Ggra9489.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9489.t1
Unique NameGgra9489.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length248
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000873_piloncontigtig00000873_pilon:167878..168621 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705840.1
Preferred nameWDR44
PFAMsRibosomal_L37ae,WD40
Max annot lvl2759|Eukaryota
KEGG koko:K02921,ko:K07374,ko:K14566,ko:K20241
KEGG Pathwayko03008,ko03010,ko04145,ko04210,ko04530,ko04540,ko05130,map03008,map03010,map04145,map04210,map04530,map04540,map05130
KEGG ModuleM00177,M00179
GOsGO:0000184,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0005829,GO:0005840,GO:0005856,GO:0005874,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009892,GO:0009987,GO:0010008,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0012505,GO:0015031,GO:0015630,GO:0015833,GO:0015934,GO:0016020,GO:0016070,GO:0016071,GO:0017016,GO:0017137,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0019899,GO:0022625,GO:0022626,GO:0030334,GO:0031090,GO:0031267,GO:0031410,GO:0031982,GO:0031984,GO:0032879,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0040012,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044430,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048471,GO:0048519,GO:0050789,GO:0050794,GO:0051020,GO:0051179,GO:0051234,GO:0051270,GO:0051641,GO:0051649,GO:0060255,GO:0065007,GO:0070180,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097159,GO:0097708,GO:0098588,GO:0098791,GO:0098805,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904,GO:2000145
Evalue8.54e-36
EggNOG OGsCOG1997@1|root,KOG0283@1|root,KOG0283@2759|Eukaryota,KOG0402@2759|Eukaryota
Descriptionstructural constituent of ribosome
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03009,ko03011,ko03019,ko03036,ko04131,ko04147,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9489Ggra9489Gracilaria gracilis GNS1m malegenetig00000873_pilon 167878..168621 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9489.t1.stop1Ggra9489.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000873_pilon 167878..167880 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9489.t1.CDS1Ggra9489.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000873_pilon 167878..168621 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9489.t1.exon1Ggra9489.t1.exon1Gracilaria gracilis GNS1m maleexontig00000873_pilon 167878..168621 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9489.t1.start1Ggra9489.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000873_pilon 168619..168621 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9489.t1Ggra9489.t1Gracilaria gracilis GNS1m malepolypeptidetig00000873_pilon 167878..168621 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9489.t1 ID=Ggra9489.t1|Name=Ggra9489.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=248bp
MANGIVTMWHLKERKVLCKAETDDLITACAITPDGTTALVGTNNGRCKFY
GLFDEIQGEWQFKHTTQLDVRSRRAKNAQGKKICGFRFYGKSDKVIVSSN
DSRLRLYRLDDKSILTKFLGHQNNHSRLTASFAPGGRYVLCGSEGRMVYI
WEVDYSLYRVPQAVGRTMKKPVHEDESSTQQRKDGGGNAYEYFVAQEGGE
LTAAVFAPKMVPERALSVRGALSKSVTSGLVIVTASDDGVLRVFGCC*
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spliced messenger RNA

>Ggra9489.t1 ID=Ggra9489.t1|Name=Ggra9489.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=744bp|location=Sequence derived from alignment at tig00000873_pilon:167878..168621- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGAACGGAATTGTGACCATGTGGCATCTGAAGGAACGCAAGGTGCT
GTGCAAGGCGGAGACGGACGACTTGATCACTGCGTGCGCCATCACGCCGG
ACGGCACCACTGCGCTGGTGGGTACTAACAACGGGCGGTGCAAGTTTTAC
GGGCTGTTTGACGAGATTCAGGGCGAATGGCAGTTTAAACACACCACGCA
GCTGGACGTTCGCTCGCGGCGCGCCAAGAACGCGCAGGGAAAGAAGATTT
GTGGCTTTCGCTTCTACGGAAAGAGCGACAAGGTGATTGTGTCGTCCAAC
GATTCTCGGCTGCGTCTGTACCGACTGGACGACAAGTCGATCCTGACAAA
GTTCTTGGGCCATCAGAACAACCACTCACGACTGACAGCGTCGTTCGCGC
CGGGCGGTCGATACGTGCTGTGCGGGTCGGAGGGCCGAATGGTGTACATC
TGGGAGGTGGACTACTCGCTGTACCGGGTGCCGCAGGCGGTGGGGCGCAC
CATGAAGAAGCCGGTGCATGAGGACGAAAGCAGCACGCAGCAGCGAAAGG
ACGGGGGCGGAAACGCGTACGAATACTTTGTGGCGCAGGAGGGCGGCGAG
CTGACGGCGGCCGTGTTCGCGCCCAAGATGGTGCCGGAACGCGCGCTGAG
CGTACGCGGCGCATTGTCCAAATCGGTCACCAGCGGGCTGGTGATTGTGA
CAGCGAGCGACGATGGCGTACTGCGCGTGTTTGGCTGCTGCTGA
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protein sequence of Ggra9489.t1

>Ggra9489.t1 ID=Ggra9489.t1|Name=Ggra9489.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=248bp
MANGIVTMWHLKERKVLCKAETDDLITACAITPDGTTALVGTNNGRCKFY
GLFDEIQGEWQFKHTTQLDVRSRRAKNAQGKKICGFRFYGKSDKVIVSSN
DSRLRLYRLDDKSILTKFLGHQNNHSRLTASFAPGGRYVLCGSEGRMVYI
WEVDYSLYRVPQAVGRTMKKPVHEDESSTQQRKDGGGNAYEYFVAQEGGE
LTAAVFAPKMVPERALSVRGALSKSVTSGLVIVTASDDGVLRVFGCC*
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mRNA from alignment at tig00000873_pilon:167878..168621-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9489.t1 ID=Ggra9489.t1|Name=Ggra9489.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=744bp|location=Sequence derived from alignment at tig00000873_pilon:167878..168621- (Gracilaria gracilis GNS1m male)
ATGGCGAACGGAATTGTGACCATGTGGCATCTGAAGGAACGCAAGGTGCT
GTGCAAGGCGGAGACGGACGACTTGATCACTGCGTGCGCCATCACGCCGG
ACGGCACCACTGCGCTGGTGGGTACTAACAACGGGCGGTGCAAGTTTTAC
GGGCTGTTTGACGAGATTCAGGGCGAATGGCAGTTTAAACACACCACGCA
GCTGGACGTTCGCTCGCGGCGCGCCAAGAACGCGCAGGGAAAGAAGATTT
GTGGCTTTCGCTTCTACGGAAAGAGCGACAAGGTGATTGTGTCGTCCAAC
GATTCTCGGCTGCGTCTGTACCGACTGGACGACAAGTCGATCCTGACAAA
GTTCTTGGGCCATCAGAACAACCACTCACGACTGACAGCGTCGTTCGCGC
CGGGCGGTCGATACGTGCTGTGCGGGTCGGAGGGCCGAATGGTGTACATC
TGGGAGGTGGACTACTCGCTGTACCGGGTGCCGCAGGCGGTGGGGCGCAC
CATGAAGAAGCCGGTGCATGAGGACGAAAGCAGCACGCAGCAGCGAAAGG
ACGGGGGCGGAAACGCGTACGAATACTTTGTGGCGCAGGAGGGCGGCGAG
CTGACGGCGGCCGTGTTCGCGCCCAAGATGGTGCCGGAACGCGCGCTGAG
CGTACGCGGCGCATTGTCCAAATCGGTCACCAGCGGGCTGGTGATTGTGA
CAGCGAGCGACGATGGCGTACTGCGCGTGTTTGGCTGCTGCTGA
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Coding sequence (CDS) from alignment at tig00000873_pilon:167878..168621-

>Ggra9489.t1 ID=Ggra9489.t1|Name=Ggra9489.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=744bp|location=Sequence derived from alignment at tig00000873_pilon:167878..168621- (Gracilaria gracilis GNS1m male)
ATGGCGAACGGAATTGTGACCATGTGGCATCTGAAGGAACGCAAGGTGCT
GTGCAAGGCGGAGACGGACGACTTGATCACTGCGTGCGCCATCACGCCGG
ACGGCACCACTGCGCTGGTGGGTACTAACAACGGGCGGTGCAAGTTTTAC
GGGCTGTTTGACGAGATTCAGGGCGAATGGCAGTTTAAACACACCACGCA
GCTGGACGTTCGCTCGCGGCGCGCCAAGAACGCGCAGGGAAAGAAGATTT
GTGGCTTTCGCTTCTACGGAAAGAGCGACAAGGTGATTGTGTCGTCCAAC
GATTCTCGGCTGCGTCTGTACCGACTGGACGACAAGTCGATCCTGACAAA
GTTCTTGGGCCATCAGAACAACCACTCACGACTGACAGCGTCGTTCGCGC
CGGGCGGTCGATACGTGCTGTGCGGGTCGGAGGGCCGAATGGTGTACATC
TGGGAGGTGGACTACTCGCTGTACCGGGTGCCGCAGGCGGTGGGGCGCAC
CATGAAGAAGCCGGTGCATGAGGACGAAAGCAGCACGCAGCAGCGAAAGG
ACGGGGGCGGAAACGCGTACGAATACTTTGTGGCGCAGGAGGGCGGCGAG
CTGACGGCGGCCGTGTTCGCGCCCAAGATGGTGCCGGAACGCGCGCTGAG
CGTACGCGGCGCATTGTCCAAATCGGTCACCAGCGGGCTGGTGATTGTGA
CAGCGAGCGACGATGGCGTACTGCGCGTGTTTGGCTGCTGCTGA
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