Ggra9479.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9479.t1
Unique NameGgra9479.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length242
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000873_piloncontigtig00000873_pilon:20991..21716 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9479Ggra9479Gracilaria gracilis GNS1m malegenetig00000873_pilon 20991..21716 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9479.t1.stop1Ggra9479.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000873_pilon 20991..20993 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9479.t1.CDS1Ggra9479.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000873_pilon 20991..21716 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9479.t1.exon1Ggra9479.t1.exon1Gracilaria gracilis GNS1m maleexontig00000873_pilon 20991..21716 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9479.t1.start1Ggra9479.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000873_pilon 21714..21716 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9479.t1Ggra9479.t1Gracilaria gracilis GNS1m malepolypeptidetig00000873_pilon 20991..21716 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9479.t1 ID=Ggra9479.t1|Name=Ggra9479.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=242bp
MSTQYTELENNAERIAEVRTWMKKQCSRKYPWLNFTCDERYLENDLKPRP
EIRAEIWALYRMEGNPGTPNIILQHAVAEFLMLEKGMTPAEFTALKRCAT
NKKMREKGDYPKRPDILSFCLPKVPGGMSPQAASARVVTSLQNGHKGTQK
LLIEPCYSRESLQSRRLIVVRSEVTPKYPVPWNVEDDIIDLMDDESSIEE
EKMSLSEKPRVQGIKRIRGEDSITGYTVRQGDDSSFNEYSG*
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spliced messenger RNA

>Ggra9479.t1 ID=Ggra9479.t1|Name=Ggra9479.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=726bp|location=Sequence derived from alignment at tig00000873_pilon:20991..21716- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTACGCAGTATACAGAACTTGAAAACAACGCCGAACGAATTGCCGA
AGTTAGGACATGGATGAAGAAACAGTGTTCACGAAAATACCCATGGCTCA
ATTTCACATGTGATGAAAGGTATCTAGAGAACGACCTCAAACCACGTCCT
GAGATACGAGCTGAGATATGGGCGTTATATAGAATGGAAGGAAATCCGGG
TACACCGAACATAATTCTTCAGCATGCTGTTGCTGAATTCCTCATGCTCG
AAAAAGGGATGACCCCCGCGGAGTTCACTGCTCTCAAACGATGCGCCACA
AACAAGAAGATGAGAGAGAAGGGCGACTATCCAAAAAGACCAGACATTTT
GAGCTTTTGCCTGCCGAAGGTACCTGGCGGAATGTCGCCGCAGGCAGCAT
CCGCCAGAGTTGTGACCTCTCTGCAAAATGGGCATAAGGGGACTCAAAAA
CTGCTCATAGAACCCTGTTACTCTAGGGAAAGTCTACAATCTCGTAGGCT
TATAGTGGTTAGATCCGAAGTGACACCAAAATATCCAGTACCCTGGAACG
TCGAAGACGACATTATTGACTTGATGGACGACGAAAGCTCAATTGAAGAA
GAGAAAATGTCTCTATCGGAGAAGCCAAGAGTTCAAGGAATCAAGAGAAT
TCGAGGGGAAGACTCGATAACTGGATACACTGTGAGACAAGGAGATGATA
GTTCATTTAATGAATACAGCGGATAA
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protein sequence of Ggra9479.t1

>Ggra9479.t1 ID=Ggra9479.t1|Name=Ggra9479.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=242bp
MSTQYTELENNAERIAEVRTWMKKQCSRKYPWLNFTCDERYLENDLKPRP
EIRAEIWALYRMEGNPGTPNIILQHAVAEFLMLEKGMTPAEFTALKRCAT
NKKMREKGDYPKRPDILSFCLPKVPGGMSPQAASARVVTSLQNGHKGTQK
LLIEPCYSRESLQSRRLIVVRSEVTPKYPVPWNVEDDIIDLMDDESSIEE
EKMSLSEKPRVQGIKRIRGEDSITGYTVRQGDDSSFNEYSG*
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mRNA from alignment at tig00000873_pilon:20991..21716-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9479.t1 ID=Ggra9479.t1|Name=Ggra9479.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=726bp|location=Sequence derived from alignment at tig00000873_pilon:20991..21716- (Gracilaria gracilis GNS1m male)
ATGTCTACGCAGTATACAGAACTTGAAAACAACGCCGAACGAATTGCCGA
AGTTAGGACATGGATGAAGAAACAGTGTTCACGAAAATACCCATGGCTCA
ATTTCACATGTGATGAAAGGTATCTAGAGAACGACCTCAAACCACGTCCT
GAGATACGAGCTGAGATATGGGCGTTATATAGAATGGAAGGAAATCCGGG
TACACCGAACATAATTCTTCAGCATGCTGTTGCTGAATTCCTCATGCTCG
AAAAAGGGATGACCCCCGCGGAGTTCACTGCTCTCAAACGATGCGCCACA
AACAAGAAGATGAGAGAGAAGGGCGACTATCCAAAAAGACCAGACATTTT
GAGCTTTTGCCTGCCGAAGGTACCTGGCGGAATGTCGCCGCAGGCAGCAT
CCGCCAGAGTTGTGACCTCTCTGCAAAATGGGCATAAGGGGACTCAAAAA
CTGCTCATAGAACCCTGTTACTCTAGGGAAAGTCTACAATCTCGTAGGCT
TATAGTGGTTAGATCCGAAGTGACACCAAAATATCCAGTACCCTGGAACG
TCGAAGACGACATTATTGACTTGATGGACGACGAAAGCTCAATTGAAGAA
GAGAAAATGTCTCTATCGGAGAAGCCAAGAGTTCAAGGAATCAAGAGAAT
TCGAGGGGAAGACTCGATAACTGGATACACTGTGAGACAAGGAGATGATA
GTTCATTTAATGAATACAGCGGATAA
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Coding sequence (CDS) from alignment at tig00000873_pilon:20991..21716-

>Ggra9479.t1 ID=Ggra9479.t1|Name=Ggra9479.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=726bp|location=Sequence derived from alignment at tig00000873_pilon:20991..21716- (Gracilaria gracilis GNS1m male)
ATGTCTACGCAGTATACAGAACTTGAAAACAACGCCGAACGAATTGCCGA
AGTTAGGACATGGATGAAGAAACAGTGTTCACGAAAATACCCATGGCTCA
ATTTCACATGTGATGAAAGGTATCTAGAGAACGACCTCAAACCACGTCCT
GAGATACGAGCTGAGATATGGGCGTTATATAGAATGGAAGGAAATCCGGG
TACACCGAACATAATTCTTCAGCATGCTGTTGCTGAATTCCTCATGCTCG
AAAAAGGGATGACCCCCGCGGAGTTCACTGCTCTCAAACGATGCGCCACA
AACAAGAAGATGAGAGAGAAGGGCGACTATCCAAAAAGACCAGACATTTT
GAGCTTTTGCCTGCCGAAGGTACCTGGCGGAATGTCGCCGCAGGCAGCAT
CCGCCAGAGTTGTGACCTCTCTGCAAAATGGGCATAAGGGGACTCAAAAA
CTGCTCATAGAACCCTGTTACTCTAGGGAAAGTCTACAATCTCGTAGGCT
TATAGTGGTTAGATCCGAAGTGACACCAAAATATCCAGTACCCTGGAACG
TCGAAGACGACATTATTGACTTGATGGACGACGAAAGCTCAATTGAAGAA
GAGAAAATGTCTCTATCGGAGAAGCCAAGAGTTCAAGGAATCAAGAGAAT
TCGAGGGGAAGACTCGATAACTGGATACACTGTGAGACAAGGAGATGATA
GTTCATTTAATGAATACAGCGGATAA
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