Ggra9521.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9521.t1
Unique NameGgra9521.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length544
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000873_piloncontigtig00000873_pilon:430556..432437 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1121116.KB894769_gene1361
Preferred namegabD
PFAMsAldedh
Max annot lvl28216|Betaproteobacteria
KEGG rclassRC00080
KEGG koko:K00135
KEGG ReactionR00713,R00714,R02401
KEGG Pathwayko00250,ko00310,ko00350,ko00650,ko00760,ko01100,ko01120,map00250,map00310,map00350,map00650,map00760,map01100,map01120
KEGG ModuleM00027
Evalue1.08e-138
EggNOG OGsCOG1012@1|root,COG1012@2|Bacteria,1MU1V@1224|Proteobacteria,2VHGR@28216|Betaproteobacteria,4A9Q8@80864|Comamonadaceae
EC1.2.1.16,1.2.1.20,1.2.1.79
Descriptionbelongs to the aldehyde dehydrogenase family
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9521Ggra9521Gracilaria gracilis GNS1m malegenetig00000873_pilon 430556..432437 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9521.t1Ggra9521.t1Gracilaria gracilis GNS1m malepolypeptidetig00000873_pilon 430556..432437 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9521.t1.stop1Ggra9521.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000873_pilon 430556..430558 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9521.t1.CDS1Ggra9521.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000873_pilon 430556..432122 -
Ggra9521.t1.CDS2Ggra9521.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000873_pilon 432215..432248 -
Ggra9521.t1.CDS3Ggra9521.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000873_pilon 432407..432437 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9521.t1.exon1Ggra9521.t1.exon1Gracilaria gracilis GNS1m maleexontig00000873_pilon 430556..432122 -
Ggra9521.t1.exon2Ggra9521.t1.exon2Gracilaria gracilis GNS1m maleexontig00000873_pilon 432215..432248 -
Ggra9521.t1.exon3Ggra9521.t1.exon3Gracilaria gracilis GNS1m maleexontig00000873_pilon 432407..432437 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9521.t1.intron1Ggra9521.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000873_pilon 432123..432214 -
Ggra9521.t1.intron2Ggra9521.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000873_pilon 432249..432406 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9521.t1.start1Ggra9521.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000873_pilon 432435..432437 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9521.t1 ID=Ggra9521.t1|Name=Ggra9521.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=544bp
MVVGKILGTFGRSNRGPDIGYSPFLGVRRFQSQGSTSLRMTYSSKPKDPV
KPPQPTPTLELRDPTLLPAASFIGNAQAPIRTSHDLRVRNPFNNAIVSRV
TQASNSDVLLAIETADVAHRNWRNSTIQERSSLLRTWYELIKGARDDLAH
IITLENGKPLSEARAEVEYSASFFLWNSQEALHLLQTSATQTPSSQIQVT
QEPIGTVLAITPWNFPLAMLSRKLAPAIAAGCSVIVKPSEETPLSALALA
ELGRRAGALAGLCNVLITTESELVVDEILRANCVRMVTFTGSTIVGKLVA
AKAAQRVLRVALELGGNAPFVIFGDADVNEAINGLLKNKFRASGQTCISA
NRIFVQEGIYEEFVEKARHSLQKLVVGNGLDEDVQVGPMISQKALLKVES
QIDDASAKGARVVLGGEADGNLLPVTLLADVTDAMDCARSETFGPLVPVM
AFQSEEEVWERANQGDAGLAAYVYTTDLGRAMRGVRELKYGMVGINGTAI
TAPSTTFGGMRESGIGREGGLSSLHEFLETKFSMINFGSGMNE*
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spliced messenger RNA

>Ggra9521.t1 ID=Ggra9521.t1|Name=Ggra9521.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1632bp|location=Sequence derived from alignment at tig00000873_pilon:430556..432437- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGTTGGTAAAATCTTAGGTACCTTCGGGCGATCAAACAGAGGGCC
CGATATTGGGTACAGTCCTTTTCTTGGAGTCAGAAGGTTCCAGTCTCAGG
GTTCCACATCGCTCAGGATGACATATTCTTCGAAACCAAAGGACCCTGTC
AAACCACCACAGCCTACTCCTACACTTGAACTGCGAGATCCGACGTTGCT
GCCCGCTGCTTCTTTCATTGGCAACGCACAGGCCCCTATTCGAACCTCTC
ATGATCTTCGAGTTCGCAATCCGTTTAACAATGCTATTGTAAGTCGAGTA
ACACAAGCTTCAAATTCTGATGTATTACTAGCGATTGAAACAGCCGATGT
GGCTCATAGAAACTGGCGAAACTCTACCATTCAAGAGCGGTCTTCACTCC
TTCGTACATGGTATGAGCTCATCAAAGGCGCTCGTGATGATCTAGCTCAC
ATAATCACCCTCGAAAATGGAAAGCCTCTCTCTGAAGCACGTGCTGAAGT
TGAGTACTCGGCGAGCTTCTTCCTCTGGAACTCACAGGAAGCCCTTCACT
TGTTGCAAACATCAGCTACGCAGACCCCCTCAAGTCAGATTCAAGTCACT
CAGGAGCCGATTGGTACCGTACTCGCAATTACTCCATGGAACTTTCCTTT
GGCTATGCTCTCGCGAAAACTGGCACCAGCCATTGCAGCAGGTTGCTCTG
TAATTGTGAAACCATCTGAAGAGACGCCTTTATCTGCACTCGCTCTTGCC
GAGCTTGGTCGTCGAGCAGGTGCTCTGGCAGGTCTTTGTAATGTTCTGAT
CACTACGGAGAGTGAATTAGTAGTGGATGAAATCCTCAGAGCAAACTGTG
TGCGAATGGTGACATTCACGGGGTCAACAATTGTTGGGAAGTTAGTTGCA
GCAAAAGCTGCCCAGCGTGTTCTGCGAGTCGCCTTAGAACTTGGTGGAAA
TGCCCCTTTTGTCATATTTGGTGATGCTGATGTAAACGAAGCTATCAATG
GGCTTCTCAAGAACAAGTTTCGAGCTTCTGGACAAACATGTATTTCAGCA
AACAGGATTTTCGTGCAAGAGGGAATCTACGAGGAGTTCGTCGAAAAGGC
ACGACACTCTCTACAAAAGCTTGTCGTCGGTAATGGTTTGGACGAAGATG
TTCAAGTAGGTCCAATGATCAGCCAGAAAGCCTTGCTCAAGGTAGAAAGC
CAGATAGATGACGCATCGGCAAAGGGAGCGAGGGTAGTTCTGGGAGGCGA
GGCTGATGGAAATCTCTTGCCTGTCACTTTGCTTGCAGATGTCACTGACG
CTATGGACTGTGCCCGATCCGAAACTTTTGGTCCTTTGGTTCCAGTCATG
GCATTTCAAAGTGAGGAGGAGGTATGGGAGAGAGCGAACCAGGGAGACGC
AGGGCTCGCGGCTTATGTGTACACAACTGATCTGGGCAGAGCAATGAGAG
GAGTTCGTGAACTGAAGTATGGTATGGTCGGAATTAATGGTACTGCCATA
ACTGCTCCATCTACCACATTCGGAGGCATGCGCGAAAGCGGTATCGGGCG
AGAGGGTGGGCTTTCAAGCCTTCATGAATTTCTTGAGACTAAGTTCTCTA
TGATTAACTTCGGTTCCGGAATGAACGAATGA
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protein sequence of Ggra9521.t1

>Ggra9521.t1 ID=Ggra9521.t1|Name=Ggra9521.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=544bp
MVVGKILGTFGRSNRGPDIGYSPFLGVRRFQSQGSTSLRMTYSSKPKDPV
KPPQPTPTLELRDPTLLPAASFIGNAQAPIRTSHDLRVRNPFNNAIVSRV
TQASNSDVLLAIETADVAHRNWRNSTIQERSSLLRTWYELIKGARDDLAH
IITLENGKPLSEARAEVEYSASFFLWNSQEALHLLQTSATQTPSSQIQVT
QEPIGTVLAITPWNFPLAMLSRKLAPAIAAGCSVIVKPSEETPLSALALA
ELGRRAGALAGLCNVLITTESELVVDEILRANCVRMVTFTGSTIVGKLVA
AKAAQRVLRVALELGGNAPFVIFGDADVNEAINGLLKNKFRASGQTCISA
NRIFVQEGIYEEFVEKARHSLQKLVVGNGLDEDVQVGPMISQKALLKVES
QIDDASAKGARVVLGGEADGNLLPVTLLADVTDAMDCARSETFGPLVPVM
AFQSEEEVWERANQGDAGLAAYVYTTDLGRAMRGVRELKYGMVGINGTAI
TAPSTTFGGMRESGIGREGGLSSLHEFLETKFSMINFGSGMNE*
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mRNA from alignment at tig00000873_pilon:430556..432437-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9521.t1 ID=Ggra9521.t1|Name=Ggra9521.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1882bp|location=Sequence derived from alignment at tig00000873_pilon:430556..432437- (Gracilaria gracilis GNS1m male)
ATGGTCGTTGGTAAAATCTTAGGTACCTTCGGTACGTGTAGCTAACTTCC
AAGCAAAATTCTCATTGTCGGAACCCGAGTTTTTTGGTCCATGAGAGGCA
GACGTTGCACCGCATCAGAGACCAAAGCTAACGTATTAGTCCTCGTAACT
TCTGGTTTGTTCACCCCCGTCTCATCTGCGAGGTGACAGGGCGATCAAAC
AGAGGGCCCGATATTGGGTACAGGTTCGTATCAGCCAGGCCGTAGACTAT
CCCCGTATCGTTGGCCACATATCGAAATCAAGAATGTTTCCCCACCCATG
TTTCTTGACACGAAGTCCTTTTCTTGGAGTCAGAAGGTTCCAGTCTCAGG
GTTCCACATCGCTCAGGATGACATATTCTTCGAAACCAAAGGACCCTGTC
AAACCACCACAGCCTACTCCTACACTTGAACTGCGAGATCCGACGTTGCT
GCCCGCTGCTTCTTTCATTGGCAACGCACAGGCCCCTATTCGAACCTCTC
ATGATCTTCGAGTTCGCAATCCGTTTAACAATGCTATTGTAAGTCGAGTA
ACACAAGCTTCAAATTCTGATGTATTACTAGCGATTGAAACAGCCGATGT
GGCTCATAGAAACTGGCGAAACTCTACCATTCAAGAGCGGTCTTCACTCC
TTCGTACATGGTATGAGCTCATCAAAGGCGCTCGTGATGATCTAGCTCAC
ATAATCACCCTCGAAAATGGAAAGCCTCTCTCTGAAGCACGTGCTGAAGT
TGAGTACTCGGCGAGCTTCTTCCTCTGGAACTCACAGGAAGCCCTTCACT
TGTTGCAAACATCAGCTACGCAGACCCCCTCAAGTCAGATTCAAGTCACT
CAGGAGCCGATTGGTACCGTACTCGCAATTACTCCATGGAACTTTCCTTT
GGCTATGCTCTCGCGAAAACTGGCACCAGCCATTGCAGCAGGTTGCTCTG
TAATTGTGAAACCATCTGAAGAGACGCCTTTATCTGCACTCGCTCTTGCC
GAGCTTGGTCGTCGAGCAGGTGCTCTGGCAGGTCTTTGTAATGTTCTGAT
CACTACGGAGAGTGAATTAGTAGTGGATGAAATCCTCAGAGCAAACTGTG
TGCGAATGGTGACATTCACGGGGTCAACAATTGTTGGGAAGTTAGTTGCA
GCAAAAGCTGCCCAGCGTGTTCTGCGAGTCGCCTTAGAACTTGGTGGAAA
TGCCCCTTTTGTCATATTTGGTGATGCTGATGTAAACGAAGCTATCAATG
GGCTTCTCAAGAACAAGTTTCGAGCTTCTGGACAAACATGTATTTCAGCA
AACAGGATTTTCGTGCAAGAGGGAATCTACGAGGAGTTCGTCGAAAAGGC
ACGACACTCTCTACAAAAGCTTGTCGTCGGTAATGGTTTGGACGAAGATG
TTCAAGTAGGTCCAATGATCAGCCAGAAAGCCTTGCTCAAGGTAGAAAGC
CAGATAGATGACGCATCGGCAAAGGGAGCGAGGGTAGTTCTGGGAGGCGA
GGCTGATGGAAATCTCTTGCCTGTCACTTTGCTTGCAGATGTCACTGACG
CTATGGACTGTGCCCGATCCGAAACTTTTGGTCCTTTGGTTCCAGTCATG
GCATTTCAAAGTGAGGAGGAGGTATGGGAGAGAGCGAACCAGGGAGACGC
AGGGCTCGCGGCTTATGTGTACACAACTGATCTGGGCAGAGCAATGAGAG
GAGTTCGTGAACTGAAGTATGGTATGGTCGGAATTAATGGTACTGCCATA
ACTGCTCCATCTACCACATTCGGAGGCATGCGCGAAAGCGGTATCGGGCG
AGAGGGTGGGCTTTCAAGCCTTCATGAATTTCTTGAGACTAAGTTCTCTA
TGATTAACTTCGGTTCCGGAATGAACGAATGA
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Coding sequence (CDS) from alignment at tig00000873_pilon:430556..432437-

>Ggra9521.t1 ID=Ggra9521.t1|Name=Ggra9521.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1632bp|location=Sequence derived from alignment at tig00000873_pilon:430556..432437- (Gracilaria gracilis GNS1m male)
ATGGTCGTTGGTAAAATCTTAGGTACCTTCGGGCGATCAAACAGAGGGCC
CGATATTGGGTACAGTCCTTTTCTTGGAGTCAGAAGGTTCCAGTCTCAGG
GTTCCACATCGCTCAGGATGACATATTCTTCGAAACCAAAGGACCCTGTC
AAACCACCACAGCCTACTCCTACACTTGAACTGCGAGATCCGACGTTGCT
GCCCGCTGCTTCTTTCATTGGCAACGCACAGGCCCCTATTCGAACCTCTC
ATGATCTTCGAGTTCGCAATCCGTTTAACAATGCTATTGTAAGTCGAGTA
ACACAAGCTTCAAATTCTGATGTATTACTAGCGATTGAAACAGCCGATGT
GGCTCATAGAAACTGGCGAAACTCTACCATTCAAGAGCGGTCTTCACTCC
TTCGTACATGGTATGAGCTCATCAAAGGCGCTCGTGATGATCTAGCTCAC
ATAATCACCCTCGAAAATGGAAAGCCTCTCTCTGAAGCACGTGCTGAAGT
TGAGTACTCGGCGAGCTTCTTCCTCTGGAACTCACAGGAAGCCCTTCACT
TGTTGCAAACATCAGCTACGCAGACCCCCTCAAGTCAGATTCAAGTCACT
CAGGAGCCGATTGGTACCGTACTCGCAATTACTCCATGGAACTTTCCTTT
GGCTATGCTCTCGCGAAAACTGGCACCAGCCATTGCAGCAGGTTGCTCTG
TAATTGTGAAACCATCTGAAGAGACGCCTTTATCTGCACTCGCTCTTGCC
GAGCTTGGTCGTCGAGCAGGTGCTCTGGCAGGTCTTTGTAATGTTCTGAT
CACTACGGAGAGTGAATTAGTAGTGGATGAAATCCTCAGAGCAAACTGTG
TGCGAATGGTGACATTCACGGGGTCAACAATTGTTGGGAAGTTAGTTGCA
GCAAAAGCTGCCCAGCGTGTTCTGCGAGTCGCCTTAGAACTTGGTGGAAA
TGCCCCTTTTGTCATATTTGGTGATGCTGATGTAAACGAAGCTATCAATG
GGCTTCTCAAGAACAAGTTTCGAGCTTCTGGACAAACATGTATTTCAGCA
AACAGGATTTTCGTGCAAGAGGGAATCTACGAGGAGTTCGTCGAAAAGGC
ACGACACTCTCTACAAAAGCTTGTCGTCGGTAATGGTTTGGACGAAGATG
TTCAAGTAGGTCCAATGATCAGCCAGAAAGCCTTGCTCAAGGTAGAAAGC
CAGATAGATGACGCATCGGCAAAGGGAGCGAGGGTAGTTCTGGGAGGCGA
GGCTGATGGAAATCTCTTGCCTGTCACTTTGCTTGCAGATGTCACTGACG
CTATGGACTGTGCCCGATCCGAAACTTTTGGTCCTTTGGTTCCAGTCATG
GCATTTCAAAGTGAGGAGGAGGTATGGGAGAGAGCGAACCAGGGAGACGC
AGGGCTCGCGGCTTATGTGTACACAACTGATCTGGGCAGAGCAATGAGAG
GAGTTCGTGAACTGAAGTATGGTATGGTCGGAATTAATGGTACTGCCATA
ACTGCTCCATCTACCACATTCGGAGGCATGCGCGAAAGCGGTATCGGGCG
AGAGGGTGGGCTTTCAAGCCTTCATGAATTTCTTGAGACTAAGTTCTCTA
TGATTAACTTCGGTTCCGGAATGAACGAATGA
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