Ggra9397.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9397.t1
Unique NameGgra9397.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length234
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000883_piloncontigtig00000883_pilon:310702..311403 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMI055CT
PFAMsKOW,ribosomal_L24
Max annot lvl2759|Eukaryota
KEGG koko:K02895
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Evalue9.96e-48
EggNOG OGsCOG0198@1|root,KOG1708@2759|Eukaryota
Descriptionstructural constituent of ribosome
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9397Ggra9397Gracilaria gracilis GNS1m malegenetig00000883_pilon 310702..311403 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9397.t1.stop1Ggra9397.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000883_pilon 310702..310704 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9397.t1.CDS1Ggra9397.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000883_pilon 310702..311403 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9397.t1.exon1Ggra9397.t1.exon1Gracilaria gracilis GNS1m maleexontig00000883_pilon 310702..311403 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9397.t1.start1Ggra9397.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000883_pilon 311401..311403 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9397.t1Ggra9397.t1Gracilaria gracilis GNS1m malepolypeptidetig00000883_pilon 310702..311403 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9397.t1 ID=Ggra9397.t1|Name=Ggra9397.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=234bp
MLGLSRLAFRRPKVPIPSPPAQQIRNSSKKSLARGMPLRRGGPIPGPRFG
GKLSVDMNHRTESMIDAIRIPTPVTNPIKRWRILRGDFVEVISGPEKGKR
GRVIEVVRASNRVVVEGVGLVKKKAPAPGGYLKKFETESPIYVSRVAVIC
PQTDLPTRVTFAFMEDGTKVRVSKRSGAIIPRPEILKKRRKPHPEDSPKD
TPPTVALHRSYMDEEGLYDQYAGFKALVDKSMQ*
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spliced messenger RNA

>Ggra9397.t1 ID=Ggra9397.t1|Name=Ggra9397.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=702bp|location=Sequence derived from alignment at tig00000883_pilon:310702..311403- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGGGCCTGTCTCGTCTCGCATTTCGGCGCCCGAAGGTCCCGATTCC
TTCCCCGCCTGCGCAGCAAATTCGAAACTCCTCGAAGAAATCGCTGGCTC
GTGGCATGCCATTACGTCGCGGCGGTCCGATTCCGGGCCCTCGCTTCGGA
GGCAAACTGTCAGTTGACATGAACCATCGCACCGAGTCCATGATCGATGC
CATCCGCATTCCAACGCCTGTCACAAACCCCATCAAACGCTGGCGTATTC
TGCGCGGCGATTTCGTCGAGGTGATTAGCGGCCCGGAAAAGGGGAAGAGG
GGGCGCGTTATAGAGGTGGTGCGCGCTTCAAACAGGGTGGTTGTGGAAGG
TGTAGGCCTGGTGAAGAAGAAAGCGCCTGCTCCAGGCGGTTATCTTAAGA
AGTTCGAGACCGAATCACCTATCTACGTCTCACGAGTTGCTGTAATTTGT
CCACAGACAGACCTGCCTACTCGGGTCACGTTCGCTTTCATGGAGGATGG
CACAAAAGTGCGTGTTTCCAAGAGATCTGGCGCAATCATTCCACGGCCTG
AAATCCTCAAGAAACGACGAAAGCCACATCCGGAGGATAGCCCGAAGGAT
ACACCACCCACAGTGGCTTTACACAGAAGCTACATGGATGAGGAAGGCCT
TTATGACCAATACGCTGGCTTCAAGGCCCTTGTGGACAAGTCAATGCAAT
AG
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protein sequence of Ggra9397.t1

>Ggra9397.t1 ID=Ggra9397.t1|Name=Ggra9397.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=234bp
MLGLSRLAFRRPKVPIPSPPAQQIRNSSKKSLARGMPLRRGGPIPGPRFG
GKLSVDMNHRTESMIDAIRIPTPVTNPIKRWRILRGDFVEVISGPEKGKR
GRVIEVVRASNRVVVEGVGLVKKKAPAPGGYLKKFETESPIYVSRVAVIC
PQTDLPTRVTFAFMEDGTKVRVSKRSGAIIPRPEILKKRRKPHPEDSPKD
TPPTVALHRSYMDEEGLYDQYAGFKALVDKSMQ*
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mRNA from alignment at tig00000883_pilon:310702..311403-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9397.t1 ID=Ggra9397.t1|Name=Ggra9397.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=702bp|location=Sequence derived from alignment at tig00000883_pilon:310702..311403- (Gracilaria gracilis GNS1m male)
ATGTTGGGCCTGTCTCGTCTCGCATTTCGGCGCCCGAAGGTCCCGATTCC
TTCCCCGCCTGCGCAGCAAATTCGAAACTCCTCGAAGAAATCGCTGGCTC
GTGGCATGCCATTACGTCGCGGCGGTCCGATTCCGGGCCCTCGCTTCGGA
GGCAAACTGTCAGTTGACATGAACCATCGCACCGAGTCCATGATCGATGC
CATCCGCATTCCAACGCCTGTCACAAACCCCATCAAACGCTGGCGTATTC
TGCGCGGCGATTTCGTCGAGGTGATTAGCGGCCCGGAAAAGGGGAAGAGG
GGGCGCGTTATAGAGGTGGTGCGCGCTTCAAACAGGGTGGTTGTGGAAGG
TGTAGGCCTGGTGAAGAAGAAAGCGCCTGCTCCAGGCGGTTATCTTAAGA
AGTTCGAGACCGAATCACCTATCTACGTCTCACGAGTTGCTGTAATTTGT
CCACAGACAGACCTGCCTACTCGGGTCACGTTCGCTTTCATGGAGGATGG
CACAAAAGTGCGTGTTTCCAAGAGATCTGGCGCAATCATTCCACGGCCTG
AAATCCTCAAGAAACGACGAAAGCCACATCCGGAGGATAGCCCGAAGGAT
ACACCACCCACAGTGGCTTTACACAGAAGCTACATGGATGAGGAAGGCCT
TTATGACCAATACGCTGGCTTCAAGGCCCTTGTGGACAAGTCAATGCAAT
AG
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Coding sequence (CDS) from alignment at tig00000883_pilon:310702..311403-

>Ggra9397.t1 ID=Ggra9397.t1|Name=Ggra9397.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=702bp|location=Sequence derived from alignment at tig00000883_pilon:310702..311403- (Gracilaria gracilis GNS1m male)
ATGTTGGGCCTGTCTCGTCTCGCATTTCGGCGCCCGAAGGTCCCGATTCC
TTCCCCGCCTGCGCAGCAAATTCGAAACTCCTCGAAGAAATCGCTGGCTC
GTGGCATGCCATTACGTCGCGGCGGTCCGATTCCGGGCCCTCGCTTCGGA
GGCAAACTGTCAGTTGACATGAACCATCGCACCGAGTCCATGATCGATGC
CATCCGCATTCCAACGCCTGTCACAAACCCCATCAAACGCTGGCGTATTC
TGCGCGGCGATTTCGTCGAGGTGATTAGCGGCCCGGAAAAGGGGAAGAGG
GGGCGCGTTATAGAGGTGGTGCGCGCTTCAAACAGGGTGGTTGTGGAAGG
TGTAGGCCTGGTGAAGAAGAAAGCGCCTGCTCCAGGCGGTTATCTTAAGA
AGTTCGAGACCGAATCACCTATCTACGTCTCACGAGTTGCTGTAATTTGT
CCACAGACAGACCTGCCTACTCGGGTCACGTTCGCTTTCATGGAGGATGG
CACAAAAGTGCGTGTTTCCAAGAGATCTGGCGCAATCATTCCACGGCCTG
AAATCCTCAAGAAACGACGAAAGCCACATCCGGAGGATAGCCCGAAGGAT
ACACCACCCACAGTGGCTTTACACAGAAGCTACATGGATGAGGAAGGCCT
TTATGACCAATACGCTGGCTTCAAGGCCCTTGTGGACAAGTCAATGCAAT
AG
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