACTAGTACCAAGCATTTGCGACTACGTTTGTAAGACCTTATGT
GGCAAAACGTTCACACGTAGTACACAATTTCTGATAGCATACCCTCAGCT
CGCTTCTCATCGCCACACACGTGAATCATGTTTGCAATACACAGTTTGCA
TATACCCTTTCCTCTATAGCTAGAGACACCGTTACCCTAAATGTAGGTCA
CCAGCGAGGAACAACACTTTTAGAGCCGAAGCATGAAACAGACCCAAACA
AGGGGCAGTGCTCTTCAGGCCCTTTACGGAAGAAAGGGAGAAACCAAGGC
GCCAAGGGCAAAAGAAAGGTTGAGGAGGGGGGAAAAAACGGCGGAGGGAA
GCAAGACAAACTTTTCTGTGAAGGAAGGTGAGGGGTTTTTTGCTGAAGGG
AAAATGGTCTGGCGGGAGTTGGTCGAGATGCGACCGCTTCGGCCCTTTTA
TACGCAATTGAACCTTCAAAATTAGACTCCAAACTCATTTCAATTTACAA
TTACCAATAAGGTGCTTACTAGTGCAATATGTCGCCCATCTCTGCCACCC
ACTGCGGAGGCGGTGGCACTTAAATAGAAAGAGAAGCCAGCGAGGACCAT
GCGGTGCATTTCCGTGCACAATACGTACAAAACTAAAATATACGGAAAAT
TTCTAAGTAAAAAACCTTGTAGACTGACGCATTGTGTTCAATACGTGTAC
CGCACACGCTGCGCAGAAACGCGGGCCACAAAACTCAATGCAAAATGTAA
GTAACCATAACAAGTAACCTTTCATTAGACTAAGAAATATTGCTATCGTC
CTCATCTCGACGCTTCTTCCTTCCAGGTCTCTTGCGTGGCTTCTTCGGCA
ACCCGCCCGTGTAAGCCCCATTGCTCTCGGTCGTAGCGTCTTCCTTGCTC
TTCTTATCTTGAACAGATGGCAAACGCGACATTGACTGACTTGCATTGGC
TGAAATCGCGCTAACGACCGAATGTAAACGATCCATCGATTGACTCCCAG
GTAAAATCAAATTAAGAGCAGACTGTTAGACATTCTGCGCTGCGTTCCCA
GAGTTGCTGAGGGAGAGGTATAGCGATTTTCTGCGTAACCCGTACCACGC
GGACCAAAACGCAAAAGCCTCGCTTTTCTCAGATTCACGCATTGAGAGCA
TTCTCCTGGTTTCGAGACTCCCATTGTCGGGTACCGATTCTGCTTGCACA
TGTTCTTGCGCCAGGTGATGTAATTCACGCTGCGTTGCTCGCAATGAACT
CCGTTTCTCCCGTATGGCCGCAGCCTGTGTACAACGTGCGTTCGGTGCCG
CACATATTGTCTGAATAGAAAAGCTGTGATAAAGAAAGATGGTCTCCAGA
GCGAGATGGAGCGCTATATTGTGACGGTTCTTCCACTTGTTCAAGACAGC
TTATTTACAAGTTTGAGCTTATAAGGTTCTTCTACCTCAAAGCTTTCTAC
TGCGTACATCACAGACGACGCCGCAGATTCATCGTCATCAACGTCGCTAT
CATACAACTCGTCCGCTTCATTCTTGAGACAAAGCACCAACGCGCTGCTT
TCGCTAGAGTTCTAGAACAGTTCCTTCGGTCGTGAGACATCGGGGTCGAC
ACTGTGATCATCATCATCCAAACGCTCGCCGTTGGGCAGCTCTAAAAGCG
TTTGATCAAACAGTTGTCAAAACTCTTCGCACTCGAACAGCTCATCGCCA
CCCAGAATGGTGAGTTGCGGTTCTCCATCACCTTGCATGTGGATGCATTT
CTTGGCGATTCCCTTGGCGCGACAACGCTCTTTGTGGTTGGCATGGACGG
ACATTGCAATCGAAAAGCTCATGCTGCCAAGTAGACGTTGAAAGAAGCTC
TAAAATGTGTGGTAGGCATCTTTGAGTCTCGTGGATTTATATCTGTGTAA
GTGTGAGGGTATGTACGAGAGATTGAGCTTGCAATCTTAAAGCTGATGAA
AGAGGAAGTGTTTTTTGACAACGTGGTGTGTGTGGAAAGCGCAGCTGGGG
TGAGTGGTGGGTGTAATCGTGTTTTTGGGGAAGCTTGTGGTGCTGAATTT
GACTTCATGATTATGTTGTTCACGCAACTCATCGACAATAACAAAATCAA
GAATGACCGCGATTGTAGTGAAGTCAAGGACGATGACTTAGAAAGGGTAT
TGGCATCCAACTCCCGCTGTTACAGGACAGCACCCTTCACTGATTTGTCG
AAAGTTTGTGGTTTGAAAATGACTCGCTCTCTGAAGCGCTGGGCGGTCAT
CTTGCACTTTTTCCTTCGATTTTGTCTTGCTCGCCGTGTACGTGATCGTT
TTTCCAGGTGACCTACACGTAGTGCTTTCACACATGTGGCTCGTCGCAGG
AGGGCTGCTCACTACTGGCCTTGCGTTGCGCGTTTGCCTCGGTTTATCGT
CCGCAATCGGCACGTTCTTCGGAGCTGTACATAAAATTTAACATTGCATG
TCATTGGTATTGGTATTGAAGACTGCTTGCAGGTGACGCTTGCATTCGAC
GACGTCAACTTGAAAGCCGGCAGGGATGAAAAGCCACTTCGACTCCGCAC
GGCTTTGGCGCTGAGTGGGCCCGGCTTTGGAATTACTGTCACATCGTTCT
CTCACGTGGTGGTGTTTTTGTTGAGTGCTATCAGTCGTCTGTCTCCGCTT
CGATTCTTTGCGTTGTGGGCTGCGGTCGGTATTTTATTTGCGTGGGTGTC
TGCCATTAACTTATTCGCAGCGTGTCTTGCTCTAGATGCCGGAAGACGGG
GAGCGAAGCGTCGTGATTGCTGCCCTTGCTTCCCACCCGTGGCAGAAGTT
AGAGAATTCAATTGGTTCAAGAAACGTCCAGCGGCTTTAGCGGCTTCTTC
AACAATTGGTCTGGTCCGGTTCTCATGCGTCTGAAAATTTGTATCAACCT
ACTAGTGTTGTTATTGGCTGGCTCGGTGCGTGCTTTTACGGTATGACGCA
GCTGTACCTCAAGTTCTGGTTCTCTCTCTTTTCCCCGTCTGGCTCTGCTC
CACGCGAGTTCCAGGACCAAGTGGACGGGTACTTTTTGTTTGGCAAAATG
ACCAGCATATAAGTACGTGACAGAGACTTCACCACGTCTGAAAACCAACG
AATACAGCTAGAGATCTGTAGAGCAAAGGGAACAATTGCCAAGAACAAGC
GGATCCAGAAGGAAATAGGGGACTGCTGATACCCACAACTACGCGTAATT
CTAAGCATTGAAGATGGCTCGTTCATCGAGCCCAGCATTTTCACCACTCA
TGTAAAGCAGTTCCTATCTGGCGGCGGCGGTCTCTACTCCGAGGACATTA
TCCTCACCAAAAACACCATCAATATTTGTCGCTTCGATGTGCAGTATGTG
TACCGCGAAAGAAAGAACGATGAAATCACCGCGTTGGACTCAGCGAGATC
CAGGCTAACTCTGTTCGCTTCTGCGATGCGGATGGAAATCATGCAGTGTT
TACGTACATATTCTCAGACATATTCAGGGAACAGTACGGTGCGTTGCCAG
ACGAGATCGGACTGTCGTTGGGTCGGACTTCGCTGGCGCTGCCGCTGGTA
TGTTTCGTGTTGGAGGGTCATCCGGTGGTAGCAATTGTATGCGCGGTAGT
GGTAGGCCTCATCGTCATCGACGTGTTCGGACTGACGTTTTTCTCTGGCG
TGAATCTCAAAGCGGTGTCAGTTATCACTTTGATGCTTTCCACAGGTATT
GCGGTGGCCTTTGTGGTACATATCGCCCGTTCACTACTTGATCATGTGAG
CACTCGCGGCGAGTGTGCAATTAACGCGAATAGCTCAATGGGCTCCCGGT
GTTCTACGCATGGTTCTCCCCGTTTCTGGCCATCTTGTGTTGGCGGGCGC
GAGCTCTTACATCTTTCAGGTGATTTTGTGCGGCTTCCTCTTCCTGATCC
TGATGGGATCCATCCACGGGCTGGTATTGGGTTCGATTGTTCTGTCGCTG
GTATGA back to topCoding sequence (CDS) from alignment at tig00000873_pilon:699098..705053- >Ggra9531.t1 ID=Ggra9531.t1|Name=Ggra9531.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1290bp|location=Sequence derived from alignment at tig00000873_pilon:699098..705053- (Gracilaria gracilis GNS1m male) ATGCAGCCATCATCTACTCCGTCTCAAGAAGACTATCTGCGCAAGATGCA AGTGCAGCAAAAGCAGCAAGCACAAATGAATGCCTTCTATTACAATGTTA TTGTTGCCTTCTCTAAGCCAAAGGACGATTTCAAGAAACATGATCACGCT TTTTTGTATGAGGCACTTTTATACAAGTTCGATAAGAATGACTTCGATGA ATACATTTCGTCGTATATCGATGACATGTTTTTGCCAGTGACGCTTGCAT TCGACGACGTCAACTTGAAAGCCGGCAGGGATGAAAAGCCACTTCGACTC CGCACGGCTTTGGCGCTGAGTGGGCCCGGCTTTGGAATTACTGTCACATC GTTCTCTCACGTGGTGGTGTTTTTGTTGAGTGCTATCAGTCGTCTGTCTC CGCTTCGATTCTTTGCGTTGTGGGCTGCGGTCGGTATTTTATTTGCGTGG GTGTCTGCCATTAACTTATTCGCAGCGTGTCTTGCTCTAGATGCCGGAAG ACGGGGAGCGAAGCGTCGTGATTGCTGCCCTTGCTTCCCACCCGTGGCAG AAGTTAGAGAATTCAATTGTGTTGTTATTGGCTGGCTCGGTGCGTGCTTT TACGGTATGACGCAGCTGTACCTCAAGTTCTGGTTCTCTCTCTTTTCCCC GTCTGGCTCTGCTCCACGCGAGTTCCAGGACCAAGTGGACGGCATTGAAG ATGGCTCGTTCATCGAGCCCAGCATTTTCACCACTCATGTAAAGCAGTTC CTATCTGGCGGCGGCGGTCTCTACTCCGAGGACATTATCCTCACCAAAAA CACCATCAATATTTGTCGCTTCGATGTGCAGTATGTGTACCGCGAAAGAA AGAACGATGAAATCACCGCGTTGGACTCAGCGAGATCCAGGCTAACTCTG GAACAGTACGGTGCGTTGCCAGACGAGATCGGACTGTCGTTGGGTCGGAC TTCGCTGGCGCTGCCGCTGGTATGTTTCGTGTTGGAGGGTCATCCGGTGG TAGCAATTGTATGCGCGGTAGTGGTAGGCCTCATCGTCATCGACGTGTTC GGACTGACGTTTTTCTCTGGCGTGAATCTCAAAGCGGTGTCAGTTATCAC TTTGATGCTTTCCACAGCTCAATGGGCTCCCGGTGTTCTACGCATGGTTC TCCCCGTTTCTGGCCATCTTGTGTTGGCGGGCGCGAGCTCTTACATCTTT CAGGTGATTTTGTGCGGCTTCCTCTTCCTGATCCTGATGGGATCCATCCA CGGGCTGGTATTGGGTTCGATTGTTCTGTCGCTGGTATGA back to top
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