Ggra9493.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9493.t1
Unique NameGgra9493.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length126
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000873_piloncontigtig00000873_pilon:178935..179363 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9493Ggra9493Gracilaria gracilis GNS1m malegenetig00000873_pilon 178935..179363 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9493.t1Ggra9493.t1Gracilaria gracilis GNS1m malepolypeptidetig00000873_pilon 178935..179363 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9493.t1.stop1Ggra9493.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000873_pilon 178935..178937 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9493.t1.CDS1Ggra9493.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000873_pilon 178935..179296 -
Ggra9493.t1.CDS2Ggra9493.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000873_pilon 179348..179363 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9493.t1.exon1Ggra9493.t1.exon1Gracilaria gracilis GNS1m maleexontig00000873_pilon 178935..179296 -
Ggra9493.t1.exon2Ggra9493.t1.exon2Gracilaria gracilis GNS1m maleexontig00000873_pilon 179348..179363 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9493.t1.intron1Ggra9493.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000873_pilon 179297..179347 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9493.t1.start1Ggra9493.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000873_pilon 179361..179363 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9493.t1 ID=Ggra9493.t1|Name=Ggra9493.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=126bp
MQTHQYAPSTQLAEKQAVANGAATLAADKDAHEDTKAAQATEQAEKQDVK
DALDKESAALAQANAELDEKSTLVEETKATLAAEQRRRPCMKWAELGDER
VKQISFVPSVQSALASKCAASSAPR*
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spliced messenger RNA

>Ggra9493.t1 ID=Ggra9493.t1|Name=Ggra9493.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=378bp|location=Sequence derived from alignment at tig00000873_pilon:178935..179363- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAACGCACCAGTACGCCCCGAGCACTCAGCTCGCCGAGAAGCAGGC
CGTGGCCAATGGCGCCGCCACGCTGGCCGCCGACAAGGACGCGCACGAGG
ACACCAAGGCGGCGCAGGCCACCGAACAGGCCGAGAAGCAGGACGTTAAG
GACGCGCTGGACAAGGAGAGCGCGGCGCTGGCGCAGGCCAACGCGGAACT
GGACGAGAAGAGCACGCTGGTGGAGGAGACCAAGGCGACGCTGGCCGCGG
AGCAGCGGCGGCGCCCGTGCATGAAGTGGGCAGAGCTCGGGGACGAGCGT
GTCAAGCAGATCTCCTTCGTGCCTTCGGTACAATCCGCACTGGCGAGCAA
GTGCGCCGCGTCAAGCGCGCCGCGTTAA
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protein sequence of Ggra9493.t1

>Ggra9493.t1 ID=Ggra9493.t1|Name=Ggra9493.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=126bp
MQTHQYAPSTQLAEKQAVANGAATLAADKDAHEDTKAAQATEQAEKQDVK
DALDKESAALAQANAELDEKSTLVEETKATLAAEQRRRPCMKWAELGDER
VKQISFVPSVQSALASKCAASSAPR*
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mRNA from alignment at tig00000873_pilon:178935..179363-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9493.t1 ID=Ggra9493.t1|Name=Ggra9493.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=429bp|location=Sequence derived from alignment at tig00000873_pilon:178935..179363- (Gracilaria gracilis GNS1m male)
ATGCAAACGCACCAGTGTACTTTCTGAAAAGCACTCTCAACATGACACAA
CTCTTCCTCCTCAGCAGACGCCCCGAGCACTCAGCTCGCCGAGAAGCAGG
CCGTGGCCAATGGCGCCGCCACGCTGGCCGCCGACAAGGACGCGCACGAG
GACACCAAGGCGGCGCAGGCCACCGAACAGGCCGAGAAGCAGGACGTTAA
GGACGCGCTGGACAAGGAGAGCGCGGCGCTGGCGCAGGCCAACGCGGAAC
TGGACGAGAAGAGCACGCTGGTGGAGGAGACCAAGGCGACGCTGGCCGCG
GAGCAGCGGCGGCGCCCGTGCATGAAGTGGGCAGAGCTCGGGGACGAGCG
TGTCAAGCAGATCTCCTTCGTGCCTTCGGTACAATCCGCACTGGCGAGCA
AGTGCGCCGCGTCAAGCGCGCCGCGTTAA
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Coding sequence (CDS) from alignment at tig00000873_pilon:178935..179363-

>Ggra9493.t1 ID=Ggra9493.t1|Name=Ggra9493.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=378bp|location=Sequence derived from alignment at tig00000873_pilon:178935..179363- (Gracilaria gracilis GNS1m male)
ATGCAAACGCACCAGTACGCCCCGAGCACTCAGCTCGCCGAGAAGCAGGC
CGTGGCCAATGGCGCCGCCACGCTGGCCGCCGACAAGGACGCGCACGAGG
ACACCAAGGCGGCGCAGGCCACCGAACAGGCCGAGAAGCAGGACGTTAAG
GACGCGCTGGACAAGGAGAGCGCGGCGCTGGCGCAGGCCAACGCGGAACT
GGACGAGAAGAGCACGCTGGTGGAGGAGACCAAGGCGACGCTGGCCGCGG
AGCAGCGGCGGCGCCCGTGCATGAAGTGGGCAGAGCTCGGGGACGAGCGT
GTCAAGCAGATCTCCTTCGTGCCTTCGGTACAATCCGCACTGGCGAGCAA
GTGCGCCGCGTCAAGCGCGCCGCGTTAA
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