Ggra9405.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9405.t1
Unique NameGgra9405.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length403
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000883_piloncontigtig00000883_pilon:455430..456861 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX40405
Preferred nameOSGEPL1
PFAMsPeptidase_M22
Max annot lvl2759|Eukaryota
KEGG rclassRC00070,RC00416,RC00773
KEGG koko:K01409,ko:K10721
KEGG ReactionR08134,R08138,R10648
KEGG Pathwayko00981,map00981
GOsGO:0000003,GO:0000408,GO:0000959,GO:0000963,GO:0002949,GO:0003006,GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006508,GO:0006725,GO:0006807,GO:0007275,GO:0008033,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0008270,GO:0009451,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0010467,GO:0016020,GO:0016070,GO:0016787,GO:0017171,GO:0019538,GO:0019866,GO:0022414,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0061458,GO:0070011,GO:0070525,GO:0070900,GO:0071704,GO:0072670,GO:0090304,GO:0090646,GO:0140053,GO:0140096,GO:1900864,GO:1901360,GO:1901564
Evalue7.91e-129
EggNOG OGsCOG0533@1|root,KOG2707@2759|Eukaryota
EC2.3.1.234
Descriptionmitochondrial tRNA threonylcarbamoyladenosine modification
COG categoryO
BRITEko00000,ko00001,ko00199,ko01000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9405Ggra9405Gracilaria gracilis GNS1m malegenetig00000883_pilon 455430..456861 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9405.t1Ggra9405.t1Gracilaria gracilis GNS1m malepolypeptidetig00000883_pilon 455430..456861 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9405.t1.start1Ggra9405.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000883_pilon 455430..455432 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9405.t1.CDS1Ggra9405.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000883_pilon 455430..455441 +
Ggra9405.t1.CDS2Ggra9405.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000883_pilon 455547..455550 +
Ggra9405.t1.CDS3Ggra9405.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000883_pilon 455669..456861 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9405.t1.exon1Ggra9405.t1.exon1Gracilaria gracilis GNS1m maleexontig00000883_pilon 455430..455441 +
Ggra9405.t1.exon2Ggra9405.t1.exon2Gracilaria gracilis GNS1m maleexontig00000883_pilon 455547..455550 +
Ggra9405.t1.exon3Ggra9405.t1.exon3Gracilaria gracilis GNS1m maleexontig00000883_pilon 455669..456861 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9405.t1.intron1Ggra9405.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000883_pilon 455442..455546 +
Ggra9405.t1.intron2Ggra9405.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000883_pilon 455551..455668 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9405.t1.stop1Ggra9405.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000883_pilon 456859..456861 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9405.t1 ID=Ggra9405.t1|Name=Ggra9405.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=403bp
MNMRSPHQSPWEDYLIPELNGNYSPKNPQRYDSNAEPFVVLGVESSCDDT
AAAVVRSDGFVLGESRVSQDALTEAWGGVVPHVARDAHEAVIDKVIQQAL
KDADMHPSQLDAVAATMGPGLEVCLRVGYRAARRVALEHSKDFVAVNHLE
AHVLVARLASHTPFPFLTLLVSGGHCQLLLVRDVAQYEVFGGTLDDALGE
AFDKTARLLGLEVGSGGGPALEKLALKGDPRAIPFPVPMAKRPDCNFSFA
GLKTSVRVAIDKLGGDEVVRANEVVSADIAASFQETCVRHLEQRVKRAIK
LCSEHDIGVSTLVVSGGVAANKVVRTRLQDLCESREWSCVFPPIRLCTDN
GVMVGWTGIERLRKGIADNTSHLDVRARWPLAGLGPLSVPLPPDMSRTAA
AK*
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spliced messenger RNA

>Ggra9405.t1 ID=Ggra9405.t1|Name=Ggra9405.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1209bp|location=Sequence derived from alignment at tig00000883_pilon:455430..456861+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACATGAGATCCCCCCATCAGTCTCCCTGGGAGGACTACCTCATCCC
CGAACTGAACGGAAACTACTCTCCAAAGAATCCGCAGAGGTACGATTCGA
ACGCTGAGCCATTCGTCGTATTGGGCGTTGAGTCATCTTGTGATGACACG
GCCGCTGCGGTTGTTCGGTCAGATGGCTTTGTTCTAGGCGAAAGTCGGGT
CTCACAGGATGCTCTTACAGAAGCATGGGGCGGAGTAGTTCCTCACGTTG
CGCGTGACGCGCATGAAGCTGTCATAGACAAAGTGATTCAACAGGCACTC
AAAGACGCAGATATGCATCCATCTCAATTAGACGCCGTCGCAGCAACCAT
GGGACCTGGGCTCGAGGTCTGTTTACGTGTTGGATACCGAGCAGCCCGTC
GAGTTGCTCTTGAACATAGCAAAGATTTTGTGGCTGTCAATCACCTTGAA
GCCCACGTACTTGTTGCTCGTCTTGCGTCACACACACCATTTCCATTTCT
GACACTGCTTGTTTCAGGTGGTCATTGCCAACTTCTTCTTGTGCGCGATG
TGGCGCAGTATGAGGTGTTTGGTGGCACTCTTGATGATGCGCTAGGAGAG
GCTTTTGATAAGACCGCTCGTTTGTTGGGGCTGGAGGTTGGATCAGGAGG
GGGGCCGGCGCTGGAGAAACTGGCATTAAAGGGAGACCCTCGAGCGATTC
CGTTTCCGGTGCCGATGGCTAAACGACCCGATTGTAACTTTTCATTTGCT
GGACTCAAGACTAGTGTTCGGGTCGCCATAGACAAACTGGGTGGTGACGA
AGTTGTAAGGGCTAACGAGGTGGTAAGTGCGGATATTGCGGCATCATTTC
AGGAGACGTGCGTTCGTCATCTTGAGCAGCGGGTGAAGCGAGCGATCAAG
TTGTGTTCGGAACATGATATTGGCGTCAGTACATTAGTTGTTTCCGGTGG
TGTCGCCGCAAACAAAGTGGTGCGAACAAGGTTGCAGGATTTATGTGAGA
GTCGAGAATGGAGTTGCGTGTTTCCTCCAATCCGGCTTTGTACAGATAAT
GGCGTTATGGTCGGATGGACGGGTATTGAACGTCTTAGAAAGGGTATTGC
AGACAATACAAGCCATCTGGACGTGCGGGCTCGGTGGCCCCTCGCTGGTC
TGGGTCCTTTATCAGTGCCGTTGCCCCCTGACATGTCTAGAACAGCTGCG
GCAAAATAA
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protein sequence of Ggra9405.t1

>Ggra9405.t1 ID=Ggra9405.t1|Name=Ggra9405.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=403bp
MNMRSPHQSPWEDYLIPELNGNYSPKNPQRYDSNAEPFVVLGVESSCDDT
AAAVVRSDGFVLGESRVSQDALTEAWGGVVPHVARDAHEAVIDKVIQQAL
KDADMHPSQLDAVAATMGPGLEVCLRVGYRAARRVALEHSKDFVAVNHLE
AHVLVARLASHTPFPFLTLLVSGGHCQLLLVRDVAQYEVFGGTLDDALGE
AFDKTARLLGLEVGSGGGPALEKLALKGDPRAIPFPVPMAKRPDCNFSFA
GLKTSVRVAIDKLGGDEVVRANEVVSADIAASFQETCVRHLEQRVKRAIK
LCSEHDIGVSTLVVSGGVAANKVVRTRLQDLCESREWSCVFPPIRLCTDN
GVMVGWTGIERLRKGIADNTSHLDVRARWPLAGLGPLSVPLPPDMSRTAA
AK*
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mRNA from alignment at tig00000883_pilon:455430..456861+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9405.t1 ID=Ggra9405.t1|Name=Ggra9405.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1432bp|location=Sequence derived from alignment at tig00000883_pilon:455430..456861+ (Gracilaria gracilis GNS1m male)
ATGAACATGAGAGTAAGCATACATCCGCTATTTCAACATACGTTTTGCCC
AGGGTTCCACCATTTCCATGCGCCGCCTCCTTACCTTCATCCCCCATTCG
CGGCCGCTTCTTCCAAGTCCCGTGCGCTCAATTCCGCCCCGCGCCCGCGC
TAGATGGATATGTTCTCGCAACCGTCGTCGTCGAAACGTTGGTGTGCCGA
AAAACGTTCAGATCGGCACTCCGCCACCCCAACTAGCAGCCCATCAGTCT
CCCTGGGAGGACTACCTCATCCCCGAACTGAACGGAAACTACTCTCCAAA
GAATCCGCAGAGGTACGATTCGAACGCTGAGCCATTCGTCGTATTGGGCG
TTGAGTCATCTTGTGATGACACGGCCGCTGCGGTTGTTCGGTCAGATGGC
TTTGTTCTAGGCGAAAGTCGGGTCTCACAGGATGCTCTTACAGAAGCATG
GGGCGGAGTAGTTCCTCACGTTGCGCGTGACGCGCATGAAGCTGTCATAG
ACAAAGTGATTCAACAGGCACTCAAAGACGCAGATATGCATCCATCTCAA
TTAGACGCCGTCGCAGCAACCATGGGACCTGGGCTCGAGGTCTGTTTACG
TGTTGGATACCGAGCAGCCCGTCGAGTTGCTCTTGAACATAGCAAAGATT
TTGTGGCTGTCAATCACCTTGAAGCCCACGTACTTGTTGCTCGTCTTGCG
TCACACACACCATTTCCATTTCTGACACTGCTTGTTTCAGGTGGTCATTG
CCAACTTCTTCTTGTGCGCGATGTGGCGCAGTATGAGGTGTTTGGTGGCA
CTCTTGATGATGCGCTAGGAGAGGCTTTTGATAAGACCGCTCGTTTGTTG
GGGCTGGAGGTTGGATCAGGAGGGGGGCCGGCGCTGGAGAAACTGGCATT
AAAGGGAGACCCTCGAGCGATTCCGTTTCCGGTGCCGATGGCTAAACGAC
CCGATTGTAACTTTTCATTTGCTGGACTCAAGACTAGTGTTCGGGTCGCC
ATAGACAAACTGGGTGGTGACGAAGTTGTAAGGGCTAACGAGGTGGTAAG
TGCGGATATTGCGGCATCATTTCAGGAGACGTGCGTTCGTCATCTTGAGC
AGCGGGTGAAGCGAGCGATCAAGTTGTGTTCGGAACATGATATTGGCGTC
AGTACATTAGTTGTTTCCGGTGGTGTCGCCGCAAACAAAGTGGTGCGAAC
AAGGTTGCAGGATTTATGTGAGAGTCGAGAATGGAGTTGCGTGTTTCCTC
CAATCCGGCTTTGTACAGATAATGGCGTTATGGTCGGATGGACGGGTATT
GAACGTCTTAGAAAGGGTATTGCAGACAATACAAGCCATCTGGACGTGCG
GGCTCGGTGGCCCCTCGCTGGTCTGGGTCCTTTATCAGTGCCGTTGCCCC
CTGACATGTCTAGAACAGCTGCGGCAAAATAA
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Coding sequence (CDS) from alignment at tig00000883_pilon:455430..456861+

>Ggra9405.t1 ID=Ggra9405.t1|Name=Ggra9405.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1209bp|location=Sequence derived from alignment at tig00000883_pilon:455430..456861+ (Gracilaria gracilis GNS1m male)
ATGAACATGAGATCCCCCCATCAGTCTCCCTGGGAGGACTACCTCATCCC
CGAACTGAACGGAAACTACTCTCCAAAGAATCCGCAGAGGTACGATTCGA
ACGCTGAGCCATTCGTCGTATTGGGCGTTGAGTCATCTTGTGATGACACG
GCCGCTGCGGTTGTTCGGTCAGATGGCTTTGTTCTAGGCGAAAGTCGGGT
CTCACAGGATGCTCTTACAGAAGCATGGGGCGGAGTAGTTCCTCACGTTG
CGCGTGACGCGCATGAAGCTGTCATAGACAAAGTGATTCAACAGGCACTC
AAAGACGCAGATATGCATCCATCTCAATTAGACGCCGTCGCAGCAACCAT
GGGACCTGGGCTCGAGGTCTGTTTACGTGTTGGATACCGAGCAGCCCGTC
GAGTTGCTCTTGAACATAGCAAAGATTTTGTGGCTGTCAATCACCTTGAA
GCCCACGTACTTGTTGCTCGTCTTGCGTCACACACACCATTTCCATTTCT
GACACTGCTTGTTTCAGGTGGTCATTGCCAACTTCTTCTTGTGCGCGATG
TGGCGCAGTATGAGGTGTTTGGTGGCACTCTTGATGATGCGCTAGGAGAG
GCTTTTGATAAGACCGCTCGTTTGTTGGGGCTGGAGGTTGGATCAGGAGG
GGGGCCGGCGCTGGAGAAACTGGCATTAAAGGGAGACCCTCGAGCGATTC
CGTTTCCGGTGCCGATGGCTAAACGACCCGATTGTAACTTTTCATTTGCT
GGACTCAAGACTAGTGTTCGGGTCGCCATAGACAAACTGGGTGGTGACGA
AGTTGTAAGGGCTAACGAGGTGGTAAGTGCGGATATTGCGGCATCATTTC
AGGAGACGTGCGTTCGTCATCTTGAGCAGCGGGTGAAGCGAGCGATCAAG
TTGTGTTCGGAACATGATATTGGCGTCAGTACATTAGTTGTTTCCGGTGG
TGTCGCCGCAAACAAAGTGGTGCGAACAAGGTTGCAGGATTTATGTGAGA
GTCGAGAATGGAGTTGCGTGTTTCCTCCAATCCGGCTTTGTACAGATAAT
GGCGTTATGGTCGGATGGACGGGTATTGAACGTCTTAGAAAGGGTATTGC
AGACAATACAAGCCATCTGGACGTGCGGGCTCGGTGGCCCCTCGCTGGTC
TGGGTCCTTTATCAGTGCCGTTGCCCCCTGACATGTCTAGAACAGCTGCG
GCAAAATAA
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