Ggra950.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra950.t1
Unique NameGgra950.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length393
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000049_piloncontigtig00000049_pilon:913759..914937 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog331869.BAL199_24174
PFAMsABC_sub_bind
Max annot lvl2|Bacteria
KEGG koko:K01989
KEGG ModuleM00247
Evalue1.73e-113
EggNOG OGsCOG2984@1|root,COG2984@2|Bacteria
DescriptionABC transporter substrate binding protein
COG categoryS
BRITEko00000,ko00002,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra950Ggra950Gracilaria gracilis GNS1m malegenetig00000049_pilon 913759..914937 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra950.t1.stop1Ggra950.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000049_pilon 913759..913761 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra950.t1.CDS1Ggra950.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000049_pilon 913759..914937 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra950.t1.exon1Ggra950.t1.exon1Gracilaria gracilis GNS1m maleexontig00000049_pilon 913759..914937 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra950.t1.start1Ggra950.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000049_pilon 914935..914937 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra950.t1Ggra950.t1Gracilaria gracilis GNS1m malepolypeptidetig00000049_pilon 913759..914937 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra950.t1 ID=Ggra950.t1|Name=Ggra950.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=393bp
MRYLLAAFLIVLASIAQAQVERPNIDWLVYDRTSDGYDIDKDAGDPARHE
LTPKWSDTAPDNWDHVILMIPKKSITAYSVSVGSILATFRERRRAARFSI
WYFNNDKVVGQEALDWAEAEGADLILTVGSDATIFVHEAYRRGKIPVVTS
ASKDPVLMGQIDAYDGGSGHNIAYTSINVRVETLISKLRQVFADLENITI
LYARKNKSAVQTQVNPLKDFAADPSQNLTVGEVVVEDAGSAAVDLRQRMP
GAVAALKKADPEGRKSIFWISGSTSVYANIGLINELSGGIPVLAALPDVV
RSGPDSAVLSIGVNQSSAVHLAALYAISVLDGSADVGALPVGQVSPPDIA
INFMKVEEMGLTLPFTFFEDATFIYNRAGQTAREFGQRVPVN*
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spliced messenger RNA

>Ggra950.t1 ID=Ggra950.t1|Name=Ggra950.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1179bp|location=Sequence derived from alignment at tig00000049_pilon:913759..914937- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGATATTTACTGGCCGCCTTCCTGATCGTCCTCGCCTCTATCGCGCA
AGCGCAGGTTGAGCGTCCGAATATCGACTGGCTGGTCTATGACCGAACCT
CTGACGGCTATGACATCGACAAGGACGCAGGCGATCCGGCCCGGCATGAG
CTGACGCCGAAATGGTCGGATACGGCGCCTGATAACTGGGATCATGTCAT
CCTGATGATCCCGAAAAAGTCGATCACCGCCTATTCGGTTTCGGTCGGCT
CAATCCTTGCGACGTTCCGCGAACGGCGCAGGGCTGCGCGGTTTTCCATC
TGGTATTTCAACAATGACAAAGTGGTCGGGCAGGAAGCGCTCGACTGGGC
TGAGGCGGAAGGCGCTGATCTGATCCTGACAGTCGGCTCGGACGCGACGA
TCTTTGTGCATGAGGCCTATCGCCGCGGGAAAATTCCCGTCGTGACATCT
GCTTCGAAAGACCCGGTTCTGATGGGCCAGATCGACGCCTATGATGGCGG
GTCCGGGCACAACATCGCATATACGTCGATCAATGTGCGGGTTGAGACGC
TGATCTCGAAGCTCCGCCAGGTGTTCGCCGACCTTGAGAACATCACCATC
CTCTACGCCCGAAAGAACAAGTCCGCGGTGCAGACACAAGTGAACCCGTT
GAAAGACTTCGCCGCCGATCCGTCGCAAAACCTGACCGTCGGCGAAGTTG
TCGTCGAGGATGCAGGCAGCGCCGCCGTCGACCTACGCCAGCGTATGCCC
GGCGCCGTCGCCGCGTTGAAAAAGGCGGATCCGGAAGGGCGCAAGAGCAT
TTTCTGGATCAGCGGCTCAACCAGCGTTTACGCCAATATCGGCCTGATCA
ATGAATTGTCGGGCGGCATCCCGGTGCTGGCCGCCCTGCCCGATGTGGTG
CGCTCCGGCCCGGACAGCGCAGTGCTGTCCATCGGCGTCAACCAATCCTC
CGCCGTACATCTGGCGGCGCTTTATGCGATCAGTGTGCTGGATGGCTCGG
CTGACGTCGGCGCGCTGCCGGTCGGACAAGTTTCGCCCCCCGATATCGCG
ATCAACTTCATGAAGGTTGAGGAAATGGGCCTGACCCTGCCCTTCACCTT
CTTTGAAGACGCCACATTCATCTACAACCGGGCCGGCCAAACAGCGCGAG
AGTTTGGCCAGCGCGTGCCCGTGAACTGA
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protein sequence of Ggra950.t1

>Ggra950.t1 ID=Ggra950.t1|Name=Ggra950.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=393bp
MRYLLAAFLIVLASIAQAQVERPNIDWLVYDRTSDGYDIDKDAGDPARHE
LTPKWSDTAPDNWDHVILMIPKKSITAYSVSVGSILATFRERRRAARFSI
WYFNNDKVVGQEALDWAEAEGADLILTVGSDATIFVHEAYRRGKIPVVTS
ASKDPVLMGQIDAYDGGSGHNIAYTSINVRVETLISKLRQVFADLENITI
LYARKNKSAVQTQVNPLKDFAADPSQNLTVGEVVVEDAGSAAVDLRQRMP
GAVAALKKADPEGRKSIFWISGSTSVYANIGLINELSGGIPVLAALPDVV
RSGPDSAVLSIGVNQSSAVHLAALYAISVLDGSADVGALPVGQVSPPDIA
INFMKVEEMGLTLPFTFFEDATFIYNRAGQTAREFGQRVPVN*
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mRNA from alignment at tig00000049_pilon:913759..914937-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra950.t1 ID=Ggra950.t1|Name=Ggra950.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1179bp|location=Sequence derived from alignment at tig00000049_pilon:913759..914937- (Gracilaria gracilis GNS1m male)
ATGCGATATTTACTGGCCGCCTTCCTGATCGTCCTCGCCTCTATCGCGCA
AGCGCAGGTTGAGCGTCCGAATATCGACTGGCTGGTCTATGACCGAACCT
CTGACGGCTATGACATCGACAAGGACGCAGGCGATCCGGCCCGGCATGAG
CTGACGCCGAAATGGTCGGATACGGCGCCTGATAACTGGGATCATGTCAT
CCTGATGATCCCGAAAAAGTCGATCACCGCCTATTCGGTTTCGGTCGGCT
CAATCCTTGCGACGTTCCGCGAACGGCGCAGGGCTGCGCGGTTTTCCATC
TGGTATTTCAACAATGACAAAGTGGTCGGGCAGGAAGCGCTCGACTGGGC
TGAGGCGGAAGGCGCTGATCTGATCCTGACAGTCGGCTCGGACGCGACGA
TCTTTGTGCATGAGGCCTATCGCCGCGGGAAAATTCCCGTCGTGACATCT
GCTTCGAAAGACCCGGTTCTGATGGGCCAGATCGACGCCTATGATGGCGG
GTCCGGGCACAACATCGCATATACGTCGATCAATGTGCGGGTTGAGACGC
TGATCTCGAAGCTCCGCCAGGTGTTCGCCGACCTTGAGAACATCACCATC
CTCTACGCCCGAAAGAACAAGTCCGCGGTGCAGACACAAGTGAACCCGTT
GAAAGACTTCGCCGCCGATCCGTCGCAAAACCTGACCGTCGGCGAAGTTG
TCGTCGAGGATGCAGGCAGCGCCGCCGTCGACCTACGCCAGCGTATGCCC
GGCGCCGTCGCCGCGTTGAAAAAGGCGGATCCGGAAGGGCGCAAGAGCAT
TTTCTGGATCAGCGGCTCAACCAGCGTTTACGCCAATATCGGCCTGATCA
ATGAATTGTCGGGCGGCATCCCGGTGCTGGCCGCCCTGCCCGATGTGGTG
CGCTCCGGCCCGGACAGCGCAGTGCTGTCCATCGGCGTCAACCAATCCTC
CGCCGTACATCTGGCGGCGCTTTATGCGATCAGTGTGCTGGATGGCTCGG
CTGACGTCGGCGCGCTGCCGGTCGGACAAGTTTCGCCCCCCGATATCGCG
ATCAACTTCATGAAGGTTGAGGAAATGGGCCTGACCCTGCCCTTCACCTT
CTTTGAAGACGCCACATTCATCTACAACCGGGCCGGCCAAACAGCGCGAG
AGTTTGGCCAGCGCGTGCCCGTGAACTGA
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Coding sequence (CDS) from alignment at tig00000049_pilon:913759..914937-

>Ggra950.t1 ID=Ggra950.t1|Name=Ggra950.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1179bp|location=Sequence derived from alignment at tig00000049_pilon:913759..914937- (Gracilaria gracilis GNS1m male)
ATGCGATATTTACTGGCCGCCTTCCTGATCGTCCTCGCCTCTATCGCGCA
AGCGCAGGTTGAGCGTCCGAATATCGACTGGCTGGTCTATGACCGAACCT
CTGACGGCTATGACATCGACAAGGACGCAGGCGATCCGGCCCGGCATGAG
CTGACGCCGAAATGGTCGGATACGGCGCCTGATAACTGGGATCATGTCAT
CCTGATGATCCCGAAAAAGTCGATCACCGCCTATTCGGTTTCGGTCGGCT
CAATCCTTGCGACGTTCCGCGAACGGCGCAGGGCTGCGCGGTTTTCCATC
TGGTATTTCAACAATGACAAAGTGGTCGGGCAGGAAGCGCTCGACTGGGC
TGAGGCGGAAGGCGCTGATCTGATCCTGACAGTCGGCTCGGACGCGACGA
TCTTTGTGCATGAGGCCTATCGCCGCGGGAAAATTCCCGTCGTGACATCT
GCTTCGAAAGACCCGGTTCTGATGGGCCAGATCGACGCCTATGATGGCGG
GTCCGGGCACAACATCGCATATACGTCGATCAATGTGCGGGTTGAGACGC
TGATCTCGAAGCTCCGCCAGGTGTTCGCCGACCTTGAGAACATCACCATC
CTCTACGCCCGAAAGAACAAGTCCGCGGTGCAGACACAAGTGAACCCGTT
GAAAGACTTCGCCGCCGATCCGTCGCAAAACCTGACCGTCGGCGAAGTTG
TCGTCGAGGATGCAGGCAGCGCCGCCGTCGACCTACGCCAGCGTATGCCC
GGCGCCGTCGCCGCGTTGAAAAAGGCGGATCCGGAAGGGCGCAAGAGCAT
TTTCTGGATCAGCGGCTCAACCAGCGTTTACGCCAATATCGGCCTGATCA
ATGAATTGTCGGGCGGCATCCCGGTGCTGGCCGCCCTGCCCGATGTGGTG
CGCTCCGGCCCGGACAGCGCAGTGCTGTCCATCGGCGTCAACCAATCCTC
CGCCGTACATCTGGCGGCGCTTTATGCGATCAGTGTGCTGGATGGCTCGG
CTGACGTCGGCGCGCTGCCGGTCGGACAAGTTTCGCCCCCCGATATCGCG
ATCAACTTCATGAAGGTTGAGGAAATGGGCCTGACCCTGCCCTTCACCTT
CTTTGAAGACGCCACATTCATCTACAACCGGGCCGGCCAAACAGCGCGAG
AGTTTGGCCAGCGCGTGCCCGTGAACTGA
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