Ggra9406.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9406.t1
Unique NameGgra9406.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length563
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000883_piloncontigtig00000883_pilon:457297..458985 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMR121CT
PFAMsIlvC,IlvN
Max annot lvl2759|Eukaryota
KEGG rclassRC00726,RC00836,RC00837,RC01726
KEGG koko:K00053
KEGG ReactionR03051,R04439,R04440,R05068,R05069,R05071
KEGG Pathwayko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00770,map01100,map01110,map01130,map01210,map01230
KEGG ModuleM00019,M00570
GOsGO:0000166,GO:0000287,GO:0003674,GO:0005488,GO:0005507,GO:0005515,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0008150,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0010035,GO:0010038,GO:0030312,GO:0031967,GO:0031975,GO:0036094,GO:0042221,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046686,GO:0046872,GO:0046914,GO:0046983,GO:0048037,GO:0048046,GO:0050661,GO:0050662,GO:0050896,GO:0070402,GO:0071944,GO:0097159,GO:1901265,GO:1901363
Evalue1.34e-247
EggNOG OGsCOG0059@1|root,2QQBF@2759|Eukaryota
EC1.1.1.86
Descriptionketol-acid reductoisomerase activity
COG categoryEH
BiGG ReactioniRC1080.CRv4_Au5_s10_g343_t1
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9406Ggra9406Gracilaria gracilis GNS1m malegenetig00000883_pilon 457297..458985 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9406.t1.stop1Ggra9406.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000883_pilon 457297..457299 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9406.t1.CDS1Ggra9406.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000883_pilon 457297..458985 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9406.t1.exon1Ggra9406.t1.exon1Gracilaria gracilis GNS1m maleexontig00000883_pilon 457297..458985 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9406.t1.start1Ggra9406.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000883_pilon 458983..458985 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9406.t1Ggra9406.t1Gracilaria gracilis GNS1m malepolypeptidetig00000883_pilon 457297..458985 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9406.t1 ID=Ggra9406.t1|Name=Ggra9406.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=563bp
MFAFTPSVWLGASVTSKPHVASRLASIRPHAARTSRSRLRPVTMGIPSVV
EERAKAADFDTKCFTKERITLADTVEYIVRGGRDVFSSLPAAFSSVKQVG
VIGWGSQGPAQAQNLRDSFSDAGVDAKVVVGLRSGSSSMAQARNAGFTEE
SGTLGEMYKVISESDLVILLISDAATANCYKQVFAAMKPGATLGLSHGFL
LGHMDSIGETFPDDISVILVAPKGMGPSVRRLYVQGKTENGAGINCSFAV
ERDVDGKATDLAIGWAVAIGAPFSFQTTLRNEYRSDIFGERCILLGAIHG
VCESLWRRFVLDQGMDEEEAFLRSTECITGPVSKVISKRGIKAVYTDMNE
ADRAIFAKAYCAAYEPAYEIVVECYEDVECGNEIRSVIAAGNRAKRFPVI
SPIDGTRMWKVGEVVRGKRSERTEEIIDPFSAGVYCATMMAQIDVLLEKG
HVLSEIINESVIECVDSLSPYMHARGVAYMVFNCSFTAATGSKKWAPRFD
YNLSQRAYTAIDNDDALNMTHLDDFLNHEIHPAVVECAKLRPSVDISLTG
TGSDDAARASLS*
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spliced messenger RNA

>Ggra9406.t1 ID=Ggra9406.t1|Name=Ggra9406.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1689bp|location=Sequence derived from alignment at tig00000883_pilon:457297..458985- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCGCCTTCACCCCATCCGTCTGGCTCGGCGCCTCCGTCACTTCAAA
ACCGCACGTCGCGTCGCGACTCGCGTCGATCCGTCCTCATGCCGCGCGCA
CCTCGCGGAGTCGCTTGCGCCCGGTCACCATGGGCATACCGTCCGTCGTG
GAAGAACGTGCAAAGGCCGCTGACTTTGACACCAAATGCTTCACCAAGGA
ACGTATCACGCTTGCTGATACCGTGGAATACATTGTTCGAGGCGGACGCG
ACGTGTTCTCGAGTCTTCCCGCTGCGTTTTCGTCTGTGAAACAGGTTGGT
GTCATTGGTTGGGGAAGTCAAGGTCCGGCGCAGGCTCAGAATTTGAGGGA
TTCTTTCAGTGATGCTGGCGTTGATGCTAAGGTTGTTGTTGGGCTTCGAA
GTGGATCGTCTTCTATGGCTCAGGCCAGGAATGCTGGCTTCACTGAGGAG
AGCGGAACGCTTGGCGAAATGTACAAGGTCATTTCTGAGAGCGATCTTGT
CATTCTTCTGATTTCTGATGCTGCAACTGCAAACTGCTACAAGCAGGTGT
TCGCCGCCATGAAGCCCGGTGCTACTCTTGGTCTGTCGCATGGGTTCCTT
CTTGGCCATATGGATTCTATTGGTGAGACGTTCCCGGATGATATTAGTGT
CATTCTTGTGGCCCCGAAGGGCATGGGTCCATCGGTTAGAAGACTCTATG
TCCAAGGAAAGACTGAGAACGGTGCCGGTATAAACTGCTCTTTCGCAGTT
GAGAGAGATGTGGACGGCAAAGCAACTGATCTCGCCATTGGATGGGCTGT
GGCCATTGGGGCTCCGTTCAGTTTCCAGACTACTCTTAGAAACGAATACC
GTTCCGATATTTTTGGTGAACGCTGCATCCTGCTGGGAGCTATCCATGGC
GTGTGTGAAAGTTTGTGGAGGCGGTTTGTGCTGGATCAGGGAATGGATGA
GGAAGAGGCTTTCCTGCGTTCCACGGAGTGTATCACGGGGCCTGTGTCGA
AGGTGATATCCAAGAGAGGTATCAAGGCTGTATACACCGATATGAACGAA
GCAGATCGCGCAATCTTTGCCAAAGCCTACTGTGCGGCATATGAGCCTGC
CTATGAAATTGTTGTGGAGTGTTATGAAGATGTTGAATGTGGAAATGAGA
TCCGATCCGTGATCGCTGCAGGAAACCGTGCCAAGAGGTTCCCTGTTATC
TCACCTATTGATGGTACCCGAATGTGGAAGGTCGGTGAAGTTGTCCGTGG
CAAACGCTCTGAGAGAACTGAAGAGATTATTGACCCGTTCTCTGCTGGAG
TGTATTGTGCCACAATGATGGCACAGATTGATGTGCTACTGGAGAAGGGT
CACGTACTATCGGAGATCATCAATGAGTCGGTCATTGAATGCGTCGACAG
TCTTTCACCGTATATGCATGCTAGAGGTGTCGCGTACATGGTCTTCAACT
GCTCGTTTACTGCTGCTACCGGCAGCAAGAAGTGGGCTCCGAGATTTGAC
TACAACCTTTCGCAGAGAGCTTATACTGCCATCGACAACGATGATGCGCT
CAATATGACGCATTTGGATGATTTCCTTAATCACGAGATTCATCCTGCTG
TGGTCGAGTGTGCCAAGCTGCGCCCCTCAGTCGATATCTCGCTCACGGGA
ACTGGCTCAGACGATGCTGCCCGAGCGAGTCTTTCGTAA
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protein sequence of Ggra9406.t1

>Ggra9406.t1 ID=Ggra9406.t1|Name=Ggra9406.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=563bp
MFAFTPSVWLGASVTSKPHVASRLASIRPHAARTSRSRLRPVTMGIPSVV
EERAKAADFDTKCFTKERITLADTVEYIVRGGRDVFSSLPAAFSSVKQVG
VIGWGSQGPAQAQNLRDSFSDAGVDAKVVVGLRSGSSSMAQARNAGFTEE
SGTLGEMYKVISESDLVILLISDAATANCYKQVFAAMKPGATLGLSHGFL
LGHMDSIGETFPDDISVILVAPKGMGPSVRRLYVQGKTENGAGINCSFAV
ERDVDGKATDLAIGWAVAIGAPFSFQTTLRNEYRSDIFGERCILLGAIHG
VCESLWRRFVLDQGMDEEEAFLRSTECITGPVSKVISKRGIKAVYTDMNE
ADRAIFAKAYCAAYEPAYEIVVECYEDVECGNEIRSVIAAGNRAKRFPVI
SPIDGTRMWKVGEVVRGKRSERTEEIIDPFSAGVYCATMMAQIDVLLEKG
HVLSEIINESVIECVDSLSPYMHARGVAYMVFNCSFTAATGSKKWAPRFD
YNLSQRAYTAIDNDDALNMTHLDDFLNHEIHPAVVECAKLRPSVDISLTG
TGSDDAARASLS*
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mRNA from alignment at tig00000883_pilon:457297..458985-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9406.t1 ID=Ggra9406.t1|Name=Ggra9406.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1689bp|location=Sequence derived from alignment at tig00000883_pilon:457297..458985- (Gracilaria gracilis GNS1m male)
ATGTTCGCCTTCACCCCATCCGTCTGGCTCGGCGCCTCCGTCACTTCAAA
ACCGCACGTCGCGTCGCGACTCGCGTCGATCCGTCCTCATGCCGCGCGCA
CCTCGCGGAGTCGCTTGCGCCCGGTCACCATGGGCATACCGTCCGTCGTG
GAAGAACGTGCAAAGGCCGCTGACTTTGACACCAAATGCTTCACCAAGGA
ACGTATCACGCTTGCTGATACCGTGGAATACATTGTTCGAGGCGGACGCG
ACGTGTTCTCGAGTCTTCCCGCTGCGTTTTCGTCTGTGAAACAGGTTGGT
GTCATTGGTTGGGGAAGTCAAGGTCCGGCGCAGGCTCAGAATTTGAGGGA
TTCTTTCAGTGATGCTGGCGTTGATGCTAAGGTTGTTGTTGGGCTTCGAA
GTGGATCGTCTTCTATGGCTCAGGCCAGGAATGCTGGCTTCACTGAGGAG
AGCGGAACGCTTGGCGAAATGTACAAGGTCATTTCTGAGAGCGATCTTGT
CATTCTTCTGATTTCTGATGCTGCAACTGCAAACTGCTACAAGCAGGTGT
TCGCCGCCATGAAGCCCGGTGCTACTCTTGGTCTGTCGCATGGGTTCCTT
CTTGGCCATATGGATTCTATTGGTGAGACGTTCCCGGATGATATTAGTGT
CATTCTTGTGGCCCCGAAGGGCATGGGTCCATCGGTTAGAAGACTCTATG
TCCAAGGAAAGACTGAGAACGGTGCCGGTATAAACTGCTCTTTCGCAGTT
GAGAGAGATGTGGACGGCAAAGCAACTGATCTCGCCATTGGATGGGCTGT
GGCCATTGGGGCTCCGTTCAGTTTCCAGACTACTCTTAGAAACGAATACC
GTTCCGATATTTTTGGTGAACGCTGCATCCTGCTGGGAGCTATCCATGGC
GTGTGTGAAAGTTTGTGGAGGCGGTTTGTGCTGGATCAGGGAATGGATGA
GGAAGAGGCTTTCCTGCGTTCCACGGAGTGTATCACGGGGCCTGTGTCGA
AGGTGATATCCAAGAGAGGTATCAAGGCTGTATACACCGATATGAACGAA
GCAGATCGCGCAATCTTTGCCAAAGCCTACTGTGCGGCATATGAGCCTGC
CTATGAAATTGTTGTGGAGTGTTATGAAGATGTTGAATGTGGAAATGAGA
TCCGATCCGTGATCGCTGCAGGAAACCGTGCCAAGAGGTTCCCTGTTATC
TCACCTATTGATGGTACCCGAATGTGGAAGGTCGGTGAAGTTGTCCGTGG
CAAACGCTCTGAGAGAACTGAAGAGATTATTGACCCGTTCTCTGCTGGAG
TGTATTGTGCCACAATGATGGCACAGATTGATGTGCTACTGGAGAAGGGT
CACGTACTATCGGAGATCATCAATGAGTCGGTCATTGAATGCGTCGACAG
TCTTTCACCGTATATGCATGCTAGAGGTGTCGCGTACATGGTCTTCAACT
GCTCGTTTACTGCTGCTACCGGCAGCAAGAAGTGGGCTCCGAGATTTGAC
TACAACCTTTCGCAGAGAGCTTATACTGCCATCGACAACGATGATGCGCT
CAATATGACGCATTTGGATGATTTCCTTAATCACGAGATTCATCCTGCTG
TGGTCGAGTGTGCCAAGCTGCGCCCCTCAGTCGATATCTCGCTCACGGGA
ACTGGCTCAGACGATGCTGCCCGAGCGAGTCTTTCGTAA
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Coding sequence (CDS) from alignment at tig00000883_pilon:457297..458985-

>Ggra9406.t1 ID=Ggra9406.t1|Name=Ggra9406.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1689bp|location=Sequence derived from alignment at tig00000883_pilon:457297..458985- (Gracilaria gracilis GNS1m male)
ATGTTCGCCTTCACCCCATCCGTCTGGCTCGGCGCCTCCGTCACTTCAAA
ACCGCACGTCGCGTCGCGACTCGCGTCGATCCGTCCTCATGCCGCGCGCA
CCTCGCGGAGTCGCTTGCGCCCGGTCACCATGGGCATACCGTCCGTCGTG
GAAGAACGTGCAAAGGCCGCTGACTTTGACACCAAATGCTTCACCAAGGA
ACGTATCACGCTTGCTGATACCGTGGAATACATTGTTCGAGGCGGACGCG
ACGTGTTCTCGAGTCTTCCCGCTGCGTTTTCGTCTGTGAAACAGGTTGGT
GTCATTGGTTGGGGAAGTCAAGGTCCGGCGCAGGCTCAGAATTTGAGGGA
TTCTTTCAGTGATGCTGGCGTTGATGCTAAGGTTGTTGTTGGGCTTCGAA
GTGGATCGTCTTCTATGGCTCAGGCCAGGAATGCTGGCTTCACTGAGGAG
AGCGGAACGCTTGGCGAAATGTACAAGGTCATTTCTGAGAGCGATCTTGT
CATTCTTCTGATTTCTGATGCTGCAACTGCAAACTGCTACAAGCAGGTGT
TCGCCGCCATGAAGCCCGGTGCTACTCTTGGTCTGTCGCATGGGTTCCTT
CTTGGCCATATGGATTCTATTGGTGAGACGTTCCCGGATGATATTAGTGT
CATTCTTGTGGCCCCGAAGGGCATGGGTCCATCGGTTAGAAGACTCTATG
TCCAAGGAAAGACTGAGAACGGTGCCGGTATAAACTGCTCTTTCGCAGTT
GAGAGAGATGTGGACGGCAAAGCAACTGATCTCGCCATTGGATGGGCTGT
GGCCATTGGGGCTCCGTTCAGTTTCCAGACTACTCTTAGAAACGAATACC
GTTCCGATATTTTTGGTGAACGCTGCATCCTGCTGGGAGCTATCCATGGC
GTGTGTGAAAGTTTGTGGAGGCGGTTTGTGCTGGATCAGGGAATGGATGA
GGAAGAGGCTTTCCTGCGTTCCACGGAGTGTATCACGGGGCCTGTGTCGA
AGGTGATATCCAAGAGAGGTATCAAGGCTGTATACACCGATATGAACGAA
GCAGATCGCGCAATCTTTGCCAAAGCCTACTGTGCGGCATATGAGCCTGC
CTATGAAATTGTTGTGGAGTGTTATGAAGATGTTGAATGTGGAAATGAGA
TCCGATCCGTGATCGCTGCAGGAAACCGTGCCAAGAGGTTCCCTGTTATC
TCACCTATTGATGGTACCCGAATGTGGAAGGTCGGTGAAGTTGTCCGTGG
CAAACGCTCTGAGAGAACTGAAGAGATTATTGACCCGTTCTCTGCTGGAG
TGTATTGTGCCACAATGATGGCACAGATTGATGTGCTACTGGAGAAGGGT
CACGTACTATCGGAGATCATCAATGAGTCGGTCATTGAATGCGTCGACAG
TCTTTCACCGTATATGCATGCTAGAGGTGTCGCGTACATGGTCTTCAACT
GCTCGTTTACTGCTGCTACCGGCAGCAAGAAGTGGGCTCCGAGATTTGAC
TACAACCTTTCGCAGAGAGCTTATACTGCCATCGACAACGATGATGCGCT
CAATATGACGCATTTGGATGATTTCCTTAATCACGAGATTCATCCTGCTG
TGGTCGAGTGTGCCAAGCTGCGCCCCTCAGTCGATATCTCGCTCACGGGA
ACTGGCTCAGACGATGCTGCCCGAGCGAGTCTTTCGTAA
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