Ggra9530.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9530.t1
Unique NameGgra9530.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length332
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000873_piloncontigtig00000873_pilon:520396..521627 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9530Ggra9530Gracilaria gracilis GNS1m malegenetig00000873_pilon 520396..521627 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9530.t1Ggra9530.t1Gracilaria gracilis GNS1m malepolypeptidetig00000873_pilon 520396..521627 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9530.t1.stop1Ggra9530.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000873_pilon 520396..520398 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9530.t1.CDS1Ggra9530.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000873_pilon 520396..521094 -
Ggra9530.t1.CDS2Ggra9530.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000873_pilon 521263..521396 -
Ggra9530.t1.CDS3Ggra9530.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000873_pilon 521465..521627 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9530.t1.exon1Ggra9530.t1.exon1Gracilaria gracilis GNS1m maleexontig00000873_pilon 520396..521094 -
Ggra9530.t1.exon2Ggra9530.t1.exon2Gracilaria gracilis GNS1m maleexontig00000873_pilon 521263..521396 -
Ggra9530.t1.exon3Ggra9530.t1.exon3Gracilaria gracilis GNS1m maleexontig00000873_pilon 521465..521627 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9530.t1.intron1Ggra9530.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000873_pilon 521095..521262 -
Ggra9530.t1.intron2Ggra9530.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000873_pilon 521397..521464 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9530.t1.start1Ggra9530.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000873_pilon 521625..521627 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9530.t1 ID=Ggra9530.t1|Name=Ggra9530.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=332bp
MLRSKDNACATESSKEANKTDTVRSPQTCPEFQNSRGFSQPTTTIPLPPA
ETQHSKMDNVVTISQSARTKQPRIQKTKSMSGRGKAFTEEEALNLAKAWV
KAQKISGVTAEDVEALAIERYRKKAGRKDANGIHQYAPPFKFITAAEYLS
TQPKFEIDLLKDEHQGHRNSAFISQPHHINETSRGLGTSEEDSKERNGSN
ENEVVCKASESRRSNRSRPLGVKRVKHDEYLEKVGVNMNKTLQELSKKVD
AGNEVLLAMRQQNEDLAEADNDCRLLQLLDRDSGEYKNILADVLSRRKHR
MRKRSACDTSEEGGKGKKQKLDDDTVEILDS*
back to top

spliced messenger RNA

>Ggra9530.t1 ID=Ggra9530.t1|Name=Ggra9530.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=996bp|location=Sequence derived from alignment at tig00000873_pilon:520396..521627- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCGAAGCAAAGACAATGCATGCGCAACAGAATCTTCGAAAGAGGC
GAACAAAACAGACACTGTCAGGTCTCCACAAACCTGTCCCGAGTTCCAGA
ATTCCAGGGGTTTCAGTCAACCAACAACCACAATACCATTACCGCCGGCC
GAAACGCAGCACAGTAAAATGGACAATGTAGTAACCATATCGCAGTCTGC
ACGAACAAAGCAGCCCAGAATCCAGAAGACAAAAAGCATGAGTGGGAGAG
GAAAGGCATTTACGGAAGAAGAGGCTCTAAACCTTGCCAAGGCTTGGGTG
AAGGCACAGAAAATCTCAGGAGTGACTGCTGAAGATGTAGAGGCTCTCGC
CATAGAACGTTACAGAAAAAAGGCAGGTAGAAAGGATGCTAACGGTATCC
ATCAATACGCACCACCCTTCAAATTCATCACTGCCGCTGAGTACTTGTCG
ACACAACCAAAGTTTGAGATAGATCTCCTGAAGGATGAGCACCAAGGGCA
CAGAAACAGTGCATTTATCAGCCAGCCGCACCATATTAATGAAACAAGCA
GAGGACTAGGGACATCAGAGGAGGATTCTAAGGAGAGAAATGGCAGCAAC
GAGAACGAAGTAGTATGCAAGGCCTCAGAATCTAGAAGGAGTAACCGCTC
TCGCCCATTAGGTGTTAAACGTGTGAAGCATGACGAGTATCTAGAAAAAG
TTGGAGTCAACATGAACAAGACCTTGCAAGAACTTTCTAAAAAGGTGGAC
GCTGGCAATGAAGTTCTACTTGCGATGAGACAGCAGAATGAGGATCTAGC
GGAGGCCGATAACGACTGCAGACTGCTACAGCTTCTGGATAGGGACTCGG
GGGAATACAAGAACATACTCGCGGACGTTCTTTCCAGGAGAAAGCATCGA
ATGCGCAAAAGAAGCGCATGTGACACAAGTGAGGAAGGAGGGAAGGGAAA
GAAGCAAAAACTGGATGATGATACTGTAGAGATATTGGATTCGTAG
back to top

protein sequence of Ggra9530.t1

>Ggra9530.t1 ID=Ggra9530.t1|Name=Ggra9530.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=332bp
MLRSKDNACATESSKEANKTDTVRSPQTCPEFQNSRGFSQPTTTIPLPPA
ETQHSKMDNVVTISQSARTKQPRIQKTKSMSGRGKAFTEEEALNLAKAWV
KAQKISGVTAEDVEALAIERYRKKAGRKDANGIHQYAPPFKFITAAEYLS
TQPKFEIDLLKDEHQGHRNSAFISQPHHINETSRGLGTSEEDSKERNGSN
ENEVVCKASESRRSNRSRPLGVKRVKHDEYLEKVGVNMNKTLQELSKKVD
AGNEVLLAMRQQNEDLAEADNDCRLLQLLDRDSGEYKNILADVLSRRKHR
MRKRSACDTSEEGGKGKKQKLDDDTVEILDS*
back to top

mRNA from alignment at tig00000873_pilon:520396..521627-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9530.t1 ID=Ggra9530.t1|Name=Ggra9530.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1232bp|location=Sequence derived from alignment at tig00000873_pilon:520396..521627- (Gracilaria gracilis GNS1m male)
ATGCTTCGAAGCAAAGACAATGCATGCGCAACAGAATCTTCGAAAGAGGC
GAACAAAACAGACACTGTCAGGTCTCCACAAACCTGTCCCGAGTTCCAGA
ATTCCAGGGGTTTCAGTCAACCAACAACCACAATACCATTACCGCCGGCC
GAAACGCAGCACAGTAAGTCTACTGACAACACTGATTCACAACAAAAACA
GACTGTACAAATAACCTCTCTTTATTCGCAGGTAAAATGGACAATGTAGT
AACCATATCGCAGTCTGCACGAACAAAGCAGCCCAGAATCCAGAAGACAA
AAAGCATGAGTGGGAGAGGAAAGGCATTTACGGAAGAAGAGGCTCTAAAC
CTTGCCAAGGCTTGGGTAACGCAGTCTATGAAGGGTCCAAATCAGACAGA
GACAACTTTGTGGAACGGGATTGCGTCCATCTGCAATAAGCGCTTCCAGA
TGCAAACAACCAGTGAATCTTTACGCTGTAAATGGGCACAACTGGCGCGT
GGGTCGCAGCATTTTCTTGCCGCACGTAGATAGGTGAAGGCACAGAAAAT
CTCAGGAGTGACTGCTGAAGATGTAGAGGCTCTCGCCATAGAACGTTACA
GAAAAAAGGCAGGTAGAAAGGATGCTAACGGTATCCATCAATACGCACCA
CCCTTCAAATTCATCACTGCCGCTGAGTACTTGTCGACACAACCAAAGTT
TGAGATAGATCTCCTGAAGGATGAGCACCAAGGGCACAGAAACAGTGCAT
TTATCAGCCAGCCGCACCATATTAATGAAACAAGCAGAGGACTAGGGACA
TCAGAGGAGGATTCTAAGGAGAGAAATGGCAGCAACGAGAACGAAGTAGT
ATGCAAGGCCTCAGAATCTAGAAGGAGTAACCGCTCTCGCCCATTAGGTG
TTAAACGTGTGAAGCATGACGAGTATCTAGAAAAAGTTGGAGTCAACATG
AACAAGACCTTGCAAGAACTTTCTAAAAAGGTGGACGCTGGCAATGAAGT
TCTACTTGCGATGAGACAGCAGAATGAGGATCTAGCGGAGGCCGATAACG
ACTGCAGACTGCTACAGCTTCTGGATAGGGACTCGGGGGAATACAAGAAC
ATACTCGCGGACGTTCTTTCCAGGAGAAAGCATCGAATGCGCAAAAGAAG
CGCATGTGACACAAGTGAGGAAGGAGGGAAGGGAAAGAAGCAAAAACTGG
ATGATGATACTGTAGAGATATTGGATTCGTAG
back to top

Coding sequence (CDS) from alignment at tig00000873_pilon:520396..521627-

>Ggra9530.t1 ID=Ggra9530.t1|Name=Ggra9530.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=996bp|location=Sequence derived from alignment at tig00000873_pilon:520396..521627- (Gracilaria gracilis GNS1m male)
ATGCTTCGAAGCAAAGACAATGCATGCGCAACAGAATCTTCGAAAGAGGC
GAACAAAACAGACACTGTCAGGTCTCCACAAACCTGTCCCGAGTTCCAGA
ATTCCAGGGGTTTCAGTCAACCAACAACCACAATACCATTACCGCCGGCC
GAAACGCAGCACAGTAAAATGGACAATGTAGTAACCATATCGCAGTCTGC
ACGAACAAAGCAGCCCAGAATCCAGAAGACAAAAAGCATGAGTGGGAGAG
GAAAGGCATTTACGGAAGAAGAGGCTCTAAACCTTGCCAAGGCTTGGGTG
AAGGCACAGAAAATCTCAGGAGTGACTGCTGAAGATGTAGAGGCTCTCGC
CATAGAACGTTACAGAAAAAAGGCAGGTAGAAAGGATGCTAACGGTATCC
ATCAATACGCACCACCCTTCAAATTCATCACTGCCGCTGAGTACTTGTCG
ACACAACCAAAGTTTGAGATAGATCTCCTGAAGGATGAGCACCAAGGGCA
CAGAAACAGTGCATTTATCAGCCAGCCGCACCATATTAATGAAACAAGCA
GAGGACTAGGGACATCAGAGGAGGATTCTAAGGAGAGAAATGGCAGCAAC
GAGAACGAAGTAGTATGCAAGGCCTCAGAATCTAGAAGGAGTAACCGCTC
TCGCCCATTAGGTGTTAAACGTGTGAAGCATGACGAGTATCTAGAAAAAG
TTGGAGTCAACATGAACAAGACCTTGCAAGAACTTTCTAAAAAGGTGGAC
GCTGGCAATGAAGTTCTACTTGCGATGAGACAGCAGAATGAGGATCTAGC
GGAGGCCGATAACGACTGCAGACTGCTACAGCTTCTGGATAGGGACTCGG
GGGAATACAAGAACATACTCGCGGACGTTCTTTCCAGGAGAAAGCATCGA
ATGCGCAAAAGAAGCGCATGTGACACAAGTGAGGAAGGAGGGAAGGGAAA
GAAGCAAAAACTGGATGATGATACTGTAGAGATATTGGATTCGTAG
back to top