Ggra945.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra945.t1
Unique NameGgra945.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length219
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000049_piloncontigtig00000049_pilon:898139..898795 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra945Ggra945Gracilaria gracilis GNS1m malegenetig00000049_pilon 898139..898795 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra945.t1.start1Ggra945.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000049_pilon 898139..898141 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra945.t1.CDS1Ggra945.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000049_pilon 898139..898795 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra945.t1.exon1Ggra945.t1.exon1Gracilaria gracilis GNS1m maleexontig00000049_pilon 898139..898795 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra945.t1.stop1Ggra945.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000049_pilon 898793..898795 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra945.t1Ggra945.t1Gracilaria gracilis GNS1m malepolypeptidetig00000049_pilon 898139..898795 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra945.t1 ID=Ggra945.t1|Name=Ggra945.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=219bp
MAFLSALLIFFLMLSSCSGSPSAASQEEHNCFKLIPTLPQPTPRNNSLTS
LEEVLLLSCIKARPNKTITVYEAQTSLELDQTKCSAKPAFSYVNGEVVTI
IIEEIDSVLECNEGFCVIVAHNASTLLFSTPQQPTFDITSNTNVTAFSTQ
LPFDPSPFLSTYAQILLNLFVGGVFDELAIRRILFLQIVESTCMFRRSTV
VAGPFETPCGQMEIRYRS*
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spliced messenger RNA

>Ggra945.t1 ID=Ggra945.t1|Name=Ggra945.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=657bp|location=Sequence derived from alignment at tig00000049_pilon:898139..898795+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTTCCTATCCGCACTACTCATTTTCTTTCTCATGCTGTCATCTTG
TAGTGGCTCTCCTTCCGCCGCATCTCAAGAGGAGCATAACTGCTTCAAGC
TAATTCCAACTCTACCACAACCCACCCCAAGAAACAACTCGCTCACAAGT
TTAGAAGAAGTATTGTTGTTGAGCTGTATAAAAGCACGCCCCAACAAGAC
CATTACCGTCTACGAAGCTCAAACTAGTCTGGAACTAGATCAAACAAAAT
GCAGCGCCAAACCCGCGTTCAGCTATGTCAATGGAGAGGTCGTGACCATA
ATCATAGAAGAGATAGACTCCGTGCTAGAATGCAATGAAGGCTTTTGCGT
CATCGTCGCGCATAATGCATCCACGCTGCTTTTCTCCACTCCCCAGCAAC
CGACTTTTGATATCACTTCCAATACCAATGTCACCGCCTTTAGCACGCAA
CTCCCATTCGATCCCTCACCTTTTCTTTCCACATACGCTCAAATCCTGCT
CAACTTGTTTGTCGGTGGTGTATTTGACGAATTGGCCATTCGCCGCATTC
TATTTCTGCAGATTGTCGAAAGCACCTGCATGTTTAGGAGAAGCACCGTC
GTTGCGGGCCCTTTCGAAACGCCGTGTGGACAAATGGAAATACGGTATCG
TTCGTAA
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protein sequence of Ggra945.t1

>Ggra945.t1 ID=Ggra945.t1|Name=Ggra945.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=219bp
MAFLSALLIFFLMLSSCSGSPSAASQEEHNCFKLIPTLPQPTPRNNSLTS
LEEVLLLSCIKARPNKTITVYEAQTSLELDQTKCSAKPAFSYVNGEVVTI
IIEEIDSVLECNEGFCVIVAHNASTLLFSTPQQPTFDITSNTNVTAFSTQ
LPFDPSPFLSTYAQILLNLFVGGVFDELAIRRILFLQIVESTCMFRRSTV
VAGPFETPCGQMEIRYRS*
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mRNA from alignment at tig00000049_pilon:898139..898795+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra945.t1 ID=Ggra945.t1|Name=Ggra945.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=657bp|location=Sequence derived from alignment at tig00000049_pilon:898139..898795+ (Gracilaria gracilis GNS1m male)
ATGGCCTTCCTATCCGCACTACTCATTTTCTTTCTCATGCTGTCATCTTG
TAGTGGCTCTCCTTCCGCCGCATCTCAAGAGGAGCATAACTGCTTCAAGC
TAATTCCAACTCTACCACAACCCACCCCAAGAAACAACTCGCTCACAAGT
TTAGAAGAAGTATTGTTGTTGAGCTGTATAAAAGCACGCCCCAACAAGAC
CATTACCGTCTACGAAGCTCAAACTAGTCTGGAACTAGATCAAACAAAAT
GCAGCGCCAAACCCGCGTTCAGCTATGTCAATGGAGAGGTCGTGACCATA
ATCATAGAAGAGATAGACTCCGTGCTAGAATGCAATGAAGGCTTTTGCGT
CATCGTCGCGCATAATGCATCCACGCTGCTTTTCTCCACTCCCCAGCAAC
CGACTTTTGATATCACTTCCAATACCAATGTCACCGCCTTTAGCACGCAA
CTCCCATTCGATCCCTCACCTTTTCTTTCCACATACGCTCAAATCCTGCT
CAACTTGTTTGTCGGTGGTGTATTTGACGAATTGGCCATTCGCCGCATTC
TATTTCTGCAGATTGTCGAAAGCACCTGCATGTTTAGGAGAAGCACCGTC
GTTGCGGGCCCTTTCGAAACGCCGTGTGGACAAATGGAAATACGGTATCG
TTCGTAA
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Coding sequence (CDS) from alignment at tig00000049_pilon:898139..898795+

>Ggra945.t1 ID=Ggra945.t1|Name=Ggra945.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=657bp|location=Sequence derived from alignment at tig00000049_pilon:898139..898795+ (Gracilaria gracilis GNS1m male)
ATGGCCTTCCTATCCGCACTACTCATTTTCTTTCTCATGCTGTCATCTTG
TAGTGGCTCTCCTTCCGCCGCATCTCAAGAGGAGCATAACTGCTTCAAGC
TAATTCCAACTCTACCACAACCCACCCCAAGAAACAACTCGCTCACAAGT
TTAGAAGAAGTATTGTTGTTGAGCTGTATAAAAGCACGCCCCAACAAGAC
CATTACCGTCTACGAAGCTCAAACTAGTCTGGAACTAGATCAAACAAAAT
GCAGCGCCAAACCCGCGTTCAGCTATGTCAATGGAGAGGTCGTGACCATA
ATCATAGAAGAGATAGACTCCGTGCTAGAATGCAATGAAGGCTTTTGCGT
CATCGTCGCGCATAATGCATCCACGCTGCTTTTCTCCACTCCCCAGCAAC
CGACTTTTGATATCACTTCCAATACCAATGTCACCGCCTTTAGCACGCAA
CTCCCATTCGATCCCTCACCTTTTCTTTCCACATACGCTCAAATCCTGCT
CAACTTGTTTGTCGGTGGTGTATTTGACGAATTGGCCATTCGCCGCATTC
TATTTCTGCAGATTGTCGAAAGCACCTGCATGTTTAGGAGAAGCACCGTC
GTTGCGGGCCCTTTCGAAACGCCGTGTGGACAAATGGAAATACGGTATCG
TTCGTAA
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