Ggra952.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra952.t1
Unique NameGgra952.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length495
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000049_piloncontigtig00000049_pilon:915967..917530 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra952Ggra952Gracilaria gracilis GNS1m malegenetig00000049_pilon 915967..917530 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra952.t1Ggra952.t1Gracilaria gracilis GNS1m malepolypeptidetig00000049_pilon 915967..917530 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra952.t1.start1Ggra952.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000049_pilon 915967..915969 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra952.t1.CDS1Ggra952.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000049_pilon 915967..916476 +
Ggra952.t1.CDS2Ggra952.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000049_pilon 916556..917530 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra952.t1.exon1Ggra952.t1.exon1Gracilaria gracilis GNS1m maleexontig00000049_pilon 915967..916476 +
Ggra952.t1.exon2Ggra952.t1.exon2Gracilaria gracilis GNS1m maleexontig00000049_pilon 916556..917530 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra952.t1.intron1Ggra952.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000049_pilon 916477..916555 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra952.t1.stop1Ggra952.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000049_pilon 917528..917530 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra952.t1 ID=Ggra952.t1|Name=Ggra952.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=495bp
MTGSETRARTLLAALLLGLALAAAGVALWSLSALQTRLQEDRLTAQAIAL
AETLALQVDTGVPLSDATGFSGGARTLLTSDSALSRVALLDAEGELVASA
GADQPCTMRCLDVDVRSRNPQVGAISEIGDLRLTLAPPAAFRLSGVDPLA
LAAIAALALIGVIYFVSIADPQPQLLPAQLLPALQPRSAHAQCAQHARLQ
PSAVAPTVTPPPSVSPPPSVSPPPSRSPRAARAKRVPLSTPAPSPSLSPS
FSLPASAAGAPSVSVSPPAWLSVSPSPSAPVSPSSAASSSPSAGASASPS
SSVSVSPSANASESPTPSPSPSGSVSPSVSASESPSPWPSLSVSPSSSVS
VSPSVSASESPTPSPSPPDQQCRLVVTDDNEPVVRTRCRCGPMLRESDVV
RTTIVGPQQCVMGCLSDNTQLITECRNARQQEPEQSRFDDFLSLLNDLED
GPLKQCCELTCDGTLTDPEGPTYQCTIPVEEAIMPADPISVPAQ*
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spliced messenger RNA

>Ggra952.t1 ID=Ggra952.t1|Name=Ggra952.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1485bp|location=Sequence derived from alignment at tig00000049_pilon:915967..917530+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGGATCGGAAACCAGGGCGCGAACACTCCTCGCCGCCCTGCTGTT
GGGTCTGGCGTTGGCTGCCGCCGGCGTGGCGCTCTGGTCACTCAGCGCGC
TGCAAACCCGCCTGCAAGAAGATCGCCTGACGGCGCAAGCGATAGCGCTC
GCGGAAACGCTTGCACTTCAGGTGGATACGGGCGTGCCTTTAAGTGATGC
GACAGGTTTCTCCGGCGGCGCGCGAACATTGCTGACCTCTGACTCGGCGC
TGTCCCGTGTGGCGCTGCTGGATGCGGAGGGTGAGCTGGTCGCATCGGCG
GGCGCCGATCAACCCTGTACGATGCGCTGTCTCGATGTCGACGTCAGATC
CCGCAACCCCCAGGTCGGCGCCATCAGCGAGATCGGCGATCTGCGCCTGA
CATTGGCGCCGCCGGCGGCGTTTCGTTTGTCCGGCGTTGACCcgctggcg
ctggcggctatcgcggctttggcgctgATCGGCGTGATTTACTTCGTCTC
CATCGCCGATCCGCAGCCGCAGCTGCTGCCCGCGCAGCTGCTGCCCGCCT
TGCAGCCGCGGTCGGCGCACGCACAGTGCGCGCAGCACGCACGCCTGCAG
CCGTCCGCCGTCGCGCCCACCGTCACGCCGCCGCCGTCCGTGTCGCCGCC
GCCGTCCGTGTCGCCGCCGCCGTCTCGCTCGCCGCGTGCCGCGCGCGCTA
AGCGCGTGCCGCTGTCCACGCCCGCGCCGTCGCCGTCGCTGTCGCCGTCC
TTCTCGCTGCCTGCTTCTGCTGCGGGCGCGCCGTCTGTATCCGTGTCGCC
GCCGGCTTGGCTCTCTGTCTCGCCGTCGCCCAGCGCGCCTGTGTCGCCGT
CGAGCGCCGCTTCGTCATCGCCGTCGGCTGGTGCTTCCGCATCGCCATCC
AGTAGCGTTTCTGTATCGCCGTCGGCCAATGCTTCAGAGTCACCGACGCC
GTCGCCGTCGCCCAGTGGCTCTGTATCGCCGTCGGTCAGTGCTTCTGAGT
CGCCGTCGCCGTGGCCCAGTCTCTCTGTGTCGCCATCCAGTAGCGTTTCG
GTGTCGCCTTCGGTCAGTGCCTCCGAGTCACCGACGCCGTCGCCGTCGCC
GCCCGACCAACAGTGTCGGCTGGTCGTCACCGACGACAACGAGCCTGTTG
TCCGCACGCGATGCAGATGCGGCCCGATGCTGCGCGAATCAGACGTTGTG
CGCACCACAATTGTGGGGCCACAGCAATGCGTCATGGGCTGTCTATCCGA
CAACACCCAACTCATCACCGAGTGCCGTAACGCGCGCCAACAGGAGCCCG
AACAGTCCCGCTTTGATGACTTTCTGTCGCTGCTCAATGACCTTGAAGAC
GGTCCGCTCAAGCAATGCTGTGAACTCACCTGTGATGGCACACTCACCGA
TCCGGAAGGTCCCACTTATCAATGTACAATACCAGTTGAAGAAGCAATAA
TGCCAGCCGATCCCATATCTGTTCCTGCACAGTAA
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protein sequence of Ggra952.t1

>Ggra952.t1 ID=Ggra952.t1|Name=Ggra952.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=495bp
MTGSETRARTLLAALLLGLALAAAGVALWSLSALQTRLQEDRLTAQAIAL
AETLALQVDTGVPLSDATGFSGGARTLLTSDSALSRVALLDAEGELVASA
GADQPCTMRCLDVDVRSRNPQVGAISEIGDLRLTLAPPAAFRLSGVDPLA
LAAIAALALIGVIYFVSIADPQPQLLPAQLLPALQPRSAHAQCAQHARLQ
PSAVAPTVTPPPSVSPPPSVSPPPSRSPRAARAKRVPLSTPAPSPSLSPS
FSLPASAAGAPSVSVSPPAWLSVSPSPSAPVSPSSAASSSPSAGASASPS
SSVSVSPSANASESPTPSPSPSGSVSPSVSASESPSPWPSLSVSPSSSVS
VSPSVSASESPTPSPSPPDQQCRLVVTDDNEPVVRTRCRCGPMLRESDVV
RTTIVGPQQCVMGCLSDNTQLITECRNARQQEPEQSRFDDFLSLLNDLED
GPLKQCCELTCDGTLTDPEGPTYQCTIPVEEAIMPADPISVPAQ*
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mRNA from alignment at tig00000049_pilon:915967..917530+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra952.t1 ID=Ggra952.t1|Name=Ggra952.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1564bp|location=Sequence derived from alignment at tig00000049_pilon:915967..917530+ (Gracilaria gracilis GNS1m male)
ATGACCGGATCGGAAACCAGGGCGCGAACACTCCTCGCCGCCCTGCTGTT
GGGTCTGGCGTTGGCTGCCGCCGGCGTGGCGCTCTGGTCACTCAGCGCGC
TGCAAACCCGCCTGCAAGAAGATCGCCTGACGGCGCAAGCGATAGCGCTC
GCGGAAACGCTTGCACTTCAGGTGGATACGGGCGTGCCTTTAAGTGATGC
GACAGGTTTCTCCGGCGGCGCGCGAACATTGCTGACCTCTGACTCGGCGC
TGTCCCGTGTGGCGCTGCTGGATGCGGAGGGTGAGCTGGTCGCATCGGCG
GGCGCCGATCAACCCTGTACGATGCGCTGTCTCGATGTCGACGTCAGATC
CCGCAACCCCCAGGTCGGCGCCATCAGCGAGATCGGCGATCTGCGCCTGA
CATTGGCGCCGCCGGCGGCGTTTCGTTTGTCCGGCGTTGACCcgctggcg
ctggcggctatcgcggctttggcgctgATCGGCGTGATTTACTTCGTCTC
CATCGCCGATGTCAGCGCCCTCAGCGGCATGACGGGCGCCCGCCTTTGGA
TCACCTGCGCGCTGGCGCCGGCCTTGCGCGCCGCCGCAGCCGCAGCCGCA
GCTGCTGCCCGCGCAGCTGCTGCCCGCCTTGCAGCCGCGGTCGGCGCACG
CACAGTGCGCGCAGCACGCACGCCTGCAGCCGTCCGCCGTCGCGCCCACC
GTCACGCCGCCGCCGTCCGTGTCGCCGCCGCCGTCCGTGTCGCCGCCGCC
GTCTCGCTCGCCGCGTGCCGCGCGCGCTAAGCGCGTGCCGCTGTCCACGC
CCGCGCCGTCGCCGTCGCTGTCGCCGTCCTTCTCGCTGCCTGCTTCTGCT
GCGGGCGCGCCGTCTGTATCCGTGTCGCCGCCGGCTTGGCTCTCTGTCTC
GCCGTCGCCCAGCGCGCCTGTGTCGCCGTCGAGCGCCGCTTCGTCATCGC
CGTCGGCTGGTGCTTCCGCATCGCCATCCAGTAGCGTTTCTGTATCGCCG
TCGGCCAATGCTTCAGAGTCACCGACGCCGTCGCCGTCGCCCAGTGGCTC
TGTATCGCCGTCGGTCAGTGCTTCTGAGTCGCCGTCGCCGTGGCCCAGTC
TCTCTGTGTCGCCATCCAGTAGCGTTTCGGTGTCGCCTTCGGTCAGTGCC
TCCGAGTCACCGACGCCGTCGCCGTCGCCGCCCGACCAACAGTGTCGGCT
GGTCGTCACCGACGACAACGAGCCTGTTGTCCGCACGCGATGCAGATGCG
GCCCGATGCTGCGCGAATCAGACGTTGTGCGCACCACAATTGTGGGGCCA
CAGCAATGCGTCATGGGCTGTCTATCCGACAACACCCAACTCATCACCGA
GTGCCGTAACGCGCGCCAACAGGAGCCCGAACAGTCCCGCTTTGATGACT
TTCTGTCGCTGCTCAATGACCTTGAAGACGGTCCGCTCAAGCAATGCTGT
GAACTCACCTGTGATGGCACACTCACCGATCCGGAAGGTCCCACTTATCA
ATGTACAATACCAGTTGAAGAAGCAATAATGCCAGCCGATCCCATATCTG
TTCCTGCACAGTAA
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Coding sequence (CDS) from alignment at tig00000049_pilon:915967..917530+

>Ggra952.t1 ID=Ggra952.t1|Name=Ggra952.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1485bp|location=Sequence derived from alignment at tig00000049_pilon:915967..917530+ (Gracilaria gracilis GNS1m male)
ATGACCGGATCGGAAACCAGGGCGCGAACACTCCTCGCCGCCCTGCTGTT
GGGTCTGGCGTTGGCTGCCGCCGGCGTGGCGCTCTGGTCACTCAGCGCGC
TGCAAACCCGCCTGCAAGAAGATCGCCTGACGGCGCAAGCGATAGCGCTC
GCGGAAACGCTTGCACTTCAGGTGGATACGGGCGTGCCTTTAAGTGATGC
GACAGGTTTCTCCGGCGGCGCGCGAACATTGCTGACCTCTGACTCGGCGC
TGTCCCGTGTGGCGCTGCTGGATGCGGAGGGTGAGCTGGTCGCATCGGCG
GGCGCCGATCAACCCTGTACGATGCGCTGTCTCGATGTCGACGTCAGATC
CCGCAACCCCCAGGTCGGCGCCATCAGCGAGATCGGCGATCTGCGCCTGA
CATTGGCGCCGCCGGCGGCGTTTCGTTTGTCCGGCGTTGACCcgctggcg
ctggcggctatcgcggctttggcgctgATCGGCGTGATTTACTTCGTCTC
CATCGCCGATCCGCAGCCGCAGCTGCTGCCCGCGCAGCTGCTGCCCGCCT
TGCAGCCGCGGTCGGCGCACGCACAGTGCGCGCAGCACGCACGCCTGCAG
CCGTCCGCCGTCGCGCCCACCGTCACGCCGCCGCCGTCCGTGTCGCCGCC
GCCGTCCGTGTCGCCGCCGCCGTCTCGCTCGCCGCGTGCCGCGCGCGCTA
AGCGCGTGCCGCTGTCCACGCCCGCGCCGTCGCCGTCGCTGTCGCCGTCC
TTCTCGCTGCCTGCTTCTGCTGCGGGCGCGCCGTCTGTATCCGTGTCGCC
GCCGGCTTGGCTCTCTGTCTCGCCGTCGCCCAGCGCGCCTGTGTCGCCGT
CGAGCGCCGCTTCGTCATCGCCGTCGGCTGGTGCTTCCGCATCGCCATCC
AGTAGCGTTTCTGTATCGCCGTCGGCCAATGCTTCAGAGTCACCGACGCC
GTCGCCGTCGCCCAGTGGCTCTGTATCGCCGTCGGTCAGTGCTTCTGAGT
CGCCGTCGCCGTGGCCCAGTCTCTCTGTGTCGCCATCCAGTAGCGTTTCG
GTGTCGCCTTCGGTCAGTGCCTCCGAGTCACCGACGCCGTCGCCGTCGCC
GCCCGACCAACAGTGTCGGCTGGTCGTCACCGACGACAACGAGCCTGTTG
TCCGCACGCGATGCAGATGCGGCCCGATGCTGCGCGAATCAGACGTTGTG
CGCACCACAATTGTGGGGCCACAGCAATGCGTCATGGGCTGTCTATCCGA
CAACACCCAACTCATCACCGAGTGCCGTAACGCGCGCCAACAGGAGCCCG
AACAGTCCCGCTTTGATGACTTTCTGTCGCTGCTCAATGACCTTGAAGAC
GGTCCGCTCAAGCAATGCTGTGAACTCACCTGTGATGGCACACTCACCGA
TCCGGAAGGTCCCACTTATCAATGTACAATACCAGTTGAAGAAGCAATAA
TGCCAGCCGATCCCATATCTGTTCCTGCACAGTAA
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