Ggra9488.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9488.t1
Unique NameGgra9488.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length475
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000873_piloncontigtig00000873_pilon:166056..167480 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706520.1
PFAMsRCC1
Max annot lvl2759|Eukaryota
KEGG koko:K10594
KEGG Pathwayko04120,map04120
Evalue1.11e-96
EggNOG OGsCOG5184@1|root,KOG1426@2759|Eukaryota
EC2.3.2.26
Descriptionguanyl-nucleotide exchange factor activity
COG categoryDZ
BRITEko00000,ko00001,ko01000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9488Ggra9488Gracilaria gracilis GNS1m malegenetig00000873_pilon 166056..167480 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9488.t1.stop1Ggra9488.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000873_pilon 166056..166058 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9488.t1.CDS1Ggra9488.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000873_pilon 166056..167480 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9488.t1.exon1Ggra9488.t1.exon1Gracilaria gracilis GNS1m maleexontig00000873_pilon 166056..167480 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9488.t1.start1Ggra9488.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000873_pilon 167478..167480 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9488.t1Ggra9488.t1Gracilaria gracilis GNS1m malepolypeptidetig00000873_pilon 166056..167480 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9488.t1 ID=Ggra9488.t1|Name=Ggra9488.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=475bp
MAAAESTVWTWGRAKNYRLGRAFVGTDARIPEKVSGFEGVSVRQAACGGG
HTAVVLADNRLFVFGYSQYGQLGLGDRIDMCDATQVFLIPPASIKKDDEG
TASKDGASSSLPVADVYCGRYHTIARTTSGFVFTWGGGKNGRLGHGDEKI
RAQPTCVERLISHNAVAITAGYHNNLVLTEDGEVWSWGWGAHGQLGLGDS
KDRDVPTIIPELSHESVCYLSCGDRHSFAITNDGRVFGWGSNEFGQLGCG
NKGDTVLRPKLIEGLQGLVVVAISSGDRHSAAVTNTGAVYTWGCGSDGQC
GHCDFRDVVRPKLVEALVEQFVVDVKCGHNFTMVMNSEHQVFAWGNNTYG
QLGNNGNGKSEAPVKVIINSTARVSRVSCAHFHCIMWMQVAEETSCSSRA
MLCARRLSNASCVESSKEGDTVEEWRRQEEEARAQLAAVLETYSGKQRAC
RSTIEALRTNDKMEHEEISAALPF*
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spliced messenger RNA

>Ggra9488.t1 ID=Ggra9488.t1|Name=Ggra9488.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1425bp|location=Sequence derived from alignment at tig00000873_pilon:166056..167480- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCCGCGGAAAGCACCGTGTGGACGTGGGGTCGAGCCAAGAACTA
CCGCTTGGGGCGCGCGTTTGTCGGCACCGACGCGCGCATCCCCGAGAAGG
TGTCCGGCTTTGAGGGCGTGTCCGTGCGCCAGGCCGCGTGTGGAGGCGGT
CACACCGCCGTCGTGCTCGCTGACAACCGCCTGTTCGTGTTCGGCTACAG
CCAGTACGGCCAGCTCGGGCTGGGCGATCGTATCGATATGTGCGATGCTA
CACAGGTGTTTCTGATACCTCCCGCTAGCATCAAGAAGGACGACGAGGGC
ACAGCGTCCAAGGACGGCGCTAGCTCGTCGCTTCCTGTGGCCGATGTGTA
TTGTGGACGCTACCATACCATTGCGCGCACCACCAGCGGCTTTGTGTTCA
CCTGGGGCGGTGGCAAGAACGGGCGCTTGGGCCATGGCGATGAGAAGATT
CGCGCGCAGCCGACGTGCGTGGAGAGGCTCATCTCTCACAACGCGGTGGC
CATCACTGCGGGCTATCACAACAACCTGGTGCTGACGGAGGACGGCGAGG
TGTGGTCGTGGGGGTGGGGCGCGCATGGTCAGCTGGGGCTCGGTGATAGC
AAGGACCGTGACGTGCCGACCATCATCCCAGAGCTGTCGCACGAGAGCGT
GTGCTACCTGTCGTGCGGCGATCGGCACTCGTTCGCCATCACCAACGACG
GGCGCGTCTTTGGCTGGGGCTCCAACGAATTTGGGCAGCTGGGGTGCGGC
AACAAGGGCGACACCGTTCTGAGACCCAAGCTGATTGAGGGCCTGCAGGG
GTTGGTGGTAGTGGCGATTTCCAGCGGCGATCGACATTCGGCGGCTGTGA
CCAACACTGGCGCGGTGTATACGTGGGGGTGCGGGTCGGACGGACAGTGC
GGTCACTGCGATTTTCGCGACGTGGTGCGACCCAAGCTGGTGGAGGCGCT
GGTGGAGCAGTTTGTGGTGGACGTGAAATGCGGACATAACTTTACCATGG
TGATGAACTCGGAGCACCAAGTGTTTGCGTGGGGCAACAACACGTACGGG
CAGCTGGGAAACAATGGAAACGGCAAGAGCGAGGCGCCGGTGAAGGTGAT
CATCAACTCTACGGCGCGTGTGAGCCGTGTGTCGTGCGCTCACTTTCACT
GCATCATGTGGATGCAGGTGGCGGAGGAGACGTCGTGCAGCTCGCGCGCC
ATGCTGTGCGCCAGACGGTTGAGCAACGCGTCGTGTGTGGAGAGCAGCAA
GGAGGGCGACACGGTGGAGGAATGGCGGCGACAGGAGGAGGAGGCCCGCG
CGCAGCTGGCGGCTGTACTTGAAACGTACAGCGGGAAGCAACGGGCGTGC
CGGAGCACGATCGAGGCGCTGCGCACAAACGACAAGATGGAGCACGAAGA
AATCAGCGCGGCGCTGCCGTTCTAG
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protein sequence of Ggra9488.t1

>Ggra9488.t1 ID=Ggra9488.t1|Name=Ggra9488.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=475bp
MAAAESTVWTWGRAKNYRLGRAFVGTDARIPEKVSGFEGVSVRQAACGGG
HTAVVLADNRLFVFGYSQYGQLGLGDRIDMCDATQVFLIPPASIKKDDEG
TASKDGASSSLPVADVYCGRYHTIARTTSGFVFTWGGGKNGRLGHGDEKI
RAQPTCVERLISHNAVAITAGYHNNLVLTEDGEVWSWGWGAHGQLGLGDS
KDRDVPTIIPELSHESVCYLSCGDRHSFAITNDGRVFGWGSNEFGQLGCG
NKGDTVLRPKLIEGLQGLVVVAISSGDRHSAAVTNTGAVYTWGCGSDGQC
GHCDFRDVVRPKLVEALVEQFVVDVKCGHNFTMVMNSEHQVFAWGNNTYG
QLGNNGNGKSEAPVKVIINSTARVSRVSCAHFHCIMWMQVAEETSCSSRA
MLCARRLSNASCVESSKEGDTVEEWRRQEEEARAQLAAVLETYSGKQRAC
RSTIEALRTNDKMEHEEISAALPF*
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mRNA from alignment at tig00000873_pilon:166056..167480-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9488.t1 ID=Ggra9488.t1|Name=Ggra9488.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1425bp|location=Sequence derived from alignment at tig00000873_pilon:166056..167480- (Gracilaria gracilis GNS1m male)
ATGGCCGCCGCGGAAAGCACCGTGTGGACGTGGGGTCGAGCCAAGAACTA
CCGCTTGGGGCGCGCGTTTGTCGGCACCGACGCGCGCATCCCCGAGAAGG
TGTCCGGCTTTGAGGGCGTGTCCGTGCGCCAGGCCGCGTGTGGAGGCGGT
CACACCGCCGTCGTGCTCGCTGACAACCGCCTGTTCGTGTTCGGCTACAG
CCAGTACGGCCAGCTCGGGCTGGGCGATCGTATCGATATGTGCGATGCTA
CACAGGTGTTTCTGATACCTCCCGCTAGCATCAAGAAGGACGACGAGGGC
ACAGCGTCCAAGGACGGCGCTAGCTCGTCGCTTCCTGTGGCCGATGTGTA
TTGTGGACGCTACCATACCATTGCGCGCACCACCAGCGGCTTTGTGTTCA
CCTGGGGCGGTGGCAAGAACGGGCGCTTGGGCCATGGCGATGAGAAGATT
CGCGCGCAGCCGACGTGCGTGGAGAGGCTCATCTCTCACAACGCGGTGGC
CATCACTGCGGGCTATCACAACAACCTGGTGCTGACGGAGGACGGCGAGG
TGTGGTCGTGGGGGTGGGGCGCGCATGGTCAGCTGGGGCTCGGTGATAGC
AAGGACCGTGACGTGCCGACCATCATCCCAGAGCTGTCGCACGAGAGCGT
GTGCTACCTGTCGTGCGGCGATCGGCACTCGTTCGCCATCACCAACGACG
GGCGCGTCTTTGGCTGGGGCTCCAACGAATTTGGGCAGCTGGGGTGCGGC
AACAAGGGCGACACCGTTCTGAGACCCAAGCTGATTGAGGGCCTGCAGGG
GTTGGTGGTAGTGGCGATTTCCAGCGGCGATCGACATTCGGCGGCTGTGA
CCAACACTGGCGCGGTGTATACGTGGGGGTGCGGGTCGGACGGACAGTGC
GGTCACTGCGATTTTCGCGACGTGGTGCGACCCAAGCTGGTGGAGGCGCT
GGTGGAGCAGTTTGTGGTGGACGTGAAATGCGGACATAACTTTACCATGG
TGATGAACTCGGAGCACCAAGTGTTTGCGTGGGGCAACAACACGTACGGG
CAGCTGGGAAACAATGGAAACGGCAAGAGCGAGGCGCCGGTGAAGGTGAT
CATCAACTCTACGGCGCGTGTGAGCCGTGTGTCGTGCGCTCACTTTCACT
GCATCATGTGGATGCAGGTGGCGGAGGAGACGTCGTGCAGCTCGCGCGCC
ATGCTGTGCGCCAGACGGTTGAGCAACGCGTCGTGTGTGGAGAGCAGCAA
GGAGGGCGACACGGTGGAGGAATGGCGGCGACAGGAGGAGGAGGCCCGCG
CGCAGCTGGCGGCTGTACTTGAAACGTACAGCGGGAAGCAACGGGCGTGC
CGGAGCACGATCGAGGCGCTGCGCACAAACGACAAGATGGAGCACGAAGA
AATCAGCGCGGCGCTGCCGTTCTAG
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Coding sequence (CDS) from alignment at tig00000873_pilon:166056..167480-

>Ggra9488.t1 ID=Ggra9488.t1|Name=Ggra9488.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1425bp|location=Sequence derived from alignment at tig00000873_pilon:166056..167480- (Gracilaria gracilis GNS1m male)
ATGGCCGCCGCGGAAAGCACCGTGTGGACGTGGGGTCGAGCCAAGAACTA
CCGCTTGGGGCGCGCGTTTGTCGGCACCGACGCGCGCATCCCCGAGAAGG
TGTCCGGCTTTGAGGGCGTGTCCGTGCGCCAGGCCGCGTGTGGAGGCGGT
CACACCGCCGTCGTGCTCGCTGACAACCGCCTGTTCGTGTTCGGCTACAG
CCAGTACGGCCAGCTCGGGCTGGGCGATCGTATCGATATGTGCGATGCTA
CACAGGTGTTTCTGATACCTCCCGCTAGCATCAAGAAGGACGACGAGGGC
ACAGCGTCCAAGGACGGCGCTAGCTCGTCGCTTCCTGTGGCCGATGTGTA
TTGTGGACGCTACCATACCATTGCGCGCACCACCAGCGGCTTTGTGTTCA
CCTGGGGCGGTGGCAAGAACGGGCGCTTGGGCCATGGCGATGAGAAGATT
CGCGCGCAGCCGACGTGCGTGGAGAGGCTCATCTCTCACAACGCGGTGGC
CATCACTGCGGGCTATCACAACAACCTGGTGCTGACGGAGGACGGCGAGG
TGTGGTCGTGGGGGTGGGGCGCGCATGGTCAGCTGGGGCTCGGTGATAGC
AAGGACCGTGACGTGCCGACCATCATCCCAGAGCTGTCGCACGAGAGCGT
GTGCTACCTGTCGTGCGGCGATCGGCACTCGTTCGCCATCACCAACGACG
GGCGCGTCTTTGGCTGGGGCTCCAACGAATTTGGGCAGCTGGGGTGCGGC
AACAAGGGCGACACCGTTCTGAGACCCAAGCTGATTGAGGGCCTGCAGGG
GTTGGTGGTAGTGGCGATTTCCAGCGGCGATCGACATTCGGCGGCTGTGA
CCAACACTGGCGCGGTGTATACGTGGGGGTGCGGGTCGGACGGACAGTGC
GGTCACTGCGATTTTCGCGACGTGGTGCGACCCAAGCTGGTGGAGGCGCT
GGTGGAGCAGTTTGTGGTGGACGTGAAATGCGGACATAACTTTACCATGG
TGATGAACTCGGAGCACCAAGTGTTTGCGTGGGGCAACAACACGTACGGG
CAGCTGGGAAACAATGGAAACGGCAAGAGCGAGGCGCCGGTGAAGGTGAT
CATCAACTCTACGGCGCGTGTGAGCCGTGTGTCGTGCGCTCACTTTCACT
GCATCATGTGGATGCAGGTGGCGGAGGAGACGTCGTGCAGCTCGCGCGCC
ATGCTGTGCGCCAGACGGTTGAGCAACGCGTCGTGTGTGGAGAGCAGCAA
GGAGGGCGACACGGTGGAGGAATGGCGGCGACAGGAGGAGGAGGCCCGCG
CGCAGCTGGCGGCTGTACTTGAAACGTACAGCGGGAAGCAACGGGCGTGC
CGGAGCACGATCGAGGCGCTGCGCACAAACGACAAGATGGAGCACGAAGA
AATCAGCGCGGCGCTGCCGTTCTAG
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