Ggra9500.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9500.t1
Unique NameGgra9500.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length210
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000873_piloncontigtig00000873_pilon:294914..298043 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9500Ggra9500Gracilaria gracilis GNS1m malegenetig00000873_pilon 294914..298043 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9500.t1Ggra9500.t1Gracilaria gracilis GNS1m malepolypeptidetig00000873_pilon 294914..298043 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9500.t1.start1Ggra9500.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000873_pilon 294914..294916 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9500.t1.CDS1Ggra9500.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000873_pilon 294914..295142 +
Ggra9500.t1.CDS2Ggra9500.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000873_pilon 297643..298043 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9500.t1.exon1Ggra9500.t1.exon1Gracilaria gracilis GNS1m maleexontig00000873_pilon 294914..295142 +
Ggra9500.t1.exon2Ggra9500.t1.exon2Gracilaria gracilis GNS1m maleexontig00000873_pilon 297643..298043 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9500.t1.intron1Ggra9500.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000873_pilon 295143..297642 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9500.t1.stop1Ggra9500.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000873_pilon 298041..298043 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9500.t1 ID=Ggra9500.t1|Name=Ggra9500.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=210bp
MCETRGQKPSAAELTRQKLSETEPLVKFRRQTEYLDEDTSFTYTRGVKKG
SVDIWLITGVLTFLVPLIGFAIGVATDAELLREAHARRPRCACKELYVLG
VSDIRGAQLPVWMITFQVVDLREGFPWGETVSVMVLFVLLDQYVQDLKAK
NDVWCRYNRDTHADRIRSGFVEMVRNVFAGNAPRQEVPQVWLLAMLECAV
ERDQRVESD*
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spliced messenger RNA

>Ggra9500.t1 ID=Ggra9500.t1|Name=Ggra9500.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=630bp|location=Sequence derived from alignment at tig00000873_pilon:294914..298043+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCGAGACGCGCGGTCAGAAGCCGTCTGCCGCGGAGTTGACACGCCA
GAAACTCAGTGAGACTGAGCCGTTGGTCAAGTTCAGAAGACAGACAGAGT
ACTTGGATGAGGACACGTCGTTCACGTATACTCGAGGCGTCAAGAAAGGT
TCGGTTGATATCTGGCTCATTACGGGCGTACTCACCTTTTTGGTACCGCT
TATTGGATTTGCTATTGGTGTGGCTACTGATGCCGAGCTCCTGCGGGAAG
CCCATGCGCGTCGACCAAGATGTGCATGCAAGGAGCTGTATGTGCTGGGC
GTAAGCGACATAAGAGGTGCACAGCTCCCCGTGTGGATGATAACTTTTCA
GGTGGTAGATCTCCGCGAGGGATTCCCGTGGGGGGAAACTGTGTCAGTAA
TGGTTCTGTTTGTGTTGCTGGATCAGTATGTGCAGGATCTCAAAGCAAAA
AACGATGTGTGGTGCCGATACAACCGGGACACCCATGCGGACAGGATCCG
TTCTGGGTTTGTCGAAATGGTTCGAAATGTGTTCGCGGGCAATGCACCTC
GCCAAGAAGTCCCACAGGTCTGGCTGTTAGCGATGCTGGAATGCGCTGTG
GAAAGGGATCAGCGTGTAGAAAGCGACTAA
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protein sequence of Ggra9500.t1

>Ggra9500.t1 ID=Ggra9500.t1|Name=Ggra9500.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=210bp
MCETRGQKPSAAELTRQKLSETEPLVKFRRQTEYLDEDTSFTYTRGVKKG
SVDIWLITGVLTFLVPLIGFAIGVATDAELLREAHARRPRCACKELYVLG
VSDIRGAQLPVWMITFQVVDLREGFPWGETVSVMVLFVLLDQYVQDLKAK
NDVWCRYNRDTHADRIRSGFVEMVRNVFAGNAPRQEVPQVWLLAMLECAV
ERDQRVESD*
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mRNA from alignment at tig00000873_pilon:294914..298043+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9500.t1 ID=Ggra9500.t1|Name=Ggra9500.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=3130bp|location=Sequence derived from alignment at tig00000873_pilon:294914..298043+ (Gracilaria gracilis GNS1m male)
ATGTGCGAGACGCGCGGTCAGAAGCCGTCTGCCGCGGAGTTGACACGCCA
GAAACTCAGTGAGACTGAGCCGTTGGTCAAGTTCAGAAGACAGACAGAGT
ACTTGGATGAGGACACGTCGTTCACGTATACTCGAGGCGTCAAGAAAGGT
TCGGTTGATATCTGGCTCATTACGGGCGTACTCACCTTTTTGGTACCGCT
TATTGGATTTGCTATTGGTGTGGCTACTGGTAATATAGACATCAACCCAA
GATGAGGACGCGCTTGAAAACCGCTCGCGATCTGATGGCCGATGATAGAC
ACGGCTTTGTCGCTCCGACATCCACTTTTCTCATCTAAGTATTTTGTATA
GACGTAAAGCGCTGTTTATGAGTTGTTTTCTAGAAATATGTCAGTGTGCC
GGACCCCGTGCTATCCATTCTGGATGATGAACGCGTCGCCAGGCCGACGC
AACTGCGCCCGCGCACGAGACGGTCGGGTGGTGGCCGATCTAGATCGTCG
GGTGGACCGAAAGGCGAACTCTATTCTGGTACCGGATATGTTTTGCGTTC
ACCTTAGATGGAAAGCCGGTCAAGACTGAAAGCGACATCGTGGGAATAAA
ATACGAAGAGGTATTGAAACTAGGGTCTCGTTGATTTGCTTCCATGCTCT
TCAGAGTCAGAGAAGAACCCAAGGAACGTGCCTTAAGGGCCAGCGATGCA
GCCGTTCTTTGAATGAAGGCACTGCGTTCGGCTCACACCACTTTCGAGTG
GTTGGTCACTTTTGAAATATGTGTCTTCTCTACATCCCATCCCCTCTTAT
CAAGGCAGAAAACGGTTCAGTCGTGCTGCGGAGAACGTTGTCCCTTCATA
TCCCCTCATATACGCCTCGCGACGCGAGCTTGCTGTACCCTTTCGTCAAT
GCCTCTTTGTTCGTAGAGACGTTGGTGCCAACTCCGCAACAAAACACACA
CAGATGCAACGCGAGTCATTCCGCGCCGCGCTCTGCTGGAGACTTGTTCC
ACAAGTTGTTAAAATCAGCTTTTGATCCATTGTTCGGTGGTTTCCAAACC
ACCATGGTGCTCGTGATGGAGTAAGACGCCGCATATTTGTTCAGCTGTTA
GACTTTCTGTTTATGTGAAGAACGGATTGGTCATGCTATGTCGAAGAGCT
GGTGATTTTCAGTTGTCTATAGCTTCGGAACACACATGCACATATATCTC
TCCTCTGACACGCAATGGTTTACCTTCATACTCTCGCAAAGTGGCGCTTC
GGTCAATTACGCTGCTGGTTGCGGTTTTATCCATTGTGGACGAACGTGGC
AGTTGGAAAATAGTATTCCTACTCCGTGGAAGGTTAAACTCGATTCGCAC
AACTGGATTGAAAGGGTTAATACGACCGTGTACAATCATGTGACTGCACT
CATCCGAGGTATGATATGGATGGGGCCTTCCCATGCGCCGTTGTCGTCAT
GAGCACCAAGGATGCATTCTGCAATACTCAGCCAAATGCAGAGAGGTTCT
CTCGCTTAGCATCATGACTTCGCCGTGCGTTATGCATTTCGCACTGCACC
TTCGAAGTTTTTGTCAGGCCATTGCGTTCGGTACGCGTGCGCATTTTCCG
TGTACTTTGGGCAGTAAACCCTCTCCTCCAACGCCCGCACTCCACCCCCC
TTGATTGCGGGAACAGACTTCTTCCATATCATTTCCGAGGTTTAGAGAAG
GTCGTATTCTCCACGGTAACTCAACGACCGATTTCATGTCATCGGCAGTC
CATCAGCCATCCGTCCATATTTTACAGAACCAGCAGCAGTCGTGAGTTCA
AGGGGACCCAAGATGTCTTCTCGACTTTTGATCTTCATACTGGTGACTGT
GTGTGCTGCAAGCGAAGTCTCCGCTGAGTCAGAAAAGATCCTTTCGGTTC
ACTTGGGCAATGTCGAGGGATTTGCATGCCGTGCTTGCCCCAAAGGAGCA
GGTTGCGTAGGGCCGCGTCATAGAAAGCTATGTGTTATTCCAAAGACTGT
TGGTAAGCGTTGTGGGAAGCATCCGTACTCGGTTTGCCAGAGAGGATTAG
CGTGTGTCAATCATGTTTGCACTTCTCGTCGTTTGAAAGTTGGAATGAGT
TGTACTCAAGAATCATTTTGTGAGCCTGGTGCTCTGTGTGTGGGACCTCC
GCAGCGCAAAAAGTGTGTGACACCCATCAGCGTTGGACATAGCTGTGAGC
AGAACCCATATTTGGTTTGTGGAACCGGTTTAGAATGCAACCAAGGCATC
TGTGTGAGGAAAATTTCCGTTGGAGAAAGTTGTCTAACCCCCGGTTCTAC
TTGTACAGACGGGACGCTTTGTGCAGGAATCTTCAACAGAAAAGTTTGCG
TGATACCGAAACCACTAGGACACCAATGCGGACAGAATCCATTCTCGGTC
TGCCGAAAAGGTTTGAACTGTCTTCATGGGCGATGTTCCTCCATGAGAGG
TTTTGGCAATCCTCGTGCAGGAGGCCCCAGCGTCGGAAGTGCGGGGAAGC
GTTGCGGAAGGGGGCGGAAGTGTGCCAACCGGCTCAAATGTCAGAGAGGA
ACATGCCGAATTCGGAGGAAGCACAATTGCACTGCTAACAGAAGTGCGTG
TGTTTTGGGTACTGTTTGTGCCGGACCGTCACACAAACCCCGATGTGTTC
GACCGATGAAAGCGGGAAAATCATGCAAACGTGATCTATACCGGATTTGT
GCTCATGGTTTAACATGCCAGCACGGTAGATGCCGAGCTCCTGCGGGAAG
CCCATGCGCGTCGACCAAGATGTGCATGCAAGGAGCTGTATGTGCTGGGC
GTAAGCGACATAAGAGGTGCACAGCTCCCCGTGTGGATGATAACTTTTCA
GGTGGTAGATCTCCGCGAGGGATTCCCGTGGGGGGAAACTGTGTCAGTAA
TGGTTCTGTTTGTGTTGCTGGATCAGTATGTGCAGGATCTCAAAGCAAAA
AACGATGTGTGGTGCCGATACAACCGGGACACCCATGCGGACAGGATCCG
TTCTGGGTTTGTCGAAATGGTTCGAAATGTGTTCGCGGGCAATGCACCTC
GCCAAGAAGTCCCACAGGTCTGGCTGTTAGCGATGCTGGAATGCGCTGTG
GAAAGGGATCAGCGTGTAGAAAGCGACTAA
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Coding sequence (CDS) from alignment at tig00000873_pilon:294914..298043+

>Ggra9500.t1 ID=Ggra9500.t1|Name=Ggra9500.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=630bp|location=Sequence derived from alignment at tig00000873_pilon:294914..298043+ (Gracilaria gracilis GNS1m male)
ATGTGCGAGACGCGCGGTCAGAAGCCGTCTGCCGCGGAGTTGACACGCCA
GAAACTCAGTGAGACTGAGCCGTTGGTCAAGTTCAGAAGACAGACAGAGT
ACTTGGATGAGGACACGTCGTTCACGTATACTCGAGGCGTCAAGAAAGGT
TCGGTTGATATCTGGCTCATTACGGGCGTACTCACCTTTTTGGTACCGCT
TATTGGATTTGCTATTGGTGTGGCTACTGATGCCGAGCTCCTGCGGGAAG
CCCATGCGCGTCGACCAAGATGTGCATGCAAGGAGCTGTATGTGCTGGGC
GTAAGCGACATAAGAGGTGCACAGCTCCCCGTGTGGATGATAACTTTTCA
GGTGGTAGATCTCCGCGAGGGATTCCCGTGGGGGGAAACTGTGTCAGTAA
TGGTTCTGTTTGTGTTGCTGGATCAGTATGTGCAGGATCTCAAAGCAAAA
AACGATGTGTGGTGCCGATACAACCGGGACACCCATGCGGACAGGATCCG
TTCTGGGTTTGTCGAAATGGTTCGAAATGTGTTCGCGGGCAATGCACCTC
GCCAAGAAGTCCCACAGGTCTGGCTGTTAGCGATGCTGGAATGCGCTGTG
GAAAGGGATCAGCGTGTAGAAAGCGACTAA
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