Ggra9404.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9404.t1
Unique NameGgra9404.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length370
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000883_piloncontigtig00000883_pilon:415246..416626 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog78898.MVEG_03952T0
Preferred nameNUP170
PFAMsNucleoporin_C,Nucleoporin_N
Max annot lvl4751|Fungi
KEGG koko:K14312
KEGG TC1.I.1
KEGG Pathwayko03013,map03013
KEGG ModuleM00427
GOsGO:0000972,GO:0000973,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003723,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0006323,GO:0006325,GO:0006333,GO:0006338,GO:0006342,GO:0006355,GO:0006403,GO:0006405,GO:0006407,GO:0006606,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0006997,GO:0006999,GO:0007059,GO:0008104,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016021,GO:0016043,GO:0016458,GO:0016584,GO:0017038,GO:0017056,GO:0019219,GO:0019222,GO:0022607,GO:0022613,GO:0031224,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031497,GO:0031503,GO:0031507,GO:0031967,GO:0031975,GO:0032991,GO:0033036,GO:0033365,GO:0034397,GO:0034398,GO:0034401,GO:0034504,GO:0034613,GO:0034622,GO:0034728,GO:0036228,GO:0040029,GO:0042254,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044446,GO:0044464,GO:0044611,GO:0045184,GO:0045814,GO:0045892,GO:0045934,GO:0046907,GO:0046931,GO:0048519,GO:0048523,GO:0050000,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0051029,GO:0051168,GO:0051169,GO:0051170,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051236,GO:0051252,GO:0051253,GO:0051276,GO:0051292,GO:0051640,GO:0051641,GO:0051649,GO:0060255,GO:0065003,GO:0065007,GO:0070727,GO:0070828,GO:0070868,GO:0070869,GO:0071103,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071705,GO:0071824,GO:0071840,GO:0072594,GO:0072657,GO:0080090,GO:0090435,GO:0097064,GO:0097159,GO:0097549,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:1990841,GO:2000112,GO:2000113,GO:2001141
Evalue7.75e-15
EggNOG OGsCOG5308@1|root,KOG1900@2759|Eukaryota,38TTX@33154|Opisthokonta,3NU2K@4751|Fungi,1GV73@112252|Fungi incertae sedis
DescriptionNon-repetitive/WGA-negative nucleoporin C-terminal
COG categoryUY
BRITEko00000,ko00001,ko00002,ko03019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9404Ggra9404Gracilaria gracilis GNS1m malegenetig00000883_pilon 415246..416626 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9404.t1Ggra9404.t1Gracilaria gracilis GNS1m malepolypeptidetig00000883_pilon 415246..416626 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9404.t1.stop1Ggra9404.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000883_pilon 415246..415248 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9404.t1.CDS1Ggra9404.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000883_pilon 415246..416123 -
Ggra9404.t1.CDS2Ggra9404.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000883_pilon 416395..416626 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9404.t1.exon1Ggra9404.t1.exon1Gracilaria gracilis GNS1m maleexontig00000883_pilon 415246..416123 -
Ggra9404.t1.exon2Ggra9404.t1.exon2Gracilaria gracilis GNS1m maleexontig00000883_pilon 416395..416626 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9404.t1.intron1Ggra9404.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000883_pilon 416124..416394 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9404.t1.start1Ggra9404.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000883_pilon 416624..416626 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9404.t1 ID=Ggra9404.t1|Name=Ggra9404.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=370bp
MGLFPRINRAWLTIDSKLFLWAYASSPSQGVANDLFVFEELSQIIVSVAL
VPPRQGIFVESARYLVAVATTVEVTLLAFFARADGIVDLEIDGNALYTLT
QNRLIAVYDISAGASCVATVNAKQEAKSANFSVPSNDREFVSIHAVSPIA
SNSVQLVLVTSFGKQIYYSVSGASARLDRFTANSKIKPKTLRYVSFRPSP
DKNIETTRPCVHMAWCENGAAVLADLRENKSDRLITIFPDAELTAAGLSG
PKTRPSTMKTAEVVFDVSFGSSDESSSFNKVDTPVATRRGYNGFRSRQKA
PKRTFAISRTAPDSQTGVRECHEAVKDCHEAPNLFWVLTSTAMHLYEREF
NQLITCGKFYHLAVDLTQT*
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spliced messenger RNA

>Ggra9404.t1 ID=Ggra9404.t1|Name=Ggra9404.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1110bp|location=Sequence derived from alignment at tig00000883_pilon:415246..416626- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGACTTTTCCCGCGGATCAATCGTGCATGGCTCACCATCGATTCAAA
GCTCTTTCTCTGGGCCTATGCCTCTAGCCCTTCACAAGGTGTTGCGAATG
ACCTCTTTGTGTTTGAAGAACTTTCACAGATTATCGTTTCTGTTGCTCTA
GTCCCACCACGTCAAGGGATATTCGTGGAATCAGCTCGGTATCTAGTAGC
TGTTGCAACCACGGTCGAAGTTACGCTGTTGGCCTTTTTTGCTCGGGCTG
ATGGGATTGTGGACCTTGAAATTGACGGAAACGCCCTATACACATTAACT
CAGAACAGATTAATAGCTGTTTATGACATCAGTGCCGGCGCGAGCTGTGT
TGCAACCGTTAATGCGAAGCAGGAAGCTAAGAGCGCTAATTTTTCTGTAC
CATCCAATGACAGAGAGTTTGTTTCAATACACGCAGTTTCCCCCATTGCT
TCCAACTCAGTGCAACTGGTTCTTGTAACTTCCTTTGGAAAACAAATATA
TTACTCGGTTTCTGGAGCTTCAGCTCGACTTGATCGGTTCACTGCAAATT
CAAAGATCAAACCGAAAACATTGCGATATGTCTCTTTCCGCCCGAGTCCT
GATAAGAATATCGAAACAACTAGACCATGCGTTCATATGGCATGGTGTGA
AAATGGGGCTGCAGTTCTCGCCGACCTTCGCGAAAACAAGTCAGATCGAT
TAATAACCATATTCCCGGACGCTGAGTTGACCGCTGCTGGGCTTTCAGGA
CCCAAAACACGGCCAAGTACCATGAAGACCGCTGAGGTAGTGTTTGATGT
TTCCTTCGGATCTTCAGATGAAAGCAGTTCCTTCAATAAAGTTGACACTC
CGGTCGCAACGAGAAGAGGATATAATGGTTTTCGATCTCGTCAGAAGGCA
CCGAAGAGAACTTTTGCTATTTCTAGGACCGCGCCAGACTCTCAAACAGG
AGTCAGGGAATGTCACGAAGCAGTCAAGGACTGTCACGAAGCACCAAACC
TGTTTTGGGTTTTGACCTCCACCGCTATGCATTTGTACGAGAGAGAGTTC
AACCAGTTGATCACTTGCGGGAAATTCTATCACCTGGCGGTGGATCTCAC
ACAAACATAG
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protein sequence of Ggra9404.t1

>Ggra9404.t1 ID=Ggra9404.t1|Name=Ggra9404.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=370bp
MGLFPRINRAWLTIDSKLFLWAYASSPSQGVANDLFVFEELSQIIVSVAL
VPPRQGIFVESARYLVAVATTVEVTLLAFFARADGIVDLEIDGNALYTLT
QNRLIAVYDISAGASCVATVNAKQEAKSANFSVPSNDREFVSIHAVSPIA
SNSVQLVLVTSFGKQIYYSVSGASARLDRFTANSKIKPKTLRYVSFRPSP
DKNIETTRPCVHMAWCENGAAVLADLRENKSDRLITIFPDAELTAAGLSG
PKTRPSTMKTAEVVFDVSFGSSDESSSFNKVDTPVATRRGYNGFRSRQKA
PKRTFAISRTAPDSQTGVRECHEAVKDCHEAPNLFWVLTSTAMHLYEREF
NQLITCGKFYHLAVDLTQT*
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mRNA from alignment at tig00000883_pilon:415246..416626-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9404.t1 ID=Ggra9404.t1|Name=Ggra9404.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1381bp|location=Sequence derived from alignment at tig00000883_pilon:415246..416626- (Gracilaria gracilis GNS1m male)
ATGGGACTTTTCCCGCGGATCAATCGTGCATGGCTCACCATCGATTCAAA
GCTCTTTCTCTGGGCCTATGCCTCTAGCCCTTCACAAGGTGTTGCGAATG
ACCTCTTTGTGTTTGAAGAACTTTCACAGATTATCGTTTCTGTTGCTCTA
GTCCCACCACGTCAAGGGATATTCGTGGAATCAGCTCGGTATCTAGTAGC
TGTTGCAACCACGGTCGAAGTTACGCTGTTGGGTGTGATCTTTTCAGAAA
GCGATGAACAAGTCTGCTACCCACGCACCTATCCATCCCTACAGACAATG
TTATGATGCTTAAATTCGTAGCCACTCTAGAGGAACGGATATTTATGACT
GTAGCAGATGGTGCGCTCCATGAATTTGTGTACCACAGCCGGACAAATTC
GAATCTATCGATTTAATAAGCGGGAGACCTACAAAGCGCGCACAAAAATT
TGTTCATGGCACATCAAAGCTTGTCAATATGTTTTAACCCTCGGCCTTCA
AAGCCTTTTTTGCTCGGGCTGATGGGATTGTGGACCTTGAAATTGACGGA
AACGCCCTATACACATTAACTCAGAACAGATTAATAGCTGTTTATGACAT
CAGTGCCGGCGCGAGCTGTGTTGCAACCGTTAATGCGAAGCAGGAAGCTA
AGAGCGCTAATTTTTCTGTACCATCCAATGACAGAGAGTTTGTTTCAATA
CACGCAGTTTCCCCCATTGCTTCCAACTCAGTGCAACTGGTTCTTGTAAC
TTCCTTTGGAAAACAAATATATTACTCGGTTTCTGGAGCTTCAGCTCGAC
TTGATCGGTTCACTGCAAATTCAAAGATCAAACCGAAAACATTGCGATAT
GTCTCTTTCCGCCCGAGTCCTGATAAGAATATCGAAACAACTAGACCATG
CGTTCATATGGCATGGTGTGAAAATGGGGCTGCAGTTCTCGCCGACCTTC
GCGAAAACAAGTCAGATCGATTAATAACCATATTCCCGGACGCTGAGTTG
ACCGCTGCTGGGCTTTCAGGACCCAAAACACGGCCAAGTACCATGAAGAC
CGCTGAGGTAGTGTTTGATGTTTCCTTCGGATCTTCAGATGAAAGCAGTT
CCTTCAATAAAGTTGACACTCCGGTCGCAACGAGAAGAGGATATAATGGT
TTTCGATCTCGTCAGAAGGCACCGAAGAGAACTTTTGCTATTTCTAGGAC
CGCGCCAGACTCTCAAACAGGAGTCAGGGAATGTCACGAAGCAGTCAAGG
ACTGTCACGAAGCACCAAACCTGTTTTGGGTTTTGACCTCCACCGCTATG
CATTTGTACGAGAGAGAGTTCAACCAGTTGATCACTTGCGGGAAATTCTA
TCACCTGGCGGTGGATCTCACACAAACATAG
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Coding sequence (CDS) from alignment at tig00000883_pilon:415246..416626-

>Ggra9404.t1 ID=Ggra9404.t1|Name=Ggra9404.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1110bp|location=Sequence derived from alignment at tig00000883_pilon:415246..416626- (Gracilaria gracilis GNS1m male)
ATGGGACTTTTCCCGCGGATCAATCGTGCATGGCTCACCATCGATTCAAA
GCTCTTTCTCTGGGCCTATGCCTCTAGCCCTTCACAAGGTGTTGCGAATG
ACCTCTTTGTGTTTGAAGAACTTTCACAGATTATCGTTTCTGTTGCTCTA
GTCCCACCACGTCAAGGGATATTCGTGGAATCAGCTCGGTATCTAGTAGC
TGTTGCAACCACGGTCGAAGTTACGCTGTTGGCCTTTTTTGCTCGGGCTG
ATGGGATTGTGGACCTTGAAATTGACGGAAACGCCCTATACACATTAACT
CAGAACAGATTAATAGCTGTTTATGACATCAGTGCCGGCGCGAGCTGTGT
TGCAACCGTTAATGCGAAGCAGGAAGCTAAGAGCGCTAATTTTTCTGTAC
CATCCAATGACAGAGAGTTTGTTTCAATACACGCAGTTTCCCCCATTGCT
TCCAACTCAGTGCAACTGGTTCTTGTAACTTCCTTTGGAAAACAAATATA
TTACTCGGTTTCTGGAGCTTCAGCTCGACTTGATCGGTTCACTGCAAATT
CAAAGATCAAACCGAAAACATTGCGATATGTCTCTTTCCGCCCGAGTCCT
GATAAGAATATCGAAACAACTAGACCATGCGTTCATATGGCATGGTGTGA
AAATGGGGCTGCAGTTCTCGCCGACCTTCGCGAAAACAAGTCAGATCGAT
TAATAACCATATTCCCGGACGCTGAGTTGACCGCTGCTGGGCTTTCAGGA
CCCAAAACACGGCCAAGTACCATGAAGACCGCTGAGGTAGTGTTTGATGT
TTCCTTCGGATCTTCAGATGAAAGCAGTTCCTTCAATAAAGTTGACACTC
CGGTCGCAACGAGAAGAGGATATAATGGTTTTCGATCTCGTCAGAAGGCA
CCGAAGAGAACTTTTGCTATTTCTAGGACCGCGCCAGACTCTCAAACAGG
AGTCAGGGAATGTCACGAAGCAGTCAAGGACTGTCACGAAGCACCAAACC
TGTTTTGGGTTTTGACCTCCACCGCTATGCATTTGTACGAGAGAGAGTTC
AACCAGTTGATCACTTGCGGGAAATTCTATCACCTGGCGGTGGATCTCAC
ACAAACATAG
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